Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,225,197 |
T→C |
T32A (ACC→GCC) |
yohF ← |
putative oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,225,197 | 0 | T | C | 99.6%
| 789.0
/ ‑5.2
| 244 | T32A (ACC→GCC) | yohF | putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (122/121); total (122/122) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.11e-01 |
Only 100 of 251 total aligned reads displayed.
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG > NC_000913/2225107‑2225286
|
cGAGATCCAGCTGCACGATCTTCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa > 1:9960768/1‑93 (MQ=255)
cGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa > 1:7706449/1‑93 (MQ=255)
cGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa > 2:5769086/1‑93 (MQ=255)
cGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCaa > 2:192532/1‑93 (MQ=255)
gagaTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAt > 2:972749/1‑93 (MQ=255)
gaTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATAc < 1:6299222/93‑1 (MQ=255)
gaTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTCCATCTGAGTGCCAGGCAATAc < 1:1758428/93‑1 (MQ=255)
aTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATAcc > 1:4541212/1‑93 (MQ=255)
aTCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCCTCTTCATCTGAGTGCCAGGCAATAcc > 2:7971771/1‑93 (MQ=255)
tCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCa < 1:3657918/93‑1 (MQ=255)
ccAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCaa < 1:5838022/93‑1 (MQ=255)
cAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAat > 1:9616092/1‑93 (MQ=255)
tGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCa > 2:1362545/1‑93 (MQ=255)
gCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaa > 2:4253457/1‑93 (MQ=255)
gCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaa > 1:4258722/1‑93 (MQ=255)
cACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCaaa < 2:5721388/93‑1 (MQ=255)
gATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAccc < 1:9830525/93‑1 (MQ=255)
aTCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAAcccc > 1:3492456/1‑93 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCct < 1:1006463/93‑1 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAACCCCct > 1:3288560/1‑93 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct > 2:3789248/1‑93 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct < 1:3434570/93‑1 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct < 1:3120554/93‑1 (MQ=255)
tctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCct > 2:8634088/1‑93 (MQ=255)
ctcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctg > 1:9139590/1‑93 (MQ=255)
tcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc > 2:485491/1‑93 (MQ=255)
tcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc > 1:8594823/1‑93 (MQ=255)
tcCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc < 2:6570215/93‑1 (MQ=255)
gCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGATTGCCAGGCAATACCAATATCAAACCCCtgctgc > 1:9674476/1‑93 (MQ=255)
aCGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTgcgc < 1:9538968/93‑1 (MQ=255)
aCGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTgcgc > 1:7058217/1‑93 (MQ=255)
cGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGcc < 2:2816214/93‑1 (MQ=255)
cGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGcc > 1:8834673/1‑93 (MQ=255)
tACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAg > 1:7090053/1‑93 (MQ=255)
tACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAg > 1:7256273/1‑93 (MQ=255)
tACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAg > 1:2989175/1‑93 (MQ=255)
tACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAg > 1:4405029/1‑93 (MQ=255)
cGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGta < 1:640314/93‑1 (MQ=255)
ccGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACACCTGCCGCGCCAGtaat > 2:4674745/1‑93 (MQ=255)
cGTTGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGACAGtaata > 2:9272886/1‑93 (MQ=255)
gTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaataa < 1:6815409/93‑1 (MQ=255)
gTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGtaataa < 2:7367440/93‑1 (MQ=255)
tGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc < 2:52402/78‑1 (MQ=255)
tGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCctgc > 1:52402/1‑78 (MQ=255)
gCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGATTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAcgc < 1:7469502/93‑1 (MQ=255)
cTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAcgcg < 1:2735775/93‑1 (MQ=255)
cTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAcgcg > 1:2424888/1‑93 (MQ=255)
tAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACgcgc > 1:8045856/1‑93 (MQ=255)
cTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCAct < 2:39484/93‑1 (MQ=255)
aCCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActct < 1:751487/93‑1 (MQ=255)
aCCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCActct > 2:1965219/1‑93 (MQ=255)
cTCACGCGCGGTATCTTTTGCCCATTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCttt < 2:5500966/93‑1 (MQ=255)
tCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTg > 2:5620666/1‑93 (MQ=255)
tCACGCGCGGTATCTTTGGCCCCCTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTg < 2:290237/93‑1 (MQ=255)
cACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGc < 1:4014091/93‑1 (MQ=255)
aCGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGcc < 1:1643224/93‑1 (MQ=255)
gcgGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATc > 2:3165612/1‑93 (MQ=255)
gcgGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATc > 1:8444903/1‑93 (MQ=255)
cgGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcc > 2:9044675/1‑93 (MQ=255)
ggTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATccc < 1:4984228/93‑1 (MQ=255)
gTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcccc > 2:8369493/1‑93 (MQ=255)
gTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcccc < 2:2466341/93‑1 (MQ=255)
gTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATcccc < 2:6642781/93‑1 (MQ=255)
tATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCg > 2:2164360/1‑93 (MQ=255)
aTCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAACCCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGa < 2:6184207/93‑1 (MQ=255)
tCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGaa > 1:3865234/1‑93 (MQ=255)
cTTTTGCCCCGTCTTCGTCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAAt < 2:5151528/93‑1 (MQ=255)
ttttGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATc > 1:4031677/1‑93 (MQ=255)
tttGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCg < 2:6890215/93‑1 (MQ=255)
ttGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCgg < 1:1546/93‑1 (MQ=255)
tGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGa < 2:2666561/93‑1 (MQ=255)
tGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGa > 2:2208132/1‑93 (MQ=255)
gCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAg > 1:890201/1‑93 (MQ=255)
gCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAg < 1:5648258/93‑1 (MQ=255)
gCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAg < 1:5443080/93‑1 (MQ=255)
ccccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAgg > 1:7019428/1‑93 (MQ=255)
ccccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGAT‑CCCGAATCGGAGGc < 1:864303/93‑1 (MQ=255)
cccTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGc < 1:2032148/93‑1 (MQ=255)
ttcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGt > 1:5745163/1‑93 (MQ=255)
tcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGta > 1:6945664/1‑93 (MQ=255)
tcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGta > 2:9359043/1‑93 (MQ=255)
tcttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGta < 2:3882422/93‑1 (MQ=255)
cttcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaa > 2:717428/1‑93 (MQ=255)
tcATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaata < 2:6389876/93‑1 (MQ=255)
cATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaataa > 1:3588122/1‑93 (MQ=255)
cATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaataa < 2:3657243/93‑1 (MQ=255)
cATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGtaataa > 1:3009687/1‑93 (MQ=255)
aTCTGAGTGCCAGGCAATACCAATATCAATCCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTaataat < 1:9177226/93‑1 (MQ=255)
aTCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTaataat > 2:1436490/1‑93 (MQ=255)
aTCTGAGTGCAAGGCAATACCAATATGAAGCCCCTGCTGCGCCAGTAATAACGCGCGCTCTTTGCCCATCCCCGAATCGGAGGCGGTaataat < 2:1041735/93‑1 (MQ=255)
tCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATc < 2:8262921/93‑1 (MQ=255)
aGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCaa < 1:1939465/93‑1 (MQ=255)
gTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAAc < 2:7991415/93‑1 (MQ=255)
gCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCt < 2:3236393/93‑1 (MQ=255)
ccAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtg < 1:8277650/93‑1 (MQ=255)
cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt < 1:8009849/93‑1 (MQ=255)
cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt < 1:7388674/93‑1 (MQ=255)
cAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgt < 1:9788760/93‑1 (MQ=255)
aGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgtg > 2:417157/1‑93 (MQ=255)
aGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCtgtg < 2:7545115/93‑1 (MQ=255)
|
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG > NC_000913/2225107‑2225286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT > NC_000913/2225104‑2225290
|
TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGC < SRR4302540.3139655/94‑1 (MQ=60)
CCGAGATCCAGCTGCACGATCTTCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAA > SRR4302540.10076999/1‑94 (MQ=60)
CCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAA > SRR4302540.7794775/1‑94 (MQ=60)
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAT < SRR4302540.1582259/94‑1 (MQ=60)
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAAT > SRR4302540.3821575/1‑94 (MQ=60)
CGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTACCAGGCAAT < SRR4302540.7167097/94‑1 (MQ=60)
GAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATA < SRR4302540.8346635/94‑1 (MQ=60)
GAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATA > SRR4302540.7089148/1‑94 (MQ=60)
GAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTCAGTGCCAGGCAATA > SRR4302540.7089149/1‑94 (MQ=60)
GAGATCCAGCTGCACGATCTCCGCACCTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATA < SRR4302540.8683162/94‑1 (MQ=60)
GATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACC < SRR4302540.6369367/94‑1 (MQ=60)
GATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACC < SRR4302540.7420830/94‑1 (MQ=60)
GATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACC > SRR4302540.4590358/1‑94 (MQ=60)
GATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTCCATCTGAGTGCCAGGCAATACC < SRR4302540.1777488/94‑1 (MQ=60)
ATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCA < SRR4302540.5170100/94‑1 (MQ=60)
ATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCA < SRR4302540.8160464/94‑1 (MQ=60)
TCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAA < SRR4302540.3697972/94‑1 (MQ=60)
CCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAAT < SRR4302540.2114516/94‑1 (MQ=60)
CCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAAT < SRR4302540.5902577/94‑1 (MQ=60)
CCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAAT > SRR4302540.9729461/1‑94 (MQ=60)
CAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATA > SRR4302540.5848771/1‑94 (MQ=60)
CGCTGCACGATCTCCGCACGTACGCCGTGGCTGACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATAT < SRR4302540.9995182/94‑1 (MQ=60)
AGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATAT < SRR4302540.6369375/94‑1 (MQ=60)
CTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCA < SRR4302540.980781/94‑1 (MQ=60)
TGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAA > SRR4302540.4305049/1‑94 (MQ=60)
TGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAA > SRR4302540.7335296/1‑94 (MQ=60)
TGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAA > SRR4302540.1638662/1‑94 (MQ=60)
TGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAA > SRR4302540.1162180/1‑94 (MQ=60)
GCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAA < SRR4302540.6837483/94‑1 (MQ=60)
GATCTCCGCGCGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCC < SRR4302540.9698068/94‑1 (MQ=60)
GATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCC < SRR4302540.9945502/94‑1 (MQ=60)
GATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCC < SRR4302540.9945501/94‑1 (MQ=60)
GATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCC > SRR4302540.3530492/1‑94 (MQ=60)
ATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAACCCCCT > SRR4302540.3324533/1‑94 (MQ=60)
ATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCT < SRR4302540.6600921/94‑1 (MQ=60)
ATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCT > SRR4302540.328341/1‑94 (MQ=60)
TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTG < SRR4302540.1016669/94‑1 (MQ=60)
TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG < SRR4302540.3471908/94‑1 (MQ=60)
TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG > SRR4302540.9249396/1‑94 (MQ=60)
TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG < SRR4302540.3154658/94‑1 (MQ=60)
TCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTG < SRR4302540.3127654/94‑1 (MQ=60)
CTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGC > SRR4302540.8694729/1‑94 (MQ=60)
CTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGC > SRR4302540.1834457/1‑94 (MQ=60)
CTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGC < SRR4302540.3100767/94‑1 (MQ=60)
cccccccgtccgcccaggcaaacatcctaacgcacgatatcacTTGCCCCTTCTTCATCTGAGACCCAGGCAATACCAATACCAAACCCCTGCT < SRR4302540.9099943/51‑1 (MQ=30)
TCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCT < SRR4302540.877487/94‑1 (MQ=60)
CGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGATTGCCAGGCAATACCAATATCAAACCCCTGCTGC > SRR4302540.9788309/1‑94 (MQ=60)
CACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGC > SRR4302540.7136708/1‑94 (MQ=60)
ACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCC > SRR4302540.8936857/1‑94 (MQ=60)
ACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCC < SRR4302540.9651859/94‑1 (MQ=60)
GTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAG > SRR4302540.7168950/1‑94 (MQ=60)
GTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAG > SRR4302540.4452791/1‑94 (MQ=60)
GTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAG > SRR4302540.4452790/1‑94 (MQ=60)
GTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAG > SRR4302540.7337240/1‑94 (MQ=60)
GTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAG > SRR4302540.3022139/1‑94 (MQ=60)
CGTCGTGGCTAACTTCCTCGCGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAA < SRR4302540.3009039/94‑1 (MQ=60)
CGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAA < SRR4302540.647137/94‑1 (MQ=60)
ccgttgccacCTACCTCACGAGCGGTTTCTTATGCCCCTTCTTCATCTGAGTGCCAGGCAATGCCAATATCAAACCCCTGCTGCGCCAGTAATA < SRR4302540.3581197/84‑1 (MQ=60)
CCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCGCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCCGTAATA < SRR4302540.8768682/94‑1 (MQ=60)
CGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAA > SRR4302540.2115000/1‑94 (MQ=60)
GTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTaagcgctagatcgg > SRR4302540.52925/1‑80 (MQ=60)
GTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAAC < SRR4302540.6890846/94‑1 (MQ=60)
TGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACG > SRR4302540.5414654/1‑94 (MQ=60)
TGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACG < SRR4302540.3611013/94‑1 (MQ=60)
GCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGATTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCG < SRR4302540.7552836/94‑1 (MQ=60)
GCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCG > SRR4302540.2451011/1‑94 (MQ=60)
CTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGC < SRR4302540.2765306/94‑1 (MQ=60)
CTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGC < SRR4302540.3391286/94‑1 (MQ=60)
CTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGC > SRR4302540.8139331/1‑94 (MQ=60)
CTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTC > SRR4302540.9639657/1‑94 (MQ=60)
ACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTT < SRR4302540.759493/94‑1 (MQ=60)
CCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTT < SRR4302540.9320024/94‑1 (MQ=60)
CCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTT < SRR4302540.532793/94‑1 (MQ=60)
CTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTG > SRR4302540.3688379/1‑94 (MQ=60)
CGCGCTCGGTATTTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTTCTGCGCCAGTAATAACGCGCACTCTTTGCC < SRR4302540.7138585/94‑1 (MQ=60)
CACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCC < SRR4302540.4057331/94‑1 (MQ=60)
ACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCG < SRR4302540.1661178/94‑1 (MQ=60)
gaccgggatttttgtgCCCTTCTGCATCTGAGTGCCAGGCAATACCAATATCAAACCCCGGCTGCGCCAGTAATAACGCGCACTCTTTGCCGAT < SRR4302540.8237139/78‑1 (MQ=60)
CGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATC > SRR4302540.8584194/1‑94 (MQ=60)
CGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATC > SRR4302540.8542937/1‑94 (MQ=60)
CGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATC < SRR4302540.3852750/94‑1 (MQ=60)
GCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCC > SRR4302540.5780540/1‑94 (MQ=60)
CGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATACCGCGCACTCTTTGCCGATCCC > SRR4302540.5801924/1‑94 (MQ=60)
CGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCC < SRR4302540.5004943/94‑1 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC > SRR4302540.8697964/1‑94 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC > SRR4302540.8103959/1‑94 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC < SRR4302540.4058403/94‑1 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC < SRR4302540.7925994/94‑1 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC < SRR4302540.5038189/94‑1 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC < SRR4302540.4058404/94‑1 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTGCCACGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC > SRR4302540.9883256/1‑94 (MQ=60)
GGTATCTTTTGCCCCTTCTTCATCTGAGTCCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCC < SRR4302540.8966460/94‑1 (MQ=60)
GTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCG < SRR4302540.91940/94‑1 (MQ=60)
GTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCG < SRR4302540.5582649/94‑1 (MQ=60)
ATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAA > SRR4302540.8431936/1‑94 (MQ=60)
ATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAA > SRR4302540.7579911/1‑94 (MQ=60)
ATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAA > SRR4302540.7579910/1‑94 (MQ=60)
ATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAA > SRR4302540.3907250/1‑94 (MQ=60)
TCTTTTGTCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAAT > SRR4302540.4398424/1‑94 (MQ=60)
CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC > SRR4302540.4075151/1‑94 (MQ=60)
CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC > SRR4302540.6001458/1‑94 (MQ=60)
CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC < SRR4302540.7730351/94‑1 (MQ=60)
CTTTTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATC > SRR4302540.6001457/1‑94 (MQ=60)
TTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGA < SRR4302540.1558/94‑1 (MQ=60)
TTGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGA > SRR4302540.4450318/1‑94 (MQ=60)
TGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAG > SRR4302540.899660/1‑94 (MQ=60)
TGCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAG < SRR4302540.4645725/94‑1 (MQ=60)
GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGG < SRR4302540.5710428/94‑1 (MQ=60)
GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGG > SRR4302540.7097395/1‑94 (MQ=60)
GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGG > SRR4302540.7097392/1‑94 (MQ=60)
GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGG < SRR4302540.5502972/94‑1 (MQ=60)
GCCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAAG < SRR4302540.4241564/94‑1 (MQ=60)
CCCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGAT‑CCCGAATCGGAGGCG < SRR4302540.873484/94‑1 (MQ=60)
CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCG < SRR4302540.2054075/94‑1 (MQ=60)
CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCG < SRR4302540.1868023/94‑1 (MQ=60)
CCCTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCG > SRR4302540.9208020/1‑94 (MQ=60)
CTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGT > SRR4302540.5808510/1‑94 (MQ=60)
CTTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGT > SRR4302540.743904/1‑94 (MQ=60)
TTCTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTA > SRR4302540.7022969/1‑94 (MQ=60)
CTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAAT < SRR4302540.1767520/94‑1 (MQ=60)
CTTCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAAA > SRR4302540.3525256/1‑94 (MQ=60)
TCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAA < SRR4302540.9285194/94‑1 (MQ=60)
TCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAA > SRR4302540.3042800/1‑94 (MQ=60)
TCATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAA > SRR4302540.3627311/1‑94 (MQ=60)
ATCTGAGTGCCAGGCAATACCAATATCAATCCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATC < SRR4302540.9287299/94‑1 (MQ=60)
ATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATC < SRR4302540.9777525/94‑1 (MQ=60)
ATCTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATC > SRR4302540.4046320/1‑94 (MQ=60)
CTGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGC < SRR4302540.7490385/94‑1 (MQ=60)
TGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCA < SRR4302540.3458053/94‑1 (MQ=60)
TGAGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCA > SRR4302540.2021045/1‑94 (MQ=60)
AGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAAC < SRR4302540.2544976/94‑1 (MQ=60)
AGTGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAAC < SRR4302540.1960586/94‑1 (MQ=60)
TGCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCT > SRR4302540.6894341/1‑94 (MQ=60)
GCCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTG < SRR4302540.3033982/94‑1 (MQ=60)
CCAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGT < SRR4302540.8373800/94‑1 (MQ=60)
CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG < SRR4302540.9903438/94‑1 (MQ=60)
CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG < SRR4302540.8103037/94‑1 (MQ=60)
CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG < SRR4302540.7471000/94‑1 (MQ=60)
CAGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG < SRR4302540.10063062/94‑1 (MQ=60)
CAGGCAATACCAAGATCAAGCTCCTGCTGCGCCAGTAATAACGCGCGCTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTG < SRR4302540.2852563/94‑1 (MQ=60)
AGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGC > SRR4302540.9620230/1‑94 (MQ=60)
AGGCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGC < SRR4302540.969364/94‑1 (MQ=60)
GCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCA > SRR4302540.7147348/1‑94 (MQ=60)
GCAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCA > SRR4302540.657478/1‑94 (MQ=60)
CAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT < SRR4302540.7844997/94‑1 (MQ=60)
CAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT < SRR4302540.3328700/94‑1 (MQ=60)
CAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT > SRR4302540.8470765/1‑94 (MQ=60)
CAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT > SRR4302540.8827947/1‑94 (MQ=60)
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TGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCTGAGTGCCAGGTAATACCAATATCAAACCCCTGCTGCGCCAGTAATAACGCGCACTCTTTGCCGATCCCCGAATCGGAGGCGGTAATAATCGCAACCTGTGCCAT > NC_000913/2225104‑2225290
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
