Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,290,493 |
A→G |
N164N (AAT→AAC) |
dsbE ← |
disulfide oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,290,493 | 0 | A | G | 99.6%
| 862.4
/ ‑5.2
| 268 | N164N (AAT→AAC) | dsbE | disulfide oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (100/167); total (100/168) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.13e-01 |
Only 100 of 281 total aligned reads displayed.
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
catcagcaCGCCCAATAAAAACCTCATTGTGCGTCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTc < 1:281711/93‑1 (MQ=255)
catcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTc < 1:5405732/93‑1 (MQ=255)
catcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTc < 1:2393592/93‑1 (MQ=255)
atcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCa < 2:2857137/93‑1 (MQ=255)
atcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCa < 2:5134070/93‑1 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg > 1:55556/1‑93 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg > 2:4659205/1‑93 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg > 2:7148828/1‑93 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg < 2:8152558/93‑1 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa < 2:8737201/93‑1 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa < 1:1596183/93‑1 (MQ=255)
gcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATc < 1:4775820/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 2:2548676/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 1:9810122/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 1:4593608/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCCAGGGGTCAGATCGcc > 1:7327399/1‑93 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc > 1:7249065/1‑93 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc > 1:3589472/1‑93 (MQ=255)
ccAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGc > 2:3414326/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 1:5706545/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 2:4840843/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 2:6656743/93‑1 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt < 2:5426247/93‑1 (MQ=255)
tAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATgg < 1:1875052/93‑1 (MQ=255)
tAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATgg > 1:2176533/1‑93 (MQ=255)
aaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGc < 1:3037589/93‑1 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGa < 1:5349562/93‑1 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGa > 2:4979890/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa < 1:2891993/93‑1 (MQ=255)
ccTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAg < 1:7283544/93‑1 (MQ=255)
cTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGc > 1:4453191/1‑93 (MQ=255)
tCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGGGATAGCg > 2:2227985/1‑93 (MQ=255)
aTTGTGCGGCCTCCTTACTGTGTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa < 1:6676048/93‑1 (MQ=255)
ttGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGCGAat > 1:8371715/1‑93 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:8015988/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:6891813/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:6619514/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:1985991/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:1267963/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGCGAatga > 2:312805/1‑93 (MQ=255)
gggCCTCCTTACTGTATTTCCCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 1:8626814/92‑1 (MQ=255)
cGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 1:9140580/93‑1 (MQ=255)
ggCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgcc < 1:5972708/93‑1 (MQ=255)
gCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccg < 2:8596836/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 1:5180327/93‑1 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc > 2:3747041/1‑93 (MQ=255)
ctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgcc > 1:8858590/1‑93 (MQ=255)
tACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgccgc > 1:3299825/1‑92 (MQ=255)
aCTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTc < 1:9562785/93‑1 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 2:5334695/93‑1 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 2:498359/93‑1 (MQ=255)
gTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAt > 2:7993532/1‑93 (MQ=255)
gTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAt < 2:7260125/93‑1 (MQ=255)
tATTTCTCCCACAGCGGCTTGATCTCTTCTTCACAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATa < 1:1188440/93‑1 (MQ=255)
tttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAg > 2:4504077/1‑93 (MQ=255)
tctcCCACAGCGGCTTGTTCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa < 1:1112408/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa < 1:6258866/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCCAGGGTTCACATCGCCCGCATTGCGATAGTGAATGATGCCGTTTCCCACAAtaataa > 2:6360003/1‑93 (MQ=255)
ctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaaa < 1:526669/93‑1 (MQ=255)
cccACAGCGTCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg < 2:1774992/93‑1 (MQ=255)
cccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg > 1:7494805/1‑93 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt > 1:9660591/1‑93 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt < 2:95215/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt < 2:1641763/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt > 1:787420/1‑93 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGtt < 1:4513408/93‑1 (MQ=255)
caGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc < 2:9732683/93‑1 (MQ=255)
caGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc < 1:3888653/93‑1 (MQ=255)
aGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCt < 2:1837555/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 2:103948/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg > 1:3504740/1‑93 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 1:1301172/93‑1 (MQ=255)
cGGGTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg < 1:5324525/93‑1 (MQ=255)
cGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg < 2:760780/93‑1 (MQ=255)
gCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcg > 2:9353033/1‑93 (MQ=255)
gCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcg > 1:3113599/1‑93 (MQ=255)
cTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgc < 2:3894058/93‑1 (MQ=255)
ttGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcg > 2:10015961/1‑93 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 2:7009479/93‑1 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCACATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 1:902523/93‑1 (MQ=255)
tctcTTCTGCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 2:6007805/93‑1 (MQ=255)
ttcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGac < 1:9203109/93‑1 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca > 2:6466904/1‑93 (MQ=255)
cttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGacac < 2:8341003/93‑1 (MQ=255)
ttcCCAGACGCGAGGGTTCAGCTCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTAAATAAGAAACGTTTCTGGCGCGCCATAGACAcc > 1:3750208/1‑93 (MQ=255)
aGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAt < 2:4354385/93‑1 (MQ=255)
gACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATc > 2:8078287/1‑93 (MQ=255)
gACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATc < 2:739871/93‑1 (MQ=255)
aCGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATcc < 2:7476943/93‑1 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa < 2:3993038/93‑1 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa < 2:4235014/93‑1 (MQ=255)
gcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATGCAg > 1:2604710/1‑93 (MQ=255)
gcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAg > 2:5959521/1‑93 (MQ=255)
gcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAg > 1:2773744/1‑93 (MQ=255)
cgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGc < 1:3993879/93‑1 (MQ=255)
cgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGc > 1:4144759/1‑93 (MQ=255)
gAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGcc < 2:6945307/93‑1 (MQ=255)
gAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGcc < 1:7566723/93‑1 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc > 2:6194104/1‑93 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc > 2:2644603/1‑93 (MQ=255)
|
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290400‑2290586
|
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGG > SRR4302540.5912818/1‑94 (MQ=60)
CATCAGCACGCCCAATAAAAACCTCATTGTGCGTCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCA < SRR4302540.284476/94‑1 (MQ=60)
CATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCA < SRR4302540.5465170/94‑1 (MQ=60)
CATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCA < SRR4302540.2419384/94‑1 (MQ=60)
CATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCA > SRR4302540.2925704/1‑94 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAG > SRR4302540.56113/1‑94 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302540.1613625/94‑1 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302540.5345931/94‑1 (MQ=60)
AGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATC < SRR4302540.6777156/94‑1 (MQ=60)
AGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATC > SRR4302540.7190402/1‑94 (MQ=60)
GCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCG < SRR4302540.4647590/94‑1 (MQ=60)
GCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCG < SRR4302540.4826847/94‑1 (MQ=60)
CACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGActgc > SRR4302540.415762/1‑90 (MQ=60)
CACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGC > SRR4302540.415761/1‑94 (MQ=60)
ACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCCAGGGGTCAGATCGCC > SRR4302540.7409212/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC < SRR4302540.4643033/94‑1 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC > SRR4302540.3628682/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC > SRR4302540.7329953/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC < SRR4302540.7607063/94‑1 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC < SRR4302540.9924934/94‑1 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCC > SRR4302540.1871098/1‑94 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT < SRR4302540.5769369/94‑1 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT < SRR4302540.7345465/94‑1 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT > SRR4302540.5554139/1‑94 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302540.6364511/94‑1 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302540.2658969/94‑1 (MQ=60)
AATAAAAACCTCAGTGTGCGGCCTCCTTACTGTATTTCTCCCACATCGGCTTGATCTCTTCTTGCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302540.5108439/94‑1 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG < SRR4302540.1420505/94‑1 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG > SRR4302540.5620260/1‑94 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG > SRR4302540.2200007/1‑94 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG < SRR4302540.7703423/94‑1 (MQ=60)
TAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGT > SRR4302540.356159/1‑94 (MQ=60)
TAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGC < SRR4302540.1895591/94‑1 (MQ=60)
AAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCG < SRR4302540.3070930/94‑1 (MQ=60)
AAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCG < SRR4302540.6000510/94‑1 (MQ=60)
AAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAT < SRR4302540.5408264/94‑1 (MQ=60)
AAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAT < SRR4302540.5408263/94‑1 (MQ=60)
AACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATA > SRR4302540.5035676/1‑94 (MQ=60)
AACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATA < SRR4302540.8540845/94‑1 (MQ=60)
ACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAG < SRR4302540.2923516/94‑1 (MQ=60)
ACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAG < SRR4302540.2923512/94‑1 (MQ=60)
ACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAG < SRR4302540.2856752/94‑1 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC > SRR4302540.9169061/1‑94 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC < SRR4302540.7364824/94‑1 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGC > SRR4302540.4501465/1‑94 (MQ=60)
CATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAA > SRR4302540.9257114/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTGTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302540.6749796/94‑1 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT > SRR4302540.2176736/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302540.9123801/94‑1 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302540.5319601/94‑1 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGGTCGCCCGCATGGCGATAGCGAAT > SRR4302540.6283942/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGCGAAT > SRR4302540.8468868/1‑94 (MQ=60)
TGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGA > SRR4302540.747768/1‑94 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.6968258/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.5540991/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.6692811/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.8109227/94‑1 (MQ=60)
GTCCGGCCGCCTTACTGGATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.6692536/94‑1 (MQ=60)
GGGCGGCCTCCTTACGTGATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTGCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302540.4807995/94‑1 (MQ=60)
TGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATG > SRR4302540.8633915/1‑94 (MQ=60)
GGGCCTCCTTACTGTATTTCCCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302540.8727024/94‑1 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302540.3849177/94‑1 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302540.9250395/94‑1 (MQ=60)
GGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCG < SRR4302540.6038814/94‑1 (MQ=60)
GGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCG < SRR4302540.5280030/94‑1 (MQ=60)
GCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGT < SRR4302540.3619466/94‑1 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG < SRR4302540.5236710/94‑1 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC > SRR4302540.8961096/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC > SRR4302540.6771435/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAAGCCGTTGCC < SRR4302540.1129725/94‑1 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCG > SRR4302540.7776106/1‑94 (MQ=60)
TTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGT > SRR4302540.9637671/1‑94 (MQ=60)
TTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGC > SRR4302540.3335947/1‑94 (MQ=60)
ACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCA < SRR4302540.9675827/94‑1 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT > SRR4302540.9775406/1‑94 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302540.8030352/94‑1 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302540.5433371/94‑1 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302540.1706482/94‑1 (MQ=60)
gatttcccccaccaggggtttgactccTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302540.6743129/67‑1 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCACAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302540.1200692/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302540.2345164/94‑1 (MQ=60)
TCTCCCACAGCGGCTTGTTCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAA < SRR4302540.1123925/94‑1 (MQ=60)
TCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAA < SRR4302540.6328503/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGCCGCGCGGGTTCAGATCGCCCGCATGGCGATAGCGCATGATGCCGTTGGCGGCAATAAGAAAC > SRR4302540.2618911/1‑94 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302540.532360/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302540.5711619/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302540.6969729/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302540.3973436/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC > SRR4302540.2618912/1‑94 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGCTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGCTGCCGTCAATAAGAAAC > SRR4302540.2832482/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG > SRR4302540.9735769/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG > SRR4302540.7578517/1‑94 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT > SRR4302540.9774306/1‑94 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT > SRR4302540.795792/1‑94 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT < SRR4302540.3201617/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT > SRR4302540.4256181/1‑94 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT < SRR4302540.7641942/94‑1 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT < SRR4302540.3471004/94‑1 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT < SRR4302540.4562307/94‑1 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT < SRR4302540.745001/94‑1 (MQ=60)
ACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTC < SRR4302540.120872/94‑1 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302540.39775/94‑1 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302540.3930881/94‑1 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG > SRR4302540.3542919/1‑94 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG < SRR4302540.7403904/94‑1 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG > SRR4302540.3081490/1‑94 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG < SRR4302540.900723/94‑1 (MQ=60)
GCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGG < SRR4302540.1314660/94‑1 (MQ=60)
CGGGTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGC < SRR4302540.5382843/94‑1 (MQ=60)
CGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGC < SRR4302540.3490130/94‑1 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG > SRR4302540.3147649/1‑94 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG > SRR4302540.10062035/1‑94 (MQ=60)
CGCTTGAGCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG < SRR4302540.8863616/94‑1 (MQ=60)
GCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGC > SRR4302540.3845365/1‑94 (MQ=60)
GCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCTCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGC > SRR4302540.5330716/1‑94 (MQ=60)
CTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCG > SRR4302540.7408960/1‑94 (MQ=60)
TTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGC > SRR4302540.5854045/1‑94 (MQ=60)
TGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCC > SRR4302540.2664500/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCA > SRR4302540.1236233/1‑94 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT < SRR4302540.8878308/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT > SRR4302540.4318364/1‑94 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA > SRR4302540.9745253/1‑94 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302540.8001669/94‑1 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCACATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302540.912108/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302540.5393364/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC > SRR4302540.3211250/1‑94 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC > SRR4302540.9855436/1‑94 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC > SRR4302540.1408259/1‑94 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA < SRR4302540.3072984/94‑1 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA < SRR4302540.9313534/94‑1 (MQ=60)
CTTCCCAGACGCGAGGGTTCAGCTCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTAAATAAGAAACGTTTCTGGCGCGCCATAGACACC > SRR4302540.3791127/1‑94 (MQ=60)
CTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACC < SRR4302540.8280445/94‑1 (MQ=60)
CTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACC < SRR4302540.4615012/94‑1 (MQ=60)
CTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACC < SRR4302540.2013269/94‑1 (MQ=60)
ccccgAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCG < SRR4302540.1593935/89‑1 (MQ=60)
TTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCG < SRR4302540.3648973/94‑1 (MQ=60)
CCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGA > SRR4302540.4514150/1‑94 (MQ=60)
CAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAACGAGAT > SRR4302540.281716/1‑94 (MQ=60)
AGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATC < SRR4302540.4534640/94‑1 (MQ=60)
AGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATC > SRR4302540.9169738/1‑94 (MQ=60)
GACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCC < SRR4302540.6693576/94‑1 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATGCAG > SRR4302540.2632809/1‑94 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG > SRR4302540.2803715/1‑94 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG < SRR4302540.10034257/94‑1 (MQ=60)
GCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGC > SRR4302540.4189614/1‑94 (MQ=60)
GCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGC > SRR4302540.2430561/1‑94 (MQ=60)
CGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCC < SRR4302540.4036860/94‑1 (MQ=60)
GAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC < SRR4302540.9387444/94‑1 (MQ=60)
GAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC < SRR4302540.7651601/94‑1 (MQ=60)
GGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > SRR4302540.538645/1‑94 (MQ=60)
GGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAA > SRR4302540.2047129/1‑94 (MQ=60)
GGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAA < SRR4302540.3175006/94‑1 (MQ=60)
GTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > SRR4302540.9159171/1‑94 (MQ=60)
GTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC < SRR4302540.3309657/94‑1 (MQ=60)
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TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290400‑2290586
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
