Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,172,208 T→C M31V (ATG→GTG)  gatC ← PTS system galactitol‑specific enzyme IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,172,2080TC99.1% 1123.5 / ‑2.1 347M31V (ATG→GTG) gatCPTS system galactitol‑specific enzyme IIC
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base C (197/147);  total (199/148)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01

Only 100 of 352 total aligned reads displayed.

TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA  >  NC_000913/2172118‑2172297
                                                                                          |                                                                                         
tGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGc                                                                                         >  2:339219/1‑93 (MQ=255)
 ggAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGcc                                                                                        <  2:2887598/93‑1 (MQ=255)
  gAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCCGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCt                                                                                       >  2:7757468/1‑93 (MQ=255)
  gAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCt                                                                                       <  1:4957602/93‑1 (MQ=255)
  gAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCt                                                                                       <  1:8094751/93‑1 (MQ=255)
  gAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCt                                                                                       >  1:4513848/1‑93 (MQ=255)
   aaTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTa                                                                                      >  2:8393990/1‑93 (MQ=255)
   aaTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTa                                                                                      >  1:1688880/1‑93 (MQ=255)
   aaTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTa                                                                                      >  1:2097017/1‑93 (MQ=255)
    aTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTaa                                                                                     >  2:4929561/1‑93 (MQ=255)
     tCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAat                                                                                    >  1:9136002/1‑93 (MQ=255)
      ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata                                                                                   <  1:329644/93‑1 (MQ=255)
       cAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAatat                                                                                  <  1:7098487/93‑1 (MQ=255)
        aGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAtt                                                                                 >  1:8249097/1‑93 (MQ=255)
         gCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACTCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAttt                                                                                >  2:4796401/1‑93 (MQ=255)
         gCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAttt                                                                                <  2:8639029/93‑1 (MQ=255)
          cATTAAGCCAATCACAAGGCCAATGCCAACAAAGACAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAtttt                                                                               >  2:1007565/1‑93 (MQ=255)
           aTTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTa                                                                              >  2:3323334/1‑93 (MQ=255)
             tAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGa                                                                            >  1:6814328/1‑93 (MQ=255)
               aGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaa                                                                          <  2:3507286/93‑1 (MQ=255)
               aGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaa                                                                          <  2:2643826/93‑1 (MQ=255)
                gCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaaa                                                                         <  1:1463682/93‑1 (MQ=255)
                 gcAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaaaa                                                                        <  2:3109711/92‑1 (MQ=255)
                   aaTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaat                                                                      >  1:7556556/1‑93 (MQ=255)
                    aTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaata                                                                     <  2:2500026/93‑1 (MQ=255)
                     tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaataa                                                                    <  1:3173481/93‑1 (MQ=255)
                       acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGATCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg                                                                  <  2:7454348/93‑1 (MQ=255)
                         aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat                                                                >  1:9053560/1‑93 (MQ=255)
                         aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat                                                                >  1:6378021/1‑93 (MQ=255)
                         aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGAACCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat                                                                >  2:5066307/1‑93 (MQ=255)
                          aGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgatg                                                               >  2:402576/1‑93 (MQ=255)
                                aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc                                                         >  1:5205621/1‑93 (MQ=255)
                                aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc                                                         >  1:286868/1‑93 (MQ=255)
                                aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc                                                         <  1:9755029/93‑1 (MQ=255)
                                 tGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCg                                                        >  2:4717114/1‑93 (MQ=255)
                                 tGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCg                                                        >  1:6448114/1‑93 (MQ=255)
                                   ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgc                                                      <  1:7825156/93‑1 (MQ=255)
                                   ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgc                                                      >  2:72539/1‑93 (MQ=255)
                                    caacaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgca                                                     <  2:1253483/93‑1 (MQ=255)
                                     aacaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcag                                                    <  1:8564614/93‑1 (MQ=255)
                                       caaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcagca                                                  >  2:5929147/1‑93 (MQ=255)
                                       caaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcagca                                                  >  1:5756690/1‑93 (MQ=255)
                                         aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc                                                >  1:8028638/1‑93 (MQ=255)
                                         aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc                                                >  1:1806418/1‑93 (MQ=255)
                                         aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc                                                >  2:5224005/1‑93 (MQ=255)
                                          aGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCa                                               >  2:1334121/1‑93 (MQ=255)
                                          aGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCa                                               >  1:7272927/1‑93 (MQ=255)
                                           gCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAc                                              <  2:1864147/93‑1 (MQ=255)
                                           gCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAc                                              >  1:6069585/1‑93 (MQ=255)
                                            ccAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAcc                                             >  1:8804451/1‑93 (MQ=255)
                                             cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg                                            <  2:6348887/93‑1 (MQ=255)
                                             cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg                                            >  1:1271488/1‑93 (MQ=255)
                                              caTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGt                                           <  1:2419988/92‑1 (MQ=255)
                                               aTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTa                                          >  1:4621210/1‑93 (MQ=255)
                                                tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg                                         >  2:3696210/1‑93 (MQ=255)
                                                 cccGATGTGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAgg                                        >  2:9880136/1‑93 (MQ=255)
                                                 cccGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAgg                                        <  2:9291507/93‑1 (MQ=255)
                                                  ccGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAggg                                       <  2:229683/93‑1 (MQ=255)
                                                   cGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGc                                      >  2:76360/1‑93 (MQ=255)
                                                    gATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGcc                                     >  1:2715967/1‑93 (MQ=255)
                                                     atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCg                                    >  1:3989914/1‑93 (MQ=255)
                                                     atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCg                                    >  1:1996789/1‑93 (MQ=255)
                                                      tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa                                   <  2:8904405/93‑1 (MQ=255)
                                                      tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa                                   >  2:955736/1‑93 (MQ=255)
                                                      tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa                                   >  1:9429930/1‑93 (MQ=255)
                                                      tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa                                   >  2:8724802/1‑93 (MQ=255)
                                                       atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg                                  <  2:2732484/93‑1 (MQ=255)
                                                        tGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAgg                                 >  2:7979517/1‑93 (MQ=255)
                                                        tGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAgg                                 <  2:5637351/93‑1 (MQ=255)
                                                            gACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCga                             >  2:3836777/1‑93 (MQ=255)
                                                             aCCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgag                            >  2:8218185/1‑93 (MQ=255)
                                                             aCCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgag                            <  2:6836526/93‑1 (MQ=255)
                                                             aCCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgag                            <  2:1990664/93‑1 (MQ=255)
                                                               ccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGaa                          >  1:9927073/1‑93 (MQ=255)
                                                                 gCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAata                        <  2:616447/93‑1 (MQ=255)
                                                                 ccTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAata                        <  2:2056619/92‑1 (MQ=255)
                                                                    ttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATaa                     >  1:529352/1‑93 (MQ=255)
                                                                       aaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGc                  >  1:5904853/1‑93 (MQ=255)
                                                                       aaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGc                  >  2:212963/1‑93 (MQ=255)
                                                                       aaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGc                  <  1:6668299/93‑1 (MQ=255)
                                                                       aaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGc                  <  2:7064913/93‑1 (MQ=255)
                                                                        aGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCa                 <  2:6388449/93‑1 (MQ=255)
                                                                         gCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAt                <  1:255210/93‑1 (MQ=255)
                                                                         gCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAt                <  1:10021094/93‑1 (MQ=255)
                                                                           aaTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGa              <  1:5548582/93‑1 (MQ=255)
                                                                            aTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAc             >  1:9622600/1‑93 (MQ=255)
                                                                             tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt            >  2:5335174/1‑93 (MQ=255)
                                                                             tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt            >  1:9274796/1‑93 (MQ=255)
                                                                             tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt            >  1:9535418/1‑93 (MQ=255)
                                                                              cGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACtt           <  2:450702/93‑1 (MQ=255)
                                                                               gcctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTc          >  2:419136/1‑93 (MQ=255)
                                                                                cctgcctTCACGCGTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCt         <  2:7593946/93‑1 (MQ=255)
                                                                                 ctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTg        >  1:6246029/1‑93 (MQ=255)
                                                                                  tgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGa       >  1:3800122/1‑93 (MQ=255)
                                                                                  tgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGa       >  2:3023905/1‑93 (MQ=255)
                                                                                   gcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaa      <  2:6590790/93‑1 (MQ=255)
                                                                                   gcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaa      >  1:4649322/1‑93 (MQ=255)
                                                                                     ctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaaaa    >  2:9733038/1‑93 (MQ=255)
                                                                                      ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCAGAGGTCGCGAATATAACGCCTGACTTCTGaaaa  >  1:1435817/1‑92 (MQ=255)
                                                                                       tCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACa  >  1:5133925/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA  >  NC_000913/2172118‑2172297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG  >  NC_000913/2172115‑2172301
                                                                                             |                                                                                             
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC                                                                                               <  SRR4302540.1891221/94‑1 (MQ=60)
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC                                                                                               >  SRR4302540.9320463/1‑94 (MQ=60)
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC                                                                                               >  SRR4302540.4294950/1‑94 (MQ=60)
 AATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACG                                                                                              <  SRR4302540.5350065/94‑1 (MQ=60)
  ATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGC                                                                                             >  SRR4302540.8248854/1‑94 (MQ=60)
  ATGGAACCCAGCATTAAGCCAATCACAAGTCCAATGCCACCAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGC                                                                                             <  SRR4302540.7131119/94‑1 (MQ=60)
   TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCC                                                                                            <  SRR4302540.2263894/94‑1 (MQ=60)
   TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCC                                                                                            >  SRR4302540.4674806/1‑94 (MQ=60)
    GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT                                                                                           >  SRR4302540.4651081/1‑94 (MQ=60)
    GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT                                                                                           >  SRR4302540.4562752/1‑94 (MQ=60)
    GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT                                                                                           <  SRR4302540.8285041/94‑1 (MQ=60)
    GGAATCAGGCATTAAGACAATCACAAGGCTAATGCCAACAAAGCCAATCCCGATATGCAGACCAGCTTTAAGGCAATCGCCTGCCTTCACGCCT                                                                                           <  SRR4302540.8285040/94‑1 (MQ=60)
     GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA                                                                                          >  SRR4302540.2119531/1‑94 (MQ=60)
     GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA                                                                                          <  SRR4302540.8188707/94‑1 (MQ=60)
     GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA                                                                                          <  SRR4302540.5011181/94‑1 (MQ=60)
     GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA                                                                                          >  SRR4302540.1707194/1‑94 (MQ=60)
      AATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAA                                                                                         <  SRR4302540.6499718/94‑1 (MQ=60)
       ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT                                                                                        <  SRR4302540.4691201/94‑1 (MQ=60)
       ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT                                                                                        >  SRR4302540.224432/1‑94 (MQ=60)
       ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT                                                                                        >  SRR4302540.9245786/1‑94 (MQ=60)
       ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT                                                                                        >  SRR4302540.3531365/1‑94 (MQ=60)
       ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT                                                                                        <  SRR4302540.5218958/94‑1 (MQ=60)
         CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT                                                                                      <  SRR4302540.332950/94‑1 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     >  SRR4302540.8344984/1‑94 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     >  SRR4302540.8344985/1‑94 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     <  SRR4302540.9319456/94‑1 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     <  SRR4302540.7177477/94‑1 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     <  SRR4302540.7177479/94‑1 (MQ=60)
          CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATT                                                                                     <  SRR4302540.4185686/94‑1 (MQ=60)
             CATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTA                                                                                  >  SRR4302540.6748536/1‑94 (MQ=60)
              ATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAG                                                                                 >  SRR4302540.5301457/1‑94 (MQ=60)
              ATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAG                                                                                 >  SRR4302540.717503/1‑94 (MQ=60)
               TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA                                                                                >  SRR4302540.6889749/1‑94 (MQ=60)
               TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA                                                                                >  SRR4302540.1990420/1‑94 (MQ=60)
               TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA                                                                                >  SRR4302540.112437/1‑94 (MQ=60)
               TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA                                                                                >  SRR4302540.6889748/1‑94 (MQ=60)
               TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA                                                                                >  SRR4302540.1857881/1‑94 (MQ=60)
                TAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCACCTGCCTTCACGCCTAATATTTTAGAA                                                                               >  SRR4302540.5851343/1‑94 (MQ=60)
                 AAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAA                                                                              >  SRR4302540.995260/1‑94 (MQ=60)
                  AGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAA                                                                             >  SRR4302540.9520947/1‑94 (MQ=60)
                   GCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAA                                                                            <  SRR4302540.1479642/94‑1 (MQ=60)
                   ACCAAGCACAAGGCCAATGCCAACAACGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAA                                                                            <  SRR4302540.1479640/94‑1 (MQ=60)
                     CAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAAT                                                                          >  SRR4302540.5850145/1‑94 (MQ=60)
                     CAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAAT                                                                          >  SRR4302540.7641293/1‑94 (MQ=60)
                       ATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAA                                                                        >  SRR4302540.7970887/1‑94 (MQ=60)
                       ATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAA                                                                        >  SRR4302540.523528/1‑94 (MQ=60)
                       ATAACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAA                                                                        >  SRR4302540.1416834/1‑94 (MQ=60)
                        TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAAT                                                                       <  SRR4302540.3207975/94‑1 (MQ=60)
                         CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG                                                                      <  SRR4302540.5024070/94‑1 (MQ=60)
                           CAAGTCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT                                                                    <  SRR4302540.9174152/94‑1 (MQ=60)
                           CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT                                                                    >  SRR4302540.6449028/1‑94 (MQ=60)
                           CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT                                                                    <  SRR4302540.6711544/94‑1 (MQ=60)
                           CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT                                                                    >  SRR4302540.9162243/1‑94 (MQ=60)
                           CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT                                                                    <  SRR4302540.7643800/94‑1 (MQ=60)
                            AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG                                                                   <  SRR4302540.3353179/94‑1 (MQ=60)
                             AGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGA                                                                  <  SRR4302540.9746462/94‑1 (MQ=60)
                              agacgatgccaaccgAGCCAATCCCGATGCGCCGACCCGGTTTAAAGCAATCGCCTGGCTTCCCGCCTAAGAGTTTAGAAAAAATAATGATGAC                                                                 <  SRR4302540.5538811/79‑1 (MQ=26)
                              GGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGAC                                                                 <  SRR4302540.5538812/94‑1 (MQ=60)
                                CCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAA                                                               >  SRR4302540.2072676/1‑94 (MQ=60)
                                 CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT                                                              >  SRR4302540.2758711/1‑94 (MQ=60)
                                 CAATGCCAACAAAGCCAACCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT                                                              <  SRR4302540.6256473/94‑1 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.1275431/1‑94 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.5262322/1‑94 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.4794759/1‑94 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.7452962/1‑94 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.3119099/1‑94 (MQ=60)
                                  AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC                                                             >  SRR4302540.289697/1‑94 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            >  SRR4302540.6519894/1‑94 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            >  SRR4302540.6519893/1‑94 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            >  SRR4302540.8493150/1‑94 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            >  SRR4302540.3238820/1‑94 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            <  SRR4302540.9869475/94‑1 (MQ=60)
                                   ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG                                                            >  SRR4302540.2458406/1‑94 (MQ=60)
                                    TGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGG                                                           >  SRR4302540.2606118/1‑94 (MQ=60)
                                      CCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCA                                                         <  SRR4302540.7916598/94‑1 (MQ=60)
                                      CCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCA                                                         >  SRR4302540.5827959/1‑94 (MQ=60)
                                       CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG                                                        <  SRR4302540.6663302/94‑1 (MQ=60)
                                        AACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGC                                                       <  SRR4302540.8664076/94‑1 (MQ=60)
                                         ACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCA                                                      >  SRR4302540.5820236/1‑94 (MQ=60)
                                         ACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCA                                                      <  SRR4302540.7105796/94‑1 (MQ=60)
                                          AAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCAT                                                     <  SRR4302540.9732708/94‑1 (MQ=60)
                                           AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC                                                    >  SRR4302540.1826098/1‑94 (MQ=60)
                                           AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC                                                    >  SRR4302540.8121996/1‑94 (MQ=60)
                                            AAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCA                                                   >  SRR4302540.7354084/1‑94 (MQ=60)
                                             AGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAC                                                  >  SRR4302540.6137064/1‑94 (MQ=60)
                                             AGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAC                                                  <  SRR4302540.8149572/94‑1 (MQ=60)
                                             AGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAC                                                  >  SRR4302540.4601597/1‑94 (MQ=60)
                                              GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC                                                 <  SRR4302540.928180/94‑1 (MQ=60)
                                              GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC                                                 <  SRR4302540.5032056/94‑1 (MQ=60)
                                              GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC                                                 >  SRR4302540.8906230/1‑94 (MQ=60)
                                              GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC                                                 <  SRR4302540.7947515/94‑1 (MQ=60)
                                               CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG                                                >  SRR4302540.1947253/1‑94 (MQ=60)
                                               CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG                                                >  SRR4302540.2407582/1‑94 (MQ=60)
                                               CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG                                                >  SRR4302540.5698280/1‑94 (MQ=60)
                                               CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG                                                <  SRR4302540.4768173/94‑1 (MQ=60)
                                               CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG                                                >  SRR4302540.1284572/1‑94 (MQ=60)
                                                 CATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA                                              <  SRR4302540.2446070/94‑1 (MQ=60)
                                                 AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA                                              <  SRR4302540.5098467/94‑1 (MQ=60)
                                                 AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA                                              <  SRR4302540.7184549/94‑1 (MQ=60)
                                                 AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA                                              >  SRR4302540.5314597/1‑94 (MQ=60)
                                                 AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA                                              >  SRR4302540.4670746/1‑94 (MQ=60)
                                                  ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG                                             <  SRR4302540.4179358/94‑1 (MQ=60)
                                                  ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG                                             >  SRR4302540.5531018/1‑94 (MQ=60)
                                                  ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG                                             >  SRR4302540.3099531/1‑94 (MQ=60)
                                                   TCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGG                                            >  SRR4302540.6502095/1‑94 (MQ=60)
                                                     CCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGC                                          <  SRR4302540.4355268/94‑1 (MQ=60)
                                                      CGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCC                                         >  SRR4302540.2745254/1‑94 (MQ=60)
                                                       GATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCG                                        >  SRR4302540.9347123/1‑94 (MQ=60)
                                                       GATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCG                                        >  SRR4302540.4032860/1‑94 (MQ=60)
                                                       GATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCG                                        >  SRR4302540.2018422/1‑94 (MQ=60)
                                                        ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATGACCGTAGGGCCGA                                       >  SRR4302540.6076124/1‑94 (MQ=60)
                                                        ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA                                       >  SRR4302540.10013626/1‑94 (MQ=60)
                                                        ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA                                       >  SRR4302540.9541956/1‑94 (MQ=60)
                                                        ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA                                       >  SRR4302540.2573153/1‑94 (MQ=60)
                                                         AATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAG                                      <  SRR4302540.1805857/94‑1 (MQ=60)
                                                          ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG                                     >  SRR4302540.5741012/1‑94 (MQ=60)
                                                              AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA                                 >  SRR4302540.6371577/1‑94 (MQ=60)
                                                              AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA                                 <  SRR4302540.1764581/94‑1 (MQ=60)
                                                              AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA                                 >  SRR4302540.269175/1‑94 (MQ=60)
                                                              AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA                                 >  SRR4302540.9131002/1‑94 (MQ=60)
                                                              AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA                                 >  SRR4302540.5348621/1‑94 (MQ=60)
                                                               GACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAG                                >  SRR4302540.6311968/1‑94 (MQ=60)
                                                               GACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAG                                <  SRR4302540.1683119/94‑1 (MQ=60)
                                                                ACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGA                               <  SRR4302540.9490006/94‑1 (MQ=60)
                                                                 CCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAA                              <  SRR4302540.8162013/94‑1 (MQ=60)
                                                                 CCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAA                              >  SRR4302540.10042966/1‑94 (MQ=60)
                                                                  CCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAT                             >  SRR4302540.6837848/1‑94 (MQ=60)
                                                                  CCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAT                             <  SRR4302540.8675101/94‑1 (MQ=60)
                                                                    GCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATAT                           >  SRR4302540.790011/1‑94 (MQ=60)
                                                                     CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA                          >  SRR4302540.3180195/1‑94 (MQ=60)
                                                                     CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA                          >  SRR4302540.3254922/1‑94 (MQ=60)
                                                                     CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA                          <  SRR4302540.5816824/94‑1 (MQ=60)
                                                                      TTTAAAGCAGTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA                         <  SRR4302540.3926627/94‑1 (MQ=60)
                                                                      TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGTGCCGAGGTCGAGAATATAA                         >  SRR4302540.1554205/1‑94 (MQ=60)
                                                                      TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA                         >  SRR4302540.8926212/1‑94 (MQ=60)
                                                                      TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA                         >  SRR4302540.2894686/1‑94 (MQ=60)
                                                                      TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA                         <  SRR4302540.8123044/94‑1 (MQ=60)
                                                                      TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA                         >  SRR4302540.535072/1‑94 (MQ=60)
                                                                       TTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC                        <  SRR4302540.9565899/94‑1 (MQ=60)
                                                                       TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC                        >  SRR4302540.9634938/1‑94 (MQ=60)
                                                                       TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC                        >  SRR4302540.9088971/1‑94 (MQ=60)
                                                                       TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC                        >  SRR4302540.9634937/1‑94 (MQ=60)
                                                                       TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC                        <  SRR4302540.10106369/94‑1 (MQ=60)
                                                                         AAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGC                      >  SRR4302540.5970064/1‑94 (MQ=60)
                                                                          AAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCA                     <  SRR4302540.6741997/94‑1 (MQ=60)
                                                                          AAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCA                     >  SRR4302540.6130120/1‑94 (MQ=60)
                                                                          AAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCA                     >  SRR4302540.2040488/1‑94 (MQ=60)
                                                                           AGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAT                    <  SRR4302540.7697955/94‑1 (MQ=60)
                                                                            GCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATG                   <  SRR4302540.10137717/94‑1 (MQ=60)
                                                                            GCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATG                   <  SRR4302540.257684/94‑1 (MQ=60)
                                                                              AATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAC                 >  SRR4302540.9736017/1‑94 (MQ=60)
                                                                              AATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAC                 >  SRR4302540.983236/1‑94 (MQ=60)
                                                                              AATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAC                 <  SRR4302540.5609707/94‑1 (MQ=60)
                                                                               ATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACT                >  SRR4302540.9648291/1‑94 (MQ=60)
                                                                               ATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACT                >  SRR4302540.9385685/1‑94 (MQ=60)
                                                                                TCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTT               <  SRR4302540.74995/94‑1 (MQ=60)
                                                                                 CGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTC              >  SRR4302540.2707804/1‑94 (MQ=60)
                                                                                 CGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTC              <  SRR4302540.1622152/94‑1 (MQ=60)
                                                                                 CGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTC              >  SRR4302540.1005211/1‑94 (MQ=60)
                                                                                  GCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCT             >  SRR4302540.6172003/1‑94 (MQ=60)
                                                                                   CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG            >  SRR4302540.1286435/1‑94 (MQ=60)
                                                                                   CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG            >  SRR4302540.6315541/1‑94 (MQ=60)
                                                                                   CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG            >  SRR4302540.4010019/1‑94 (MQ=60)
                                                                                   CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG            >  SRR4302540.1286436/1‑94 (MQ=60)
                                                                                    CTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGA           >  SRR4302540.3841525/1‑94 (MQ=60)
                                                                                     TGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGGCGAGGTCGAGAATATAACGCATGACTTCTGAA          >  SRR4302540.96737/1‑94 (MQ=60)
                                                                                     TGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAA          >  SRR4302540.4699087/1‑94 (MQ=60)
                                                                                     TGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAA          >  SRR4302540.4699086/1‑94 (MQ=60)
                                                                                       CCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAA        >  SRR4302540.703835/1‑94 (MQ=60)
                                                                                       CCTTCACGCCGAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAA        <  SRR4302540.337296/94‑1 (MQ=60)
                                                                                        CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC       >  SRR4302540.1451384/1‑94 (MQ=60)
                                                                                        CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC       >  SRR4302540.6422637/1‑94 (MQ=60)
                                                                                        CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCAGAGGTCGCGAATATAACGCCTGACTTCTGAAAAA       >  SRR4302540.1451383/1‑94 (MQ=60)
                                                                                         TTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA      <  SRR4302540.975171/94‑1 (MQ=60)
                                                                                         TTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA      >  SRR4302540.5189526/1‑94 (MQ=60)
                                                                                         TTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA      <  SRR4302540.9217978/94‑1 (MQ=60)
                                                                                          TCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACAT     <  SRR4302540.8397011/94‑1 (MQ=60)
                                                                                          TCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACAT     <  SRR4302540.8736149/94‑1 (MQ=60)
                                                                                           CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA    <  SRR4302540.6368578/94‑1 (MQ=60)
                                                                                           CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA    <  SRR4302540.3099458/94‑1 (MQ=60)
                                                                                            ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG   <  SRR4302540.5299038/94‑1 (MQ=60)
                                                                                            ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG   >  SRR4302540.3853085/1‑94 (MQ=60)
                                                                                            ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG   <  SRR4302540.640062/94‑1 (MQ=60)
                                                                                            ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG   <  SRR4302540.3746935/94‑1 (MQ=60)
                                                                                            ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG   >  SRR4302540.922617/1‑94 (MQ=60)
                                                                                             CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG  <  SRR4302540.1375446/94‑1 (MQ=60)
                                                                                             |                                                                                             
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG  >  NC_000913/2172115‑2172301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: