Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,037,676	(C)_5→6	coding (177/1005 nt)	b1971 →	putative reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,037,671	1	.	C	100.0%	525.1 / NA	166	A58P (GCC→CCC)	b1971	putative reductase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (76/90); total (76/90)

Only 100 of 210 total aligned reads displayed.

AGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT  >  NC_000913/2037580‑2037758

aGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccgcccg‑c                                                                                        <  1:6905403/93‑1 (MQ=255)

 gCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccgcccg‑cc                                                                                       <  1:6332159/93‑1 (MQ=255)

    cTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAATGGAACGATCGCCCGcccg‑ccccc                                                                                    >  1:5250217/1‑93 (MQ=255)

    cTGAGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccg‑ccccc                                                                                    <  2:5060710/93‑1 (MQ=255)

     tGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccg‑cccccc                                                                                   >  1:685586/1‑92 (MQ=255)

     tGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccg‑cccccc                                                                                   <  2:2990805/93‑2 (MQ=255)

      gggCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccg‑ccccccg                                                                                  >  2:2215143/1‑91 (MQ=255)

       ggCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccg‑ccccccgc                                                                                 <  1:3343550/93‑4 (MQ=255)

        gCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGacgg‑ccccccgcc                                                                                >  2:8460172/1‑89 (MQ=255)

           tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGa                                                                              <  1:5699640/93‑1 (MQ=255)

           tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGa                                                                              >  1:4403582/1‑93 (MQ=255)

           tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGa                                                                              >  1:2969462/1‑93 (MQ=255)

           tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGa                                                                              >  1:3668914/1‑93 (MQ=255)

            cAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGaa                                                                             <  1:3504754/93‑1 (MQ=255)

               tGCAACTGCCCTTTCTTTGCCTCCCGGTCCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAg                                                                          <  2:1340690/93‑1 (MQ=255)

               tGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGaaacg                                                                          >  1:7623323/1‑91 (MQ=255)

               tGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAg                                                                          <  2:2333983/93‑1 (MQ=255)

               tGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACAATCGCCCGCCCGCCCCCCGCCGGAAAAg                                                                          >  1:3231839/1‑93 (MQ=255)

                 cAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAgcg                                                                        >  2:804640/1‑93 (MQ=255)

                  aaCTGCTCTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAgcgc                                                                       <  2:2923195/93‑1 (MQ=255)

                  aaCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAgcgc                                                                       >  1:1829297/1‑93 (MQ=255)

                   aCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCt                                                                      <  2:6300494/93‑1 (MQ=255)

                    cTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTg                                                                     <  1:6459860/93‑1 (MQ=255)

                    cTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTg                                                                     >  1:9666153/1‑93 (MQ=255)

                     tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAGGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTgg                                                                    <  2:3225228/93‑1 (MQ=255)

                     tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTgg                                                                    >  2:7321316/1‑93 (MQ=255)

                     tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTgg                                                                    <  1:4928324/93‑1 (MQ=255)

                      gCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGa                                                                   >  2:7133919/1‑93 (MQ=255)

                      gCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGa                                                                   <  2:3170088/93‑1 (MQ=255)

                      gCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGa                                                                   <  2:4932657/93‑1 (MQ=255)

                       cACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAg                                                                  >  2:2072664/1‑93 (MQ=255)

                       cACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAg                                                                  >  1:9882705/1‑93 (MQ=255)

                        aCTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGt                                                                 >  1:2534791/1‑93 (MQ=255)

                         ctttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGtt                                                                >  1:644804/1‑93 (MQ=255)

                          tttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTc                                                               >  1:5961476/1‑93 (MQ=255)

                          tttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTc                                                               <  1:7995732/93‑1 (MQ=255)

                              tttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCa                                                           <  1:4120138/93‑1 (MQ=255)

                              tttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCa                                                           <  1:2523173/93‑1 (MQ=255)

                              tttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCa                                                           >  2:9076233/1‑93 (MQ=255)

                                 gCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGc                                                        >  2:7703023/1‑93 (MQ=255)

                                 gCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGc                                                        >  2:5818264/1‑93 (MQ=255)

                                  ccTCAGGCTGGGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc                                                       <  1:7476839/93‑1 (MQ=255)

                                  ccTCACGCTGCGAATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc                                                       <  1:5350065/93‑1 (MQ=255)

                                  ccTCACGCTGCCCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc                                                       <  2:5234621/93‑1 (MQ=255)

                                   cTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCt                                                      <  1:3044623/93‑1 (MQ=255)

                                    tCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTg                                                     >  1:7197871/1‑93 (MQ=255)

                                    tCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGCTCAGCCAGCCTg                                                     >  1:1337873/1‑93 (MQ=255)

                                     cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc                                                    <  2:5454814/93‑1 (MQ=255)

                                       cGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgccg                                                  >  2:4227508/1‑93 (MQ=255)

                                         cTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgccgcc                                                <  2:7419871/93‑1 (MQ=255)

                                          tGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCt                                               <  2:497807/93‑1 (MQ=255)

                                           gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg                                              <  1:2252391/93‑1 (MQ=255)

                                           gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg                                              >  1:5852592/1‑93 (MQ=255)

                                             gcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGc                                            <  1:6477087/93‑1 (MQ=255)

                                                tGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaa                                         >  2:6782829/1‑93 (MQ=255)

                                                tGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaa                                         >  2:1244611/1‑93 (MQ=255)

                                                tGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaa                                         >  2:8605138/1‑93 (MQ=255)

                                                 gCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaaa                                        <  1:9014140/93‑1 (MQ=255)

                                                 gCCGATCTGCTTAGCTGGTTTAAAGGGAACGACCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaaa                                        <  1:5066188/93‑1 (MQ=255)

                                                   cGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATa                                      <  1:10045784/93‑1 (MQ=255)

                                                    gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa                                     <  1:4233076/93‑1 (MQ=255)

                                                    gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa                                     >  2:1810476/1‑93 (MQ=255)

                                                     aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGGGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc                                    >  1:3756806/1‑93 (MQ=255)

                                                      tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc                                   >  2:6126861/1‑93 (MQ=255)

                                                      tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc                                   <  1:2712886/93‑1 (MQ=255)

                                                      tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc                                   <  2:4734707/93‑1 (MQ=255)

                                                       cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt                                  <  2:1922552/93‑1 (MQ=255)

                                                       cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt                                  <  1:7136037/93‑1 (MQ=255)

                                                         gCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGGGTTCAGTAAGCCTGCCGCCTGGCAAAATAACCTGc                                >  1:7391940/1‑93 (MQ=255)

                                                         gCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGc                                <  1:5598647/93‑1 (MQ=255)

                                                         gCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGc                                >  2:8762143/1‑93 (MQ=255)

                                                          cTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACATGcc                               >  2:9187765/1‑93 (MQ=255)

                                                           ttAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCa                              <  1:8802500/93‑1 (MQ=255)

                                                             aGCTGGTTTAAAGGGAACGATCCCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACt                            <  1:9450614/93‑1 (MQ=255)

                                                              gCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTg                           >  2:6050354/1‑93 (MQ=255)

                                                              gCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTg                           >  1:8920497/1‑93 (MQ=255)

                                                               cTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGa                          <  2:8808318/93‑1 (MQ=255)

                                                                    ttAAAGGGACCGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCca                     <  2:9201145/93‑1 (MQ=255)

                                                                    taaaaGTGACCCATCCCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCca                     <  2:3309518/91‑1 (MQ=255)

                                                                     tAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCACAATAACCTGCCACTGACGCcag                    >  1:1660540/1‑93 (MQ=255)

                                                                      aaggggAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagc                   <  2:2703722/90‑1 (MQ=255)

                                                                       aaGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca                  >  1:5362849/1‑93 (MQ=255)

                                                                       aaGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca                  <  1:541600/93‑1 (MQ=255)

                                                                       aaGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca                  <  2:3437732/93‑1 (MQ=255)

                                                                         gggAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGGTGGAGTTCAGCAAGCCTGCAGCCTGGCAAAAGAACCTGCCACTGCAGCGAGCAGa                >  1:2060462/1‑93 (MQ=255)

                                                                         gggAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGa                <  1:9118224/93‑1 (MQ=255)

                                                                          ggAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGaa               >  2:8491018/1‑92 (MQ=255)

                                                                           gAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATa              <  1:4671715/93‑1 (MQ=255)

                                                                              cGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAg           >  2:3072331/1‑93 (MQ=255)

                                                                              cGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAg           <  2:393042/93‑1 (MQ=255)

                                                                               gATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGt          >  2:9831245/1‑93 (MQ=255)

                                                                                gtCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGtt         <  1:6298648/92‑1 (MQ=255)

                                                                                aTCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt         >  2:3992415/1‑93 (MQ=255)

                                                                                   ccccccccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTcc      <  1:2772980/92‑1 (MQ=255)

                                                                                    cccgcccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCg     >  2:1762859/1‑93 (MQ=255)

                                                                                    cccgcccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCg     >  2:4361082/1‑93 (MQ=255)

                                                                                     ccgcccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCgg    <  1:6629734/93‑1 (MQ=255)

                                                                                     ccgcccgcccCCCGCCGGAAAAGCGCTGAAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCgg    <  1:3962053/93‑1 (MQ=255)

                                                                                      cgcccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGt   <  2:6883918/93‑1 (MQ=255)

                                                                                       gcccgcccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGtt  >  2:3411716/1‑93 (MQ=255)

AGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT  >  NC_000913/2037580‑2037758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC  >  NC_000913/2037583‑2037769

actggtgataAGTGCAACTGCACTTTCTTTGCCTCACTCTGCTCGTGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CC                                                                                               <  SRR4302540.9987776/84‑1 (MQ=60)

ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAATGGAACGATCGCCCGCCCG‑‑CCC‑CC                                                                                               >  SRR4302540.5307484/1‑94 (MQ=60)

ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAATAGAAGGATCGCCCGCCCG‑‑CCC‑TC                                                                                               >  SRR4302540.5307485/1‑94 (MQ=60)

 CTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CCC                                                                                              >  SRR4302540.692945/1‑94 (MQ=60)

 CTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CCC                                                                                              >  SRR4302540.3272408/1‑94 (MQ=60)

  TGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CCcg                                                                                             <  SRR4302540.4993657/94‑3 (MQ=60)

    GGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCC                                                                                            <  SRR4302540.3380237/94‑1 (MQ=60)

       ATCAGTGCGACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGA                                                                                         >  SRR4302540.3559842/1‑94 (MQ=60)

       ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGA                                                                                         >  SRR4302540.3002257/1‑94 (MQ=60)

       ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGA                                                                                         >  SRR4302540.4451332/1‑94 (MQ=60)

       ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGA                                                                                         >  SRR4302540.3709050/1‑94 (MQ=60)

       ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGA                                                                                         >  SRR4302540.3002260/1‑94 (MQ=60)

        TCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAA                                                                                        <  SRR4302540.5762395/94‑1 (MQ=60)

        TAAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGACCGATCGCCCGCCCGC‑CCC‑CCGCCGGAA                                                                                        <  SRR4302540.5762394/94‑1 (MQ=60)

         CAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAA                                                                                       <  SRR4302540.3542934/94‑1 (MQ=60)

          AGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCACGC‑CCC‑CCGCCGGAAAA                                                                                      >  SRR4302540.715774/1‑94 (MQ=60)

           GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAACG                                                                                     >  SRR4302540.7709057/1‑94 (MQ=60)

           GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAG                                                                                     >  SRR4302540.7224723/1‑94 (MQ=60)

           GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAG                                                                                     >  SRR4302540.7709056/1‑94 (MQ=60)

           GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAG                                                                                     >  SRR4302540.4467882/1‑94 (MQ=60)

           GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACAATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAG                                                                                     >  SRR4302540.3266980/1‑94 (MQ=60)

            TGCAACTGCACTTTCTTTTCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGC                                                                                    <  SRR4302540.2945550/94‑1 (MQ=60)

            TGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGC                                                                                    <  SRR4302540.9511062/94‑1 (MQ=60)

              CAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGC                                                                                  >  SRR4302540.1849312/1‑94 (MQ=60)

                ACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTG                                                                                >  SRR4302540.9779915/1‑94 (MQ=60)

                 CTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGG                                                                               <  SRR4302540.6531761/94‑1 (MQ=60)

                 CTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGG                                                                               <  SRR4302540.6531762/94‑1 (MQ=60)

                  TGCACTTTCTTTGCCTCCCGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGA                                                                              <  SRR4302540.6324098/94‑1 (MQ=60)

                  TGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGA                                                                              <  SRR4302540.4981447/94‑1 (MQ=60)

                   GCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAG                                                                             >  SRR4302540.9998102/1‑94 (MQ=60)

                    CACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGT                                                                            >  SRR4302540.2562128/1‑94 (MQ=60)

                     TCTTTCTTTTCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTT                                                                           <  SRR4302540.2131001/94‑1 (MQ=60)

                     ACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATGGCCCGCCCG‑‑CCCACCGCCGGAAAcgagctgggggt                                                                           >  SRR4302540.651675/1‑82 (MQ=60)

                     ACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTT                                                                           >  SRR4302540.651674/1‑94 (MQ=60)

                      CTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTC                                                                          >  SRR4302540.6027421/1‑94 (MQ=60)

                       TTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCA                                                                         <  SRR4302540.8088807/94‑1 (MQ=60)

                           TTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAA                                                                     <  SRR4302540.2550411/94‑1 (MQ=60)

                           TTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAA                                                                     <  SRR4302540.4164624/94‑1 (MQ=60)

                           TTTGCCTCACGCCGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAA                                                                     <  SRR4302540.5886003/94‑1 (MQ=60)

                            TTGCATCACCATGCGCATGCCGATCTGCTTACCTGGTTTAAAGGGAACGATCGCCCCCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAG                                                                    <  SRR4302540.5700686/94‑1 (MQ=60)

                              GCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCC                                                                  >  SRR4302540.3203086/1‑94 (MQ=60)

                              GCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCC                                                                  >  SRR4302540.4135800/1‑94 (MQ=60)

                               CCTCAGGCTGGGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT                                                                 <  SRR4302540.7560279/94‑1 (MQ=60)

                               CCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT                                                                 <  SRR4302540.7560278/94‑1 (MQ=60)

                               CCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT                                                                 <  SRR4302540.4372350/94‑1 (MQ=60)

                               CCTCACGCTGCGAATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT                                                                 <  SRR4302540.5408771/94‑1 (MQ=60)

                                CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTG                                                                >  SRR4302540.7278109/1‑94 (MQ=60)

                                CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTG                                                                <  SRR4302540.3078032/94‑1 (MQ=60)

                                CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGCTCAGCCAGCCTG                                                                >  SRR4302540.1351880/1‑94 (MQ=60)

                                  CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC                                                              <  SRR4302540.7206103/94‑1 (MQ=60)

                                  CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC                                                              <  SRR4302540.10028077/94‑1 (MQ=60)

                                   ACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCG                                                             >  SRR4302540.3900753/1‑94 (MQ=60)

                                    CGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCC                                                             >  SRR4302540.2671505/1‑94 (MQ=60)

                                    CGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGgtccgcaacgcggccgc                                                            >  SRR4302540.6574290/1‑77 (MQ=60)

                                     GCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCC                                                           >  SRR4302540.255673/1‑94 (MQ=60)

                                      ccgccCATGCCGATCTGCTTAGGTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCT                                                          <  SRR4302540.3246971/89‑1 (MQ=60)

                                       TGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTG                                                         >  SRR4302540.5917323/1‑94 (MQ=60)

                                        GCGCATGCCGATCTGCTTAGCTGTTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG                                                        <  SRR4302540.6981332/94‑1 (MQ=60)

                                        GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG                                                        <  SRR4302540.2276565/94‑1 (MQ=60)

                                        GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCAGGAGTTCAGCAAGCCTGCCGCCTGG                                                        <  SRR4302540.8192397/94‑1 (MQ=60)

                                         CGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGC                                                       >  SRR4302540.4235054/1‑94 (MQ=60)

                                          GCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCA                                                      <  SRR4302540.6549150/94‑1 (MQ=60)

                                          GCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCA                                                      >  SRR4302540.975721/1‑94 (MQ=60)

                                          GCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCA                                                      >  SRR4302540.8052787/1‑94 (MQ=60)

                                              GCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAAT                                                  <  SRR4302540.9122287/94‑1 (MQ=60)

                                              GCCGATCTGCTTAGCTGGTTTAAAGGGAACGACCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAAT                                                  <  SRR4302540.5120964/94‑1 (MQ=60)

                                                CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA                                                <  SRR4302540.10162567/94‑1 (MQ=60)

                                                CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA                                                <  SRR4302540.1688408/94‑1 (MQ=60)

                                                CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA                                                <  SRR4302540.3786704/94‑1 (MQ=60)

                                                 GATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGGGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAC                                               >  SRR4302540.3797789/1‑94 (MQ=60)

                                                 GATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAC                                               <  SRR4302540.4279146/94‑1 (MQ=60)

                                                  ATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCTGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACC                                              <  SRR4302540.3506060/94‑1 (MQ=60)

                                                   TCTGCTTAGCTGGTTTAACGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT                                             <  SRR4302540.6761982/94‑1 (MQ=60)

                                                   TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT                                             <  SRR4302540.2742138/94‑1 (MQ=60)

                                                   TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTACAGCAAGCCTGCCGCCTGGCAAAATAACCT                                             >  SRR4302540.5462933/1‑94 (MQ=60)

                                                   TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCACCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT                                             <  SRR4302540.5855083/94‑1 (MQ=60)

                                                    CTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTG                                            <  SRR4302540.7215539/94‑1 (MQ=60)

                                                     TGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGGGTTCAGTAAGCCTGCCGCCTGGCAAAATAACCTGC                                           >  SRR4302540.7474307/1‑94 (MQ=60)

                                                      GCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCC                                          <  SRR4302540.744043/94‑1 (MQ=60)

                                                      GCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCC                                          <  SRR4302540.5660241/94‑1 (MQ=60)

                                                        TTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCAC                                        <  SRR4302540.8904260/94‑1 (MQ=60)

                                                          AGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTG                                      >  SRR4302540.9023859/1‑94 (MQ=60)

                                                          AGCTGGTTTAAAGGGAACGATCCCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTG                                      <  SRR4302540.9562796/94‑1 (MQ=60)

                                                          AGCGGTTTTAAAGGGAACAATCCCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCGGGCAAAATAACCTGCCACTG                                      <  SRR4302540.7938406/94‑1 (MQ=60)

                                                            CTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAC                                    <  SRR4302540.1190224/94‑1 (MQ=60)

                                                             GGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACG                                   <  SRR4302540.2777639/94‑1 (MQ=60)

                                                                 TTAAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCACAATAACCTGCCACTGACGCCAG                               >  SRR4302540.1678632/1‑94 (MQ=60)

                                                                 TTAAAGGGAACGACCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAG                               <  SRR4302540.2075871/94‑1 (MQ=60)

                                                                   AAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCA                             >  SRR4302540.5421754/1‑94 (MQ=60)

                                                                   AAAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCA                             >  SRR4302540.1387273/1‑94 (MQ=60)

                                                                    AAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAG                            >  SRR4302540.2377255/1‑94 (MQ=60)

                                                                    AAGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAG                            <  SRR4302540.547463/94‑1 (MQ=60)

                                                                     AGGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGGTGGAGTTCAGCAAGCCTGCAGCCTGGCAAAAGAACCTGCCACTGCAGCGAGCAGA                           >  SRR4302540.2082638/1‑94 (MQ=60)

                                                                      GGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAT                          <  SRR4302540.9227822/94‑1 (MQ=60)

                                                                      GGGAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAT                          <  SRR4302540.9227826/94‑1 (MQ=60)

                                                                        GAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAA                        <  SRR4302540.4721715/94‑1 (MQ=60)

                                                                        GAACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAA                        <  SRR4302540.6390136/94‑1 (MQ=60)

                                                                          ACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAG                      <  SRR4302540.5417809/94‑1 (MQ=60)

                                                                          ACGATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAG                      >  SRR4302540.4950875/1‑94 (MQ=60)

                                                                            GATCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTT                    >  SRR4302540.3025217/1‑94 (MQ=60)

                                                                             GTCGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTT                   <  SRR4302540.6368790/94‑1 (MQ=60)

                                                                               CGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCC                 <  SRR4302540.5501170/94‑1 (MQ=60)

                                                                               CGCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCC                 <  SRR4302540.601187/94‑1 (MQ=60)

                                                                                GCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCG                >  SRR4302540.894136/1‑94 (MQ=60)

                                                                                CCCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCG                <  SRR4302540.9113736/94‑1 (MQ=60)

                                                                                 ccccccccgcCCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCG                <  SRR4302540.2802941/84‑1 (MQ=60)

                                                                                 CCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG               >  SRR4302540.9560873/1‑94 (MQ=60)

                                                                                 CCCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCAGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG               >  SRR4302540.524823/1‑94 (MQ=60)

                                                                                  CCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGT              <  SRR4302540.6703124/94‑1 (MQ=60)

                                                                                  CCGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGAAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGT              <  SRR4302540.4004782/94‑1 (MQ=60)

                                                                                   CGCCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT             >  SRR4302540.4325968/1‑94 (MQ=60)

                                                                                     cctcccCCC‑CCGCCGGAAAAGCGGTGGAGTTCACGAAGCCTGCCGCCTGGAAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTA            <  SRR4302540.382309/88‑1 (MQ=60)

                                                                                     CCCGC‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGACAAAGTTTCCGGTTAT           >  SRR4302540.526038/1‑94 (MQ=60)

                                                                                        cgcCCC‑CCGCCGAAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAA         <  SRR4302540.1508092/91‑1 (MQ=60)

                                                                                         gcCCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAAT        >  SRR4302540.3658380/3‑94 (MQ=60)

                                                                                         gcCCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAACTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAAT        >  SRR4302540.186615/3‑94 (MQ=60)

                                                                                         ccaCC‑CCGCCGAAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAAT        <  SRR4302540.4115577/91‑1 (MQ=60)

                                                                                            CC‑CCGCCGGAAAAGGCCTGGAGTTCAGCAAGCCTGCGGCGTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAAC     <  SRR4302540.5515667/94‑1 (MQ=60)

                                                                                            CC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAAC     >  SRR4302540.1900548/1‑94 (MQ=60)

                                                                                                CGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC  >  SRR4302540.1725900/1‑94 (MQ=60)

ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCC‑CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC  >  NC_000913/2037583‑2037769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`