Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,172,208 |
T→C |
M31V (ATG→GTG) |
gatC ← |
PTS system galactitol‑specific enzyme IIC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,172,208 | 0 | T | C | 99.5%
| 688.0
/ NA
| 212 | M31V (ATG→GTG) | gatC | PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (98/113); minor base A (1/0); total (99/113) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 214 total aligned reads displayed.
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA > NC_000913/2172118‑2172297
|
tGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGc < 2:6287893/93‑1 (MQ=255)
ggaaaTGCAGCATTAAGGCAATCACAAGGCCAATGCCAACAAATCCAATCCCGATATGCAGACCCGCTTTCAAGCAATCACCTTCCTTCACGc > 2:1201244/4‑93 (MQ=255)
ggAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGcc < 1:5446356/93‑1 (MQ=255)
ggAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGcc < 1:3297464/93‑1 (MQ=255)
ggAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGcc > 2:368733/1‑93 (MQ=255)
tCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAat < 1:3832579/93‑1 (MQ=255)
ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata < 2:4215306/93‑1 (MQ=255)
ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata < 1:1474505/93‑1 (MQ=255)
ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAACCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata < 1:6170566/93‑1 (MQ=255)
cAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAatat > 2:498090/1‑93 (MQ=255)
cAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAatat > 2:2199559/1‑93 (MQ=255)
aGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCGTTCACGCCTAATAtt > 1:5359152/1‑93 (MQ=255)
aGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAtt < 2:5459023/93‑1 (MQ=255)
gCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAttt > 2:3554501/1‑93 (MQ=255)
ttAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAg > 1:4464179/1‑93 (MQ=255)
tAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGa < 2:3970679/93‑1 (MQ=255)
aaGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaa < 1:3982841/93‑1 (MQ=255)
gCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaaa < 2:5565756/93‑1 (MQ=255)
cAATCACAAGGCCAATGCCATCAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaaaaaa < 1:166833/93‑1 (MQ=255)
aaTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaat > 2:2033806/1‑93 (MQ=255)
tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaataa < 1:517662/93‑1 (MQ=255)
cacaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaataat > 2:2548724/1‑93 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg > 2:5678406/1‑93 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg < 1:5049430/93‑1 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg < 2:3448989/93‑1 (MQ=255)
caAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatga < 1:5641664/93‑1 (MQ=255)
aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat > 1:3364468/1‑93 (MQ=255)
aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat < 1:1421992/93‑1 (MQ=255)
aaGGCCAACGCCAGCAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat < 2:1317026/93‑1 (MQ=255)
aaGCCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat < 1:3329189/93‑1 (MQ=255)
aGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgatg < 1:4829604/93‑1 (MQ=255)
aGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgatg > 1:1096283/1‑93 (MQ=255)
aGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgatg > 2:5349404/1‑93 (MQ=255)
ggCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAAtgatga < 2:6090925/93‑1 (MQ=255)
gCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGAc > 2:5721625/1‑93 (MQ=255)
ccAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACa > 2:1955148/1‑93 (MQ=255)
ccAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACa > 1:2809460/1‑93 (MQ=255)
cAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACaa < 1:1262352/93‑1 (MQ=255)
aaTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAt < 2:753735/93‑1 (MQ=255)
aaTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAt < 2:5155637/93‑1 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc < 1:5882610/93‑1 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc > 1:5827788/1‑93 (MQ=255)
gCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCgg > 1:4779238/1‑93 (MQ=255)
gCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCgg > 1:3691306/1‑93 (MQ=255)
aacaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAAGCCTAATATTTTAGACAAAATAATGATGACAATcagcag > 1:1995835/1‑93 (MQ=255)
acaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcagc > 1:2321115/1‑93 (MQ=255)
caaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcagca < 2:2707698/93‑1 (MQ=255)
aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc > 1:4583715/1‑93 (MQ=255)
aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc > 1:5399220/1‑93 (MQ=255)
gCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAc > 1:5224075/1‑93 (MQ=255)
cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg > 1:1059790/1‑93 (MQ=255)
cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg < 1:4280988/93‑1 (MQ=255)
aTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTa < 2:3318428/93‑1 (MQ=255)
aTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGAAAATCGGCAGCATCACCGTa < 2:6159320/93‑1 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg > 1:2139060/1‑93 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg < 1:2674274/93‑1 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg > 2:627095/1‑93 (MQ=255)
cccGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAgg < 1:883297/93‑1 (MQ=255)
ccGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAggg > 1:4407308/1‑93 (MQ=255)
cGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGc < 2:4035331/93‑1 (MQ=255)
gATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGcc < 2:4428894/93‑1 (MQ=255)
atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCg < 2:3544620/93‑1 (MQ=255)
atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCg > 1:5454855/1‑93 (MQ=255)
tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa > 1:696751/1‑93 (MQ=255)
atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg > 2:1800635/1‑93 (MQ=255)
atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg < 1:924444/93‑1 (MQ=255)
gCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGt < 2:4531250/93‑1 (MQ=255)
gCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGt > 2:1532681/1‑93 (MQ=255)
gCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGt < 1:735754/93‑1 (MQ=255)
cAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTc > 1:2091918/1‑93 (MQ=255)
gACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCga < 2:1570629/93‑1 (MQ=255)
aCCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgag > 2:5306750/1‑93 (MQ=255)
cccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgaga > 2:3089911/1‑93 (MQ=255)
cccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgaga > 2:1212767/1‑93 (MQ=255)
ccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGaa < 1:2504584/93‑1 (MQ=255)
ccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGaa > 1:5772588/1‑93 (MQ=255)
cTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAatat < 2:857984/93‑1 (MQ=255)
tttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAtata < 1:4538008/93‑1 (MQ=255)
tttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAtata > 1:1752567/1‑93 (MQ=255)
tttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGCCGAGAAtata > 1:1764296/1‑93 (MQ=255)
ttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATaa < 2:6113868/93‑1 (MQ=255)
tAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAc < 1:5956934/93‑1 (MQ=255)
tAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAc > 1:1199327/1‑93 (MQ=255)
aGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCa < 1:621470/93‑1 (MQ=255)
aGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCa < 2:1898376/93‑1 (MQ=255)
aGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCa < 2:1662151/93‑1 (MQ=255)
cAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATg < 1:3492309/93‑1 (MQ=255)
aaTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGGCGAGAATATAACGCATGa > 2:2767277/1‑93 (MQ=255)
tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt > 2:4733433/1‑93 (MQ=255)
tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt > 2:2629531/1‑93 (MQ=255)
cGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACtt < 1:2292637/93‑1 (MQ=255)
gcctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTc < 2:3505701/93‑1 (MQ=255)
tgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGa < 1:5202907/93‑1 (MQ=255)
cctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaaa > 1:4234864/1‑93 (MQ=255)
ctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaaaa > 1:3759806/1‑93 (MQ=255)
ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc > 2:3739228/1‑93 (MQ=255)
ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc < 2:2898396/93‑1 (MQ=255)
ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc > 2:2974008/1‑93 (MQ=255)
tCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACa < 1:3928567/93‑1 (MQ=255)
tCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACa > 1:138733/1‑93 (MQ=255)
|
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA > NC_000913/2172118‑2172297
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > NC_000913/2172115‑2172301
|
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC < SRR4302533.2962639/94‑1 (MQ=60)
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC > SRR4302533.1711071/1‑94 (MQ=60)
AATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACG < SRR4302533.5002553/94‑1 (MQ=60)
ATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGC < SRR4302533.4552425/94‑1 (MQ=60)
GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT < SRR4302533.3317814/94‑1 (MQ=60)
GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT < SRR4302533.5479167/94‑1 (MQ=60)
GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA > SRR4302533.1710817/1‑94 (MQ=60)
ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT < SRR4302533.3921269/94‑1 (MQ=60)
ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT < SRR4302533.2323437/94‑1 (MQ=60)
TCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATA < SRR4302533.3856005/94‑1 (MQ=60)
TCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATA < SRR4302533.3374546/94‑1 (MQ=60)
CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT < SRR4302533.1483416/94‑1 (MQ=60)
CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT < SRR4302533.5898794/94‑1 (MQ=60)
CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAACCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT < SRR4302533.6207651/94‑1 (MQ=60)
CAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCGTTCACGCCTAATATT > SRR4302533.5391324/1‑94 (MQ=60)
AGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTT > SRR4302533.3767936/1‑94 (MQ=60)
AGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTT < SRR4302533.1922216/94‑1 (MQ=60)
CATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTA < SRR4302533.877154/94‑1 (MQ=60)
ATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAG > SRR4302533.4491179/1‑94 (MQ=60)
TAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAA < SRR4302533.4430218/94‑1 (MQ=60)
AAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAA < SRR4302533.4007087/94‑1 (MQ=60)
CAATCACAAGGCCAATGCCATCAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAAT < SRR4302533.167892/94‑1 (MQ=60)
ATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAA > SRR4302533.5105061/1‑94 (MQ=60)
TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAAT < SRR4302533.520739/94‑1 (MQ=60)
ACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGA < SRR4302533.5079972/94‑1 (MQ=60)
ACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGA < SRR4302533.3334743/94‑1 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT < SRR4302533.5675763/94‑1 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT < SRR4302533.894850/94‑1 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT > SRR4302533.3385254/1‑94 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT > SRR4302533.5746936/1‑94 (MQ=60)
AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG > SRR4302533.1102775/1‑94 (MQ=60)
AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG < SRR4302533.5261312/94‑1 (MQ=60)
AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG < SRR4302533.1430590/94‑1 (MQ=60)
AAGCCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG < SRR4302533.3349765/94‑1 (MQ=60)
AGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGA < SRR4302533.204903/94‑1 (MQ=60)
AGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGA > SRR4302533.4451573/1‑94 (MQ=60)
AGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGA < SRR4302533.4858873/94‑1 (MQ=60)
GCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACA > SRR4302533.2826747/1‑94 (MQ=60)
CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT < SRR4302533.119591/94‑1 (MQ=60)
CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT < SRR4302533.1269902/94‑1 (MQ=60)
AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC < SRR4302533.6092950/94‑1 (MQ=60)
AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC < SRR4302533.126868/94‑1 (MQ=60)
AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC > SRR4302533.2427820/1‑94 (MQ=60)
AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC > SRR4302533.5863002/1‑94 (MQ=60)
ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG > SRR4302533.564055/1‑94 (MQ=60)
ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG > SRR4302533.5156170/1‑94 (MQ=60)
ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG < SRR4302533.5918160/94‑1 (MQ=60)
TGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGG > SRR4302533.4808188/1‑94 (MQ=60)
TGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGG > SRR4302533.3713985/1‑94 (MQ=60)
GCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGC > SRR4302533.4177731/1‑94 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAAGCCTAATATTTTAGACAAAATAATGATGACAATCAGCAG > SRR4302533.2008095/1‑94 (MQ=60)
AACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGC > SRR4302533.2335483/1‑94 (MQ=60)
ACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCA > SRR4302533.5253960/1‑94 (MQ=60)
AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC > SRR4302533.5431666/1‑94 (MQ=60)
AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC > SRR4302533.4611484/1‑94 (MQ=60)
AAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCA < SRR4302533.5419547/94‑1 (MQ=60)
AGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAC > SRR4302533.5255501/1‑94 (MQ=60)
CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG > SRR4302533.5481670/1‑94 (MQ=60)
CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG > SRR4302533.1066021/1‑94 (MQ=60)
CAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGT < SRR4302533.4306724/94‑1 (MQ=60)
AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA > SRR4302533.2725213/1‑94 (MQ=60)
ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG > SRR4302533.2152245/1‑94 (MQ=60)
TCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGG < SRR4302533.2690676/94‑1 (MQ=60)
CCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGG > SRR4302533.4643934/1‑94 (MQ=60)
CCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGG > SRR4302533.4433922/1‑94 (MQ=60)
CCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGG < SRR4302533.888485/94‑1 (MQ=60)
GATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCG > SRR4302533.5487718/1‑94 (MQ=60)
ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA > SRR4302533.700872/1‑94 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG < SRR4302533.929873/94‑1 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG < SRR4302533.5516376/94‑1 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG < SRR4302533.3668987/94‑1 (MQ=60)
TGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGT < SRR4302533.1466460/94‑1 (MQ=60)
GCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTC > SRR4302533.2104801/1‑94 (MQ=60)
GCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTC < SRR4302533.740081/94‑1 (MQ=60)
CAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCG < SRR4302533.1325540/94‑1 (MQ=60)
CAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCG > SRR4302533.4827118/1‑94 (MQ=60)
AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA > SRR4302533.1407690/1‑94 (MQ=60)
AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA > SRR4302533.2469944/1‑94 (MQ=60)
GACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAG < SRR4302533.6249815/94‑1 (MQ=60)
ACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGA < SRR4302533.2126102/94‑1 (MQ=60)
ACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGA > SRR4302533.4935526/1‑94 (MQ=60)
CCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAA > SRR4302533.5807444/1‑94 (MQ=60)
CCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAT < SRR4302533.2520025/94‑1 (MQ=60)
CGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATA > SRR4302533.4001588/1‑94 (MQ=60)
CGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATA < SRR4302533.5954446/94‑1 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA > SRR4302533.1763243/1‑94 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA > SRR4302533.1775038/1‑94 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGCCGAGAATATA > SRR4302533.1775039/1‑94 (MQ=60)
TTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAA < SRR4302533.4565483/94‑1 (MQ=60)
TTAAAGGAATCGCCTGCCTACACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC < SRR4302533.705324/94‑1 (MQ=60)
TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC > SRR4302533.1206531/1‑94 (MQ=60)
TAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACG > SRR4302533.3483990/1‑94 (MQ=60)
TAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACG < SRR4302533.5992968/94‑1 (MQ=60)
AAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGC > SRR4302533.4595641/1‑94 (MQ=60)
AAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCA > SRR4302533.2665530/1‑94 (MQ=60)
AGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAT < SRR4302533.1496636/94‑1 (MQ=60)
AGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAT < SRR4302533.625120/94‑1 (MQ=60)
GCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATG > SRR4302533.2929623/1‑94 (MQ=60)
CAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGA < SRR4302533.3513844/94‑1 (MQ=60)
CAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGA > SRR4302533.5854549/1‑94 (MQ=60)
CAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGA > SRR4302533.450721/1‑94 (MQ=60)
AATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCCCCGTAGGGCCGAGGTCGAGAATATAACGCATGAC < SRR4302533.1727521/94‑1 (MQ=60)
ATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACT < SRR4302533.5208810/94‑1 (MQ=60)
CGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTC < SRR4302533.2306831/94‑1 (MQ=60)
GCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCT > SRR4302533.2296980/1‑94 (MQ=60)
CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG > SRR4302533.1066359/1‑94 (MQ=60)
CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG < SRR4302533.69893/94‑1 (MQ=60)
CCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTG > SRR4302533.3813586/1‑94 (MQ=60)
CTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGA < SRR4302533.3558287/94‑1 (MQ=60)
CTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGA > SRR4302533.4286316/1‑94 (MQ=60)
TGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAA < SRR4302533.5234262/94‑1 (MQ=60)
TGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAA < SRR4302533.5466431/94‑1 (MQ=60)
GCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAA > SRR4302533.4260452/1‑94 (MQ=60)
GCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAA < SRR4302533.6278070/94‑1 (MQ=60)
CCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAA > SRR4302533.3782854/1‑94 (MQ=60)
CCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAA > SRR4302533.4327557/1‑94 (MQ=60)
TTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA > SRR4302533.139615/1‑94 (MQ=60)
TCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACAT < SRR4302533.3952554/94‑1 (MQ=60)
CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA < SRR4302533.5803377/94‑1 (MQ=60)
CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA < SRR4302533.4707267/94‑1 (MQ=60)
CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA > SRR4302533.4789803/1‑94 (MQ=60)
ACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAG < SRR4302533.4571749/94‑1 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGGATATAACGCATGACTTCTGAAAACATAGG > SRR4302533.604505/1‑94 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG < SRR4302533.4656197/94‑1 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > SRR4302533.604506/1‑94 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG < SRR4302533.1241029/94‑1 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG < SRR4302533.3055591/94‑1 (MQ=60)
|
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > NC_000913/2172115‑2172301
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
