Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 1624 | 250.6 | 12620048 | 98.0% | 12367647 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,010,781 | T→C | N86N (AAT→AAC) I86V (ATT→GTT) |
b1936 → fliE ← |
hypothetical protein FliE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,010,781 | 0 | T | C | 99.1% | 713.3 / NA | 222 | N86N (AAT→AAC) I86V (ATT→GTT) | b1936 fliE | hypothetical protein FliE |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (104/116); minor base A (1/1); total (105/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 240 total aligned reads displayed.
ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT > NC_000913/2010691‑2010869 | aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc < 2:6230451/93‑1 (MQ=255)aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc > 2:4913488/1‑93 (MQ=255) tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCATTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc < 1:4429106/93‑1 (MQ=255) tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc > 1:931216/1‑93 (MQ=255) tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc > 2:2517325/1‑93 (MQ=255) cGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACcccc < 1:2476227/93‑1 (MQ=255) ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa > 1:1443258/1‑93 (MQ=255) ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa < 1:4529872/93‑1 (MQ=255) gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAt > 2:6030771/1‑93 (MQ=255) gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAt < 2:1253089/93‑1 (MQ=255) aTGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAtt > 2:5204548/1‑93 (MQ=255) aTGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAtt > 1:4633274/1‑93 (MQ=255) tGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAttt > 2:3414012/1‑93 (MQ=255) tAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGc > 1:2492965/1‑93 (MQ=255) aaTTAACAACAGGTTACAAAACCTATACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACACCCATTTGCa > 2:737036/1‑93 (MQ=255) aaTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCa < 1:695434/93‑1 (MQ=255) aaTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCa < 1:3548953/93‑1 (MQ=255) aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAt < 2:5543900/93‑1 (MQ=255) aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAt > 1:3423810/1‑93 (MQ=255) aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAACCCCATTTGCAt < 2:5603526/93‑1 (MQ=255) ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGTCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa < 2:5136521/93‑1 (MQ=255) ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa > 1:2601339/1‑93 (MQ=255) ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa < 1:4987003/93‑1 (MQ=255) ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa < 1:179326/93‑1 (MQ=255) tAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAg < 2:2743560/93‑1 (MQ=255) aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGa < 1:4029379/93‑1 (MQ=255) acaacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGaa > 1:3376545/1‑93 (MQ=255) acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACt < 1:102473/93‑1 (MQ=255) acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAATTGCATAGAAACt > 1:3600830/1‑93 (MQ=255) caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg > 1:1412537/1‑93 (MQ=255) caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg < 2:229299/93‑1 (MQ=255) caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg > 1:6045886/1‑93 (MQ=255) aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGa > 2:428447/1‑93 (MQ=255) ggTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAg < 1:3287059/93‑1 (MQ=255) tACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCt < 1:1503127/93‑1 (MQ=255) cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttt < 1:1999163/93‑1 (MQ=255) cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttt < 1:5224687/93‑1 (MQ=255) aaaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtttt > 1:1202108/1‑93 (MQ=255) aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg > 1:2104262/1‑93 (MQ=255) aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg > 2:2865943/1‑93 (MQ=255) aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg > 1:6150835/1‑93 (MQ=255) aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg > 2:3172987/1‑93 (MQ=255) aCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGc > 1:3816739/1‑93 (MQ=255) aCCTACACCTGCATGCGCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGc > 2:4128748/1‑93 (MQ=255) ccTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCa < 1:5966606/93‑1 (MQ=255) cTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCat > 2:2943114/1‑93 (MQ=255) tACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCata < 1:1954427/93‑1 (MQ=255) acacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCatat < 2:5751797/93‑1 (MQ=255) cacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc > 2:175372/1‑93 (MQ=255) acCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg > 1:5123327/1‑93 (MQ=255) acCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg < 2:1564749/93‑1 (MQ=255) ccTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCgg < 2:3742274/93‑1 (MQ=255) tGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc < 1:711095/93‑1 (MQ=255) gCATGCTCCTCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca > 2:6152847/1‑93 (MQ=255) gCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca > 2:332058/1‑93 (MQ=255) gCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca > 2:1330431/1‑93 (MQ=255) cATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcat > 1:388015/1‑93 (MQ=255) aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc > 2:3233236/1‑93 (MQ=255) aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc < 1:1656329/93‑1 (MQ=255) cTCATCACTTCCTGATACGCCGCCGCCAGCTTATTACGCACCTGAACCCCCATATGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca > 1:3298086/1‑93 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCTCCTGAACCCCCATTTGCATAGAAACTGAGTCTTTTTGCATATCGGTCATCACAt < 2:615894/93‑1 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt > 2:1791507/1‑93 (MQ=255) catcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc > 1:2569436/1‑93 (MQ=255) catcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc > 1:5436529/1‑93 (MQ=255) atcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCg < 2:3479262/93‑1 (MQ=255) tcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGt > 1:51466/1‑93 (MQ=255) caCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGtt > 1:839974/1‑93 (MQ=255) aCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt > 1:4732880/1‑93 (MQ=255) aCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt < 1:2660824/93‑1 (MQ=255) ccTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacg > 2:4710465/1‑93 (MQ=255) cTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgc < 2:3030992/93‑1 (MQ=255) gATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca < 1:2933089/93‑1 (MQ=255) aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac < 2:5272740/93‑1 (MQ=255) aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac < 1:1913726/93‑1 (MQ=255) aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac > 2:1070464/1‑93 (MQ=255) cgccgcCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc < 2:4478449/93‑1 (MQ=255) ccgccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCgg < 1:3183077/93‑1 (MQ=255) gccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt > 2:5006890/1‑93 (MQ=255) gccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt < 2:268621/93‑1 (MQ=255) ccaccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt < 2:5849434/93‑1 (MQ=255) accaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa > 1:1379449/1‑93 (MQ=255) accaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa < 2:2248187/93‑1 (MQ=255) ccaGCTTATTTCTCACCTGATCCTTTATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc < 2:1956357/93‑1 (MQ=255) ccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc < 2:4081996/93‑1 (MQ=255) ccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc < 1:5325678/93‑1 (MQ=255) aGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGCTCACCg > 2:385484/1‑93 (MQ=255) gCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga < 2:852080/93‑1 (MQ=255) gCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga > 1:3037655/1‑93 (MQ=255) ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga > 2:2573477/1‑93 (MQ=255) ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga < 1:5663217/93‑1 (MQ=255) attaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGt > 2:5117559/1‑93 (MQ=255) aCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGaa > 2:5112132/1‑93 (MQ=255) cACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttt > 2:4805592/1‑93 (MQ=255) aCCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAtttt < 1:5775501/93‑1 (MQ=255) ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt > 2:454064/1‑93 (MQ=255) ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt > 2:1456443/1‑93 (MQ=255) cTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTc < 1:1084393/93‑1 (MQ=255) tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct > 2:4420477/1‑93 (MQ=255) tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct < 2:3528251/93‑1 (MQ=255) tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct > 1:3643432/1‑93 (MQ=255) | ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT > NC_000913/2010691‑2010869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
GATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > NC_000913/2010690‑2010874 | GATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCC > SRR4302533.3590219/1‑94 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC > SRR4302533.936683/1‑94 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC > SRR4302533.913215/1‑94 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC < SRR4302533.2585756/94‑1 (MQ=60) TCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCATTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCC < SRR4302533.4455881/94‑1 (MQ=60) TCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCC < SRR4302533.3958141/94‑1 (MQ=60) TCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCC > SRR4302533.5882479/1‑94 (MQ=60) CGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCA < SRR4302533.2491500/94‑1 (MQ=60) CGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCA > SRR4302533.1451964/1‑94 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT > SRR4302533.457220/1‑94 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT < SRR4302533.4557303/94‑1 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT > SRR4302533.5173799/1‑94 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT > SRR4302533.6278041/1‑94 (MQ=60) GATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATT > SRR4302533.4661351/1‑94 (MQ=60) TGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTG > SRR4302533.2714379/1‑94 (MQ=60) GTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGC > SRR4302533.2508338/1‑94 (MQ=60) AATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAT < SRR4302533.699545/94‑1 (MQ=60) AATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAT < SRR4302533.3570821/94‑1 (MQ=60) AATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAT > SRR4302533.3444962/1‑94 (MQ=60) ATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATA > SRR4302533.3563240/1‑94 (MQ=60) ATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATA > SRR4302533.2617321/1‑94 (MQ=60) TTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAG < SRR4302533.5017240/94‑1 (MQ=60) TTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAG < SRR4302533.180449/94‑1 (MQ=60) TTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAG < SRR4302533.711642/94‑1 (MQ=60) TAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGA < SRR4302533.1681788/94‑1 (MQ=60) AACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAA > SRR4302533.3397395/1‑94 (MQ=60) AACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAA < SRR4302533.4053905/94‑1 (MQ=60) CAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAC > SRR4302533.988020/1‑94 (MQ=60) AACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACT < SRR4302533.3889892/94‑1 (MQ=60) AACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACT < SRR4302533.196097/94‑1 (MQ=60) AACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAATTGCATAGAAACT > SRR4302533.3622985/1‑94 (MQ=60) ACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTG > SRR4302533.6082514/1‑94 (MQ=60) ACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTG > SRR4302533.1421081/1‑94 (MQ=60) ACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTG < SRR4302533.103111/94‑1 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA < SRR4302533.2002457/94‑1 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA > SRR4302533.4200685/1‑94 (MQ=60) AGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCGCATTTGCATAGAAACTGAG < SRR4302533.774646/94‑1 (MQ=60) AGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAG < SRR4302533.1381764/94‑1 (MQ=60) GGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGG < SRR4302533.3160079/94‑1 (MQ=60) GGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGG < SRR4302533.3307351/94‑1 (MQ=60) GTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGC > SRR4302533.2380428/1‑94 (MQ=60) TTACAAACCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCT < SRR4302533.4541030/94‑1 (MQ=60) TTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCT < SRR4302533.4891475/94‑1 (MQ=60) TACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTT < SRR4302533.1512192/94‑1 (MQ=60) TACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAACCCCATTTGCATAGAAACTGAGGATT > SRR4302533.1501018/1‑94 (MQ=60) CAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTCTTACGCACCTGAACCCCCATTTGCATAGAAACTGCGGCTTTT > SRR4302533.959202/1‑94 (MQ=60) CAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTT > SRR4302533.1209331/1‑94 (MQ=60) CAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTT < SRR4302533.5256128/94‑1 (MQ=60) CAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTT < SRR4302533.2011466/94‑1 (MQ=60) AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTT < SRR4302533.3079461/94‑1 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302533.2117234/1‑94 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302533.6187856/1‑94 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACACCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302533.2505706/1‑94 (MQ=60) AACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGC > SRR4302533.3840075/1‑94 (MQ=60) CCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCAT < SRR4302533.6002725/94‑1 (MQ=60) TACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATAT < SRR4302533.4658146/94‑1 (MQ=60) TACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATAT < SRR4302533.1966335/94‑1 (MQ=60) CACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCG > SRR4302533.5154280/1‑94 (MQ=60) ACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGG > SRR4302533.5467240/1‑94 (MQ=60) CTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTC < SRR4302533.5031563/94‑1 (MQ=60) CTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTC > SRR4302533.6132646/1‑94 (MQ=60) TGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCA > SRR4302533.320569/1‑94 (MQ=60) TGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCA < SRR4302533.715294/94‑1 (MQ=60) GCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCAT > SRR4302533.390355/1‑94 (MQ=60) GCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCAT > SRR4302533.5714149/1‑94 (MQ=60) CATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATC > SRR4302533.3789997/1‑94 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA > SRR4302533.144772/1‑94 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA < SRR4302533.1666352/94‑1 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA > SRR4302533.3330490/1‑94 (MQ=60) GCTCATCACTTCCTGATACGCCGCCGCCAGCTTATTACGCACCTGAACCCCCATATGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACA > SRR4302533.3318440/1‑94 (MQ=60) GCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACA < SRR4302533.4025339/94‑1 (MQ=60) CTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAT < SRR4302533.1359636/94‑1 (MQ=60) TCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATC > SRR4302533.2585248/1‑94 (MQ=60) TCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATC > SRR4302533.5469271/1‑94 (MQ=60) ATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGT > SRR4302533.51815/1‑94 (MQ=60) TCACTTCCTGATACGCCGCCAGCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTT < SRR4302533.5243817/94‑1 (MQ=60) TCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTT > SRR4302533.844888/1‑94 (MQ=60) CACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTT > SRR4302533.4761571/1‑94 (MQ=60) CACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTT < SRR4302533.4693693/94‑1 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA > SRR4302533.3454552/1‑94 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA < SRR4302533.2677162/94‑1 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA > SRR4302533.4995784/1‑94 (MQ=60) TCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACG < SRR4302533.5230485/94‑1 (MQ=60) TGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCA > SRR4302533.3343470/1‑94 (MQ=60) GATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCAC < SRR4302533.5652079/94‑1 (MQ=60) GATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCAC < SRR4302533.1396955/94‑1 (MQ=60) GATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCAC < SRR4302533.2951025/94‑1 (MQ=60) ATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACG < SRR4302533.1925404/94‑1 (MQ=60) ATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACG > SRR4302533.1059964/1‑94 (MQ=60) ATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACG < SRR4302533.6045236/94‑1 (MQ=60) ATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACG < SRR4302533.3639619/94‑1 (MQ=60) GCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCTTCACATCGTTTAACGCCACGCCGG > SRR4302533.265045/1‑94 (MQ=60) GCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGG > SRR4302533.3310162/1‑94 (MQ=60) GCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGG < SRR4302533.777640/94‑1 (MQ=60) CCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGG < SRR4302533.3202659/94‑1 (MQ=60) CGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGT > SRR4302533.231279/1‑94 (MQ=60) CGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGT > SRR4302533.3009384/1‑94 (MQ=60) GCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTT > SRR4302533.1433275/1‑94 (MQ=60) CCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTC < SRR4302533.5945917/94‑1 (MQ=60) CACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCA > SRR4302533.2116771/1‑94 (MQ=60) CACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCA < SRR4302533.1945481/94‑1 (MQ=60) CACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCA > SRR4302533.1387748/1‑94 (MQ=60) ACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAC < SRR4302533.2805305/94‑1 (MQ=60) CCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACC < SRR4302533.5357594/94‑1 (MQ=60) CAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG > SRR4302533.617833/1‑94 (MQ=60) CAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG < SRR4302533.1187388/94‑1 (MQ=60) CAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG < SRR4302533.1553510/94‑1 (MQ=60) AGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA < SRR4302533.529955/94‑1 (MQ=60) AGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA > SRR4302533.3056241/1‑94 (MQ=60) GCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAG < SRR4302533.3690775/94‑1 (MQ=60) TTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302533.5697434/94‑1 (MQ=60) TTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG > SRR4302533.5410368/1‑94 (MQ=60) TTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302533.1760524/94‑1 (MQ=60) TATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGT > SRR4302533.2533711/1‑94 (MQ=60) TATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGT < SRR4302533.2575886/94‑1 (MQ=60) ATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTG < SRR4302533.341115/94‑1 (MQ=60) CACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTT < SRR4302533.1839722/94‑1 (MQ=60) ACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTT < SRR4302533.5810382/94‑1 (MQ=60) CTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT > SRR4302533.3665833/1‑94 (MQ=60) CTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT < SRR4302533.1090789/94‑1 (MQ=60) AACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCTGGCATCACATAGGTTAACGCCACGCCGGGTTCACCGAGAGCGAATTTTTCTGCC > SRR4302533.3980795/1‑94 (MQ=60) ACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCT < SRR4302533.6093197/94‑1 (MQ=60) ACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCT < SRR4302533.3608047/94‑1 (MQ=60) CCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > SRR4302533.6119857/1‑94 (MQ=60) CCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG < SRR4302533.1975340/94‑1 (MQ=60) CCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > SRR4302533.102498/1‑94 (MQ=60) | GATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > NC_000913/2010690‑2010874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |