Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,296,123	T→C	T53A (ACC→GCC)	napC ←	cytochrome c‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,296,123	0	T	C	99.6%	909.1 / ‑6.2	280	T53A (ACC→GCC)	napC	cytochrome c‑type protein
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (140/139); total (141/139)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 290 total aligned reads displayed.

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAC  >  NC_000913/2296033‑2296212

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                         <  1:6265651/93‑1 (MQ=255)

  ccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTg                                                                                       <  1:4888101/93‑1 (MQ=255)

    gcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGc                                                                                     >  1:2989787/1‑93 (MQ=255)

    gcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAACACTCTTCGGCATTGGc                                                                                     >  1:7209387/1‑93 (MQ=255)

     cTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCt                                                                                    >  1:8270174/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   >  2:5873843/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   <  2:2211450/93‑1 (MQ=255)

        cGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtttt                                                                                 <  1:2327650/93‑1 (MQ=255)

        cGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtttt                                                                                 <  1:3817755/93‑1 (MQ=255)

         ggTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttttt                                                                                >  2:5487560/1‑93 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTc                                                                               >  1:7379372/1‑93 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTc                                                                               >  1:5491493/1‑93 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTc                                                                               <  1:5341598/93‑1 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTCATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAAATCTTCGGCATTGGCTTTTTc                                                                               >  2:5589027/1‑93 (MQ=255)

           ttgttgTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTcc                                                                              <  2:6778177/93‑1 (MQ=255)

             gttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAt                                                                            >  1:622434/1‑93 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                           <  1:6885166/93‑1 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                           <  2:7239278/93‑1 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                           <  2:4972691/93‑1 (MQ=255)

               tgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATcc                                                                          <  1:8421065/93‑1 (MQ=255)

                gtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATccc                                                                         <  2:3249276/93‑1 (MQ=255)

                gtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATccc                                                                         >  2:9640828/1‑93 (MQ=255)

                   gTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgt                                                                      <  1:950386/93‑1 (MQ=255)

                   gTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgt                                                                      <  2:5147615/93‑1 (MQ=255)

                     gCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgtgt                                                                    <  1:3372957/93‑1 (MQ=255)

                      cACGGAATCCATGTATTCCTGATCCACCGTGTTGCGCCTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGtt                                                                   <  1:430262/93‑1 (MQ=255)

                       aCGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTa                                                                  >  1:595529/1‑93 (MQ=255)

                        cGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaa                                                                 <  2:7693211/93‑1 (MQ=255)

                          gAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAg                                                               >  2:9099359/1‑93 (MQ=255)

                          gAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAg                                                               >  2:8085405/1‑93 (MQ=255)

                           aaTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGc                                                              <  1:1658831/93‑1 (MQ=255)

                           aaTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGc                                                              >  1:7748284/1‑93 (MQ=255)

                            aTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGcc                                                             >  2:8401287/1‑93 (MQ=255)

                            aTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGcc                                                             <  1:5872108/93‑1 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                            >  2:9791025/1‑93 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                            >  1:65289/1‑93 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                            >  2:8141376/1‑93 (MQ=255)

                              ccATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCACGGTGTTAAAGCCAc                                                           >  2:6687646/1‑93 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcc                                                          >  1:2492293/1‑93 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcc                                                          >  1:4148307/1‑93 (MQ=255)

                                aTGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAccc                                                         >  2:3494227/1‑93 (MQ=255)

                                 tttATTCCTGATACACCGTGTTGCTCATTTGGTGGCAGCTAAGGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcccc                                                        <  1:2827340/91‑1 (MQ=255)

                                 tGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcccc                                                        >  2:4600597/1‑93 (MQ=255)

                                  gTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCa                                                       <  1:5823050/93‑1 (MQ=255)

                                  gTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCa                                                       >  2:7062719/1‑93 (MQ=255)

                                   tATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCag                                                      <  2:2680315/93‑1 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    <  2:8536966/93‑1 (MQ=255)

                                      tCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaag                                                   <  2:3961209/93‑1 (MQ=255)

                                       ccTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaaga                                                  >  2:4071990/1‑93 (MQ=255)

                                       ccTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaaga                                                  <  2:2468653/93‑1 (MQ=255)

                                       ccTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaaga                                                  <  1:4844223/93‑1 (MQ=255)

                                         tGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACg                                                >  2:1793168/1‑93 (MQ=255)

                                          gATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGa                                               >  2:3714045/1‑93 (MQ=255)

                                          gATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGa                                               <  2:3825742/93‑1 (MQ=255)

                                            tACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATg                                             >  2:1678168/1‑93 (MQ=255)

                                            tACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATg                                             >  1:6183620/1‑93 (MQ=255)

                                               acCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgcag                                          >  1:5120902/1‑91 (MQ=255)

                                                 cGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgcc                                        >  1:9387551/1‑93 (MQ=255)

                                                 cGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgcc                                        >  2:3049060/1‑93 (MQ=255)

                                                  gtgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCca                                       >  2:691715/1‑93 (MQ=255)

                                                   tgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaa                                      >  2:782528/1‑93 (MQ=255)

                                                     ttGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaaca                                    >  1:7976481/1‑93 (MQ=255)

                                                     ttGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaaca                                    >  2:1559262/1‑93 (MQ=255)

                                                      tGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaacaa                                   >  2:2861742/1‑93 (MQ=255)

                                                       gcgcATTTCGTGGCAGCTAATGCAGAACTTTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACaaa                                  <  1:8646227/93‑1 (MQ=255)

                                                         gcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAc                                <  2:9419236/93‑1 (MQ=255)

                                                         gcATGTCGTGGCAGCTAATGCAGTAGCCTTCGGCATTGGCTTTTTCCATCCCGGTTTGAAAGCCACCCCAGAAGACGATGCCGTCAACAAAAc                                <  2:6861243/93‑1 (MQ=255)

                                                          cATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAcc                               <  2:89716/93‑1 (MQ=255)

                                                           aTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                              <  2:2306610/93‑1 (MQ=255)

                                                            tttCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGa                             <  1:9647141/93‑1 (MQ=255)

                                                               cGTGGCAGCTAATGCAGAACTCTTCTGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCa                          <  1:504751/93‑1 (MQ=255)

                                                               cGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCa                          >  2:614081/1‑93 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTTCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  1:4002515/93‑1 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  1:316223/93‑1 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  2:7363968/93‑1 (MQ=255)

                                                                  ggCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAca                       <  1:1406372/93‑1 (MQ=255)

                                                                    cAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagc                     <  1:9232621/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                    <  2:9595378/93‑1 (MQ=255)

                                                                      gCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagcag                   >  2:2055362/1‑93 (MQ=255)

                                                                      gCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagcag                   >  2:1356164/1‑93 (MQ=255)

                                                                      gCTAATGCAGAACTCTTCGGCATTGACTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagcag                   <  2:1174429/93‑1 (MQ=255)

                                                                       cTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACagcagc                  >  1:9921735/1‑93 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                 <  1:4575735/93‑1 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                 >  1:8113164/1‑93 (MQ=255)

                                                                         aaTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCACAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCgc                >  1:9165684/1‑92 (MQ=255)

                                                                          aTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTc               <  1:1819789/93‑1 (MQ=255)

                                                                          aTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTc               <  1:3583713/93‑1 (MQ=255)

                                                                          aTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTc               >  2:860981/1‑93 (MQ=255)

                                                                           tGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACACCAGCGTcc              >  1:1120159/1‑93 (MQ=255)

                                                                            gCAGAACTCTTCGGCATTGGCTTTTTCCATCCGGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTccc             <  2:8877725/93‑1 (MQ=255)

                                                                             cAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTcccc            <  2:1262613/93‑1 (MQ=255)

                                                                                 aCTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAgcg        >  2:1712567/1‑93 (MQ=255)

                                                                                   tctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGcc      <  1:5575171/93‑1 (MQ=255)

                                                                                   tctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGcc      >  1:7500319/1‑93 (MQ=255)

                                                                                   tctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGcc      >  2:19298/1‑93 (MQ=255)

                                                                                    ctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCa     <  2:4526290/93‑1 (MQ=255)

                                                                                     ttCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAg    >  1:5722131/1‑93 (MQ=255)

                                                                                      tCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGa   >  1:697151/1‑93 (MQ=255)

                                                                                      tCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGa   <  1:227933/93‑1 (MQ=255)

                                                                                       cGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAc  <  2:6445022/93‑1 (MQ=255)

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAC  >  NC_000913/2296033‑2296212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGC                                                                                               >  SRR4302540.5970903/1‑94 (MQ=60)

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGC                                                                                               <  SRR4302540.3128304/94‑1 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGCACTCTTCGGCAT                                                                                             >  SRR4302540.5903774/1‑94 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAT                                                                                             <  SRR4302540.4837952/94‑1 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAT                                                                                             <  SRR4302540.7891564/94‑1 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAT                                                                                             >  SRR4302540.5903773/1‑94 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302540.6335355/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302540.4912505/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302540.5031165/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302540.6335354/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302540.6335356/94‑1 (MQ=60)

     CCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGG                                                                                          >  SRR4302540.5852845/1‑94 (MQ=60)

     CCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGG                                                                                          <  SRR4302540.4940630/94‑1 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         >  SRR4302540.3022754/1‑94 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         >  SRR4302540.3009285/1‑94 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAACACTCTTCGGCATTGGC                                                                                         >  SRR4302540.7289757/1‑94 (MQ=60)

       GCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCT                                                                                        >  SRR4302540.8366266/1‑94 (MQ=60)

       GCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCT                                                                                        <  SRR4302540.4737774/94‑1 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302540.3975144/1‑94 (MQ=60)

         TACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTT                                                                                      <  SRR4302540.7054500/94‑1 (MQ=60)

         TACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTT                                                                                      >  SRR4302540.2106501/1‑94 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    <  SRR4302540.3859317/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    <  SRR4302540.2352717/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    <  SRR4302540.2352718/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    >  SRR4302540.7223668/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAGTCCATGTATTACTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAATTCTTCGGCATTGGCTTTTTC                                                                                   <  SRR4302540.7001205/94‑1 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   <  SRR4302540.7558725/94‑1 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   >  SRR4302540.3126492/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   <  SRR4302540.8548727/94‑1 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   >  SRR4302540.5551951/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   >  SRR4302540.7461603/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGATTTTTC                                                                                   >  SRR4302540.1389027/1‑94 (MQ=60)

             GTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCC                                                                                  <  SRR4302540.5400180/94‑1 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                >  SRR4302540.629057/1‑94 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                <  SRR4302540.5765171/94‑1 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                <  SRR4302540.8766742/94‑1 (MQ=60)

                 TTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCC                                                                              <  SRR4302540.6961492/94‑1 (MQ=60)

                  TGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAGCTCTTGGGCATTGGCTTTTTtctgtcg                                                                             >  SRR4302540.5259217/1‑87 (MQ=60)

                  TGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCC                                                                             <  SRR4302540.8518811/94‑1 (MQ=60)

                    TAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGG                                                                           <  SRR4302540.3763596/94‑1 (MQ=60)

                    TAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGG                                                                           <  SRR4302540.6720113/94‑1 (MQ=60)

                     AGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGT                                                                          <  SRR4302540.5562630/94‑1 (MQ=60)

                     AGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGT                                                                          <  SRR4302540.9783514/94‑1 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         <  SRR4302540.960267/94‑1 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         >  SRR4302540.286650/1‑94 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         <  SRR4302540.8279832/94‑1 (MQ=60)

                        GCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTT                                                                       <  SRR4302540.3409823/94‑1 (MQ=60)

                         CACGGAATCCATGTATTCCTGATCCACCGTGTTGCGCCTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTA                                                                      <  SRR4302540.434810/94‑1 (MQ=60)

                         CACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTA                                                                      >  SRR4302540.601927/1‑94 (MQ=60)

                             GAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGC                                                                  >  SRR4302540.7838749/1‑94 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 >  SRR4302540.9397575/1‑94 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 >  SRR4302540.1833458/1‑94 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 <  SRR4302540.1676906/94‑1 (MQ=60)

                               ATCTATGTATTCCTGATACACTGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCA                                                                <  SRR4302540.9205872/94‑1 (MQ=60)

                               ATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCA                                                                <  SRR4302540.5937013/94‑1 (MQ=60)

                               ATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCA                                                                >  SRR4302540.65948/1‑94 (MQ=60)

                                TCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAC                                                               <  SRR4302540.4470201/94‑1 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              >  SRR4302540.2519139/1‑94 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              >  SRR4302540.4193219/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302540.8166046/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             <  SRR4302540.5004905/94‑1 (MQ=60)

                                  CATGTAATCCTGATACACCGTGTTGCTCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             <  SRR4302540.7308458/94‑1 (MQ=60)

                                   ATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCC                                                            >  SRR4302540.5149233/1‑94 (MQ=60)

                                    TTTATTCCTGATACACCGTGTTGCTCATTTGGTGGCAGCTAAGGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           <  SRR4302540.2857907/94‑1 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           >  SRR4302540.956350/1‑94 (MQ=60)

                                     GTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAG                                                          >  SRR4302540.6520170/1‑94 (MQ=60)

                                     GTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAG                                                          <  SRR4302540.5887418/94‑1 (MQ=60)

                                      TATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGA                                                         >  SRR4302540.9278373/1‑94 (MQ=60)

                                      TATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGA                                                         >  SRR4302540.8440768/1‑94 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        >  SRR4302540.7820325/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGTTGCGTATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAG                                                       >  SRR4302540.5995396/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAG                                                       >  SRR4302540.4927679/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAG                                                       >  SRR4302540.5995397/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGATGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAG                                                       >  SRR4302540.8268751/1‑94 (MQ=60)

                                         TCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGA                                                      >  SRR4302540.5833831/1‑94 (MQ=60)

                                          CCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGAC                                                     <  SRR4302540.4896114/94‑1 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302540.795480/1‑94 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302540.5643551/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302540.554699/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302540.2756895/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302540.6674568/94‑1 (MQ=60)

                                              ATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATG                                                 >  SRR4302540.6252495/1‑94 (MQ=60)

                                              ATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATG                                                 >  SRR4302540.6252779/1‑94 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCG                                              <  SRR4302540.7590427/94‑1 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCG                                              >  SRR4302540.5605314/1‑94 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCAG                                              >  SRR4302540.5176345/1‑94 (MQ=60)

                                                   CCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCC                                            >  SRR4302540.9499280/1‑94 (MQ=60)

                                                   CCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCC                                            >  SRR4302540.6149308/1‑94 (MQ=60)

                                                    CGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCA                                           <  SRR4302540.2378011/94‑1 (MQ=60)

                                                     GTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAA                                          >  SRR4302540.5217617/1‑94 (MQ=60)

                                                     GTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAA                                          <  SRR4302540.3988586/94‑1 (MQ=60)

                                                       GTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACA                                        >  SRR4302540.1529171/1‑94 (MQ=60)

                                                       GTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACA                                        >  SRR4302540.8069403/1‑94 (MQ=60)

                                                         TGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAA                                      >  SRR4302540.5161390/1‑94 (MQ=60)

                                                          tctCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAA                                     <  SRR4302540.8746666/91‑1 (MQ=60)

                                                          GCGCATTTCGTGGCAGCTAATGCAGAACTTTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAA                                     <  SRR4302540.8746667/94‑1 (MQ=60)

                                                           CGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAC                                    >  SRR4302540.3764836/1‑94 (MQ=60)

                                                           CGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAC                                    <  SRR4302540.1720222/94‑1 (MQ=60)

                                                           CGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAC                                    >  SRR4302540.937169/1‑94 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   >  SRR4302540.7529318/1‑94 (MQ=60)

                                                             CATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCG                                  <  SRR4302540.9941822/94‑1 (MQ=60)

                                                               TTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGAT                                <  SRR4302540.9760750/94‑1 (MQ=60)

                                                                  CGTGGCAGCTAATGCAGAACTCTTCTGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAA                             <  SRR4302540.510154/94‑1 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            >  SRR4302540.4228202/1‑94 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            >  SRR4302540.8090667/1‑94 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTTCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.4045599/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.2595611/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.9634189/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.4695655/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.319372/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.319373/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.4045600/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302540.6271197/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302540.10052537/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302540.1421519/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302540.2339483/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          >  SRR4302540.3267641/1‑94 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          >  SRR4302540.5479900/1‑94 (MQ=60)

                                                                       CAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCA                        <  SRR4302540.9343273/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       >  SRR4302540.2075982/1‑94 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       >  SRR4302540.6995817/1‑94 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302540.3205949/94‑1 (MQ=60)

                                                                         GCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGC                      >  SRR4302540.10037590/1‑94 (MQ=60)

                                                                         GCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGC                      <  SRR4302540.2506323/94‑1 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     >  SRR4302540.8207329/1‑94 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     >  SRR4302540.4245962/1‑94 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     <  SRR4302540.1429189/94‑1 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     <  SRR4302540.9280439/94‑1 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGT                    <  SRR4302540.4625093/94‑1 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCACAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGC                    >  SRR4302540.9275660/1‑94 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  >  SRR4302540.4550112/1‑94 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  <  SRR4302540.3622856/94‑1 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  >  SRR4302540.3551660/1‑94 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  <  SRR4302540.1839671/94‑1 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACACCAGCGTCC                  >  SRR4302540.1131782/1‑94 (MQ=60)

                                                                              TGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCC                 >  SRR4302540.9670119/1‑94 (MQ=60)

                                                                                 AGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAG              >  SRR4302540.9588837/1‑94 (MQ=60)

                                                                                  GAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACGGCAGCGTCCCCAGC             <  SRR4302540.6088902/94‑1 (MQ=60)

                                                                                   AACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCG            <  SRR4302540.7401316/94‑1 (MQ=60)

                                                                                     CTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCC          >  SRR4302540.7584128/1‑94 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         <  SRR4302540.5636550/94‑1 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         <  SRR4302540.413099/94‑1 (MQ=60)

                                                                                       CTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAG        >  SRR4302540.5785120/1‑94 (MQ=60)

                                                                                       CTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAG        >  SRR4302540.7959106/1‑94 (MQ=60)

                                                                                        TTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGA       >  SRR4302540.704629/1‑94 (MQ=60)

                                                                                         TCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAC      <  SRR4302540.230135/94‑1 (MQ=60)

                                                                                          CGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAG‑CGG    >  SRR4302540.3048598/1‑94 (MQ=60)

                                                                                           GGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGG    >  SRR4302540.9108673/1‑94 (MQ=60)

                                                                                           GGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGG    >  SRR4302540.9770466/1‑94 (MQ=60)

                                                                                           GGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGG    <  SRR4302540.9590217/94‑1 (MQ=60)

                                                                                            GCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGC   >  SRR4302540.860248/1‑94 (MQ=60)

                                                                                            GCATTGGCTTTTTCCACCCCGGTGTTAAAGCCACCCCAAAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGC   <  SRR4302540.6371632/94‑1 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCTATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  SRR4302540.10105949/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  SRR4302540.9465206/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  SRR4302540.4698823/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  <  SRR4302540.1007403/94‑1 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  <  SRR4302540.5790982/94‑1 (MQ=60)

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`