Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,297,335 A→G G88G (GGT→GGC)  napH ← ferredoxin‑type protein: electron transfer

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,297,3350AG100.0% 612.7 / NA 192G88G (GGT→GGC) napHferredoxin‑type protein: electron transfer
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (87/105);  total (87/105)

Only 100 of 214 total aligned reads displayed.

CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297245‑2297424
                                                                                          |                                                                                         
   tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      >  2:1149922/1‑93 (MQ=255)
   tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      >  1:3952640/1‑93 (MQ=255)
   tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      >  2:7666705/1‑93 (MQ=255)
    aaGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTc                                                                                     <  1:3930377/93‑1 (MQ=255)
     aGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCa                                                                                    >  2:647457/1‑93 (MQ=255)
        cGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACg                                                                                 >  1:5792299/1‑93 (MQ=255)
          gTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGcc                                                                               >  1:1787125/1‑93 (MQ=255)
             aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc                                                                            >  1:1020612/1‑93 (MQ=255)
               cGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGt                                                                          <  1:6220931/93‑1 (MQ=255)
               cGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGt                                                                          <  2:3596789/93‑1 (MQ=255)
                gggTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTg                                                                         >  2:632077/1‑93 (MQ=255)
                gggTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGGCAACGCCACCGTg                                                                         >  2:6443488/1‑93 (MQ=255)
                gggTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATAACCGCGCCGGTCAACGCCACCGTg                                                                         >  2:3832032/1‑93 (MQ=255)
                  gTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggc                                                                       >  1:7802013/1‑93 (MQ=255)
                  gTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggc                                                                       >  1:1420584/1‑93 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      >  2:559848/1‑93 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      <  2:1935160/93‑1 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      <  2:9017645/93‑1 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      <  2:10032741/93‑1 (MQ=255)
                    tCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcag                                                                     <  2:9449323/93‑1 (MQ=255)
                       gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca                                                                  >  1:248087/1‑93 (MQ=255)
                       gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca                                                                  >  1:8965071/1‑93 (MQ=255)
                         gggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGa                                                                <  2:1793478/93‑1 (MQ=255)
                         gggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGa                                                                <  1:411260/93‑1 (MQ=255)
                          ggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAt                                                               <  2:6131022/93‑1 (MQ=255)
                          gacAGGCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAt                                                               <  1:8862060/91‑1 (MQ=255)
                           gCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATg                                                              <  2:4373388/93‑1 (MQ=255)
                             aGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAc                                                            >  2:8395756/1‑93 (MQ=255)
                             aGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGAACGGTGATAATCACCGCGCCGGTCAACGCCCCCGTGGCAGGCAGATGAc                                                            >  2:9845345/1‑93 (MQ=255)
                              gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc                                                           <  2:6223087/93‑1 (MQ=255)
                              gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc                                                           >  1:3323739/1‑93 (MQ=255)
                              gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc                                                           >  1:79877/1‑93 (MQ=255)
                              gACCCAGCTGCAAAATAATAGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCCGATGAcc                                                           >  1:6490614/1‑93 (MQ=255)
                               aCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCa                                                          <  1:106052/93‑1 (MQ=255)
                                cccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAc                                                         <  1:1848561/93‑1 (MQ=255)
                                cccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAc                                                         >  1:3866725/1‑93 (MQ=255)
                                 ccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACt                                                        <  2:9541969/93‑1 (MQ=255)
                                 ccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACt                                                        <  1:4511127/93‑1 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       <  2:8414472/93‑1 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       >  2:3441498/1‑93 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       <  2:1353140/93‑1 (MQ=255)
                                   aGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTgg                                                      >  1:3608163/1‑93 (MQ=255)
                                   aGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTgg                                                      >  2:1514323/1‑93 (MQ=255)
                                      tGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCaa                                                   <  2:8900454/93‑1 (MQ=255)
                                        cAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGa                                                 <  2:7370994/93‑1 (MQ=255)
                                        cAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGa                                                 <  1:3733863/93‑1 (MQ=255)
                                         aaaaTAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGat                                                >  1:5001126/1‑92 (MQ=255)
                                          aaaTAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACt                                               >  2:3023324/1‑93 (MQ=255)
                                           aaaaatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCCCCGGTCAACGCCACCGTGGCAGGCAGGTGACCACTGGTAAGACtt                                              >  2:3234789/4‑93 (MQ=255)
                                            ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt                                             >  1:6616271/1‑93 (MQ=255)
                                            ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt                                             >  2:9226120/1‑93 (MQ=255)
                                              actCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           <  1:7281363/91‑1 (MQ=255)
                                              aatCGCTTTCCCGCCAGGGCGTAGATCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           <  2:4796183/93‑1 (MQ=255)
                                              aatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           >  1:4929624/1‑93 (MQ=255)
                                                tCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAg                                         <  2:601644/93‑1 (MQ=255)
                                                tCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAg                                         <  1:307061/93‑1 (MQ=255)
                                                  gCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCg                                       >  2:7960726/1‑93 (MQ=255)
                                                   cTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGt                                      >  1:1522280/1‑93 (MQ=255)
                                                     ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCTGCGtca                                    >  2:2956682/1‑93 (MQ=255)
                                                     ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    >  2:6597642/1‑93 (MQ=255)
                                                     ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    <  1:2419544/93‑1 (MQ=255)
                                                     ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca                                    <  2:3253726/93‑1 (MQ=255)
                                                      tCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcat                                   <  2:810715/93‑1 (MQ=255)
                                                       cccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatc                                  <  1:3025685/93‑1 (MQ=255)
                                                       cccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatc                                  <  1:9194826/93‑1 (MQ=255)
                                                        ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca                                 >  1:9938920/1‑93 (MQ=255)
                                                         cGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAg                                >  1:2983016/1‑93 (MQ=255)
                                                           ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg                              >  1:5201600/1‑93 (MQ=255)
                                                            cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg                             >  2:3967323/1‑93 (MQ=255)
                                                            cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg                             >  1:812332/1‑93 (MQ=255)
                                                             aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa                            >  2:4198249/1‑93 (MQ=255)
                                                              gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           >  2:569576/1‑93 (MQ=255)
                                                               ggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATc                          <  1:4746058/93‑1 (MQ=255)
                                                                  gTATAGCACTGTGATAATCACCGCGCCGGTCAACGCCCCCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       <  2:7176296/93‑1 (MQ=255)
                                                                  gTAGAGCACGGTGATAATCACCGCGCCGGTCACCGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       >  2:9623634/1‑93 (MQ=255)
                                                                  gTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       >  2:2227412/1‑93 (MQ=255)
                                                                  gTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       <  1:2339261/93‑1 (MQ=255)
                                                                   tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCgggc                      >  2:9313281/1‑91 (MQ=255)
                                                                    agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa                     <  2:1629916/93‑1 (MQ=255)
                                                                    agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa                     >  2:8504877/1‑93 (MQ=255)
                                                                     gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg                    <  1:956594/93‑1 (MQ=255)
                                                                     gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg                    <  1:7012351/93‑1 (MQ=255)
                                                                      agCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGc                   <  1:8787286/93‑1 (MQ=255)
                                                                       gCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCg                  >  2:7398361/1‑93 (MQ=255)
                                                                        cACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCgg                 <  1:8349887/93‑1 (MQ=255)
                                                                         aCGGTTATAATCACCGCGCCGGTCAACGCCACCGTGGCATGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa                <  1:732364/93‑1 (MQ=255)
                                                                          cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa               <  1:1577675/93‑1 (MQ=255)
                                                                          cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa               <  1:909996/93‑1 (MQ=255)
                                                                          cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa               >  2:3358203/1‑93 (MQ=255)
                                                                          cGGGGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa               <  2:8304164/93‑1 (MQ=255)
                                                                           ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAc              <  1:2684250/93‑1 (MQ=255)
                                                                           ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAc              >  2:4551942/1‑93 (MQ=255)
                                                                           ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAc              <  1:8417194/93‑1 (MQ=255)
                                                                            gTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACg             <  2:390428/93‑1 (MQ=255)
                                                                             tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg            >  1:5660413/1‑93 (MQ=255)
                                                                              gATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACggg           >  1:7498100/1‑92 (MQ=255)
                                                                                tAATCCCCTCGCCGGTCAACGCTCCCGTGGCAGGCAGATGACCACTGGCAAAACTTTGCAGCGTCATCAGCGGATCGGTCAGCAGAACGgtgt         <  2:8691838/93‑1 (MQ=255)
                                                                                    caccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa     <  1:1962649/93‑1 (MQ=255)
                                                                                     accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  1:628863/93‑1 (MQ=255)
                                                                                      ccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATa   >  1:8299883/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297245‑2297424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  NC_000913/2297242‑2297428
                                                                                             |                                                                                             
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCG                                                                                               <  SRR4302540.9353472/94‑1 (MQ=60)
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCG                                                                                               >  SRR4302540.6627164/1‑94 (MQ=60)
   cgctaactcgggatgcggggtgagcaggaAGACCCAGGTGCAAAATAATGGCTTTCCCGCCAGGGCGTAGAGCGCGGTGATAATCCCCGCACCG                                                                                            <  SRR4302540.6844468/65‑1 (MQ=60)
   CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                            <  SRR4302540.6637148/94‑1 (MQ=60)
   CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                            >  SRR4302540.6313500/1‑94 (MQ=60)
    GCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGG                                                                                           >  SRR4302540.6006605/1‑94 (MQ=60)
     CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGT                                                                                          >  SRR4302540.3995293/1‑94 (MQ=60)
       AAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCA                                                                                        <  SRR4302540.3972875/94‑1 (MQ=60)
        AGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAA                                                                                       <  SRR4302540.3913488/94‑1 (MQ=60)
        AGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAA                                                                                       >  SRR4302540.10080975/1‑94 (MQ=60)
          TCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACG                                                                                     >  SRR4302540.5856297/1‑94 (MQ=60)
            GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                   >  SRR4302540.1806540/1‑94 (MQ=60)
            GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                   >  SRR4302540.7091149/1‑94 (MQ=60)
               AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC                                                                                <  SRR4302540.9115976/94‑1 (MQ=60)
               AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC                                                                                >  SRR4302540.1030967/1‑94 (MQ=60)
                 TCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGT                                                                              <  SRR4302540.9212893/94‑1 (MQ=60)
                  CGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTG                                                                             <  SRR4302540.6290131/94‑1 (MQ=60)
                    GGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGC                                                                           >  SRR4302540.1435947/1‑94 (MQ=60)
                    GGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGC                                                                           >  SRR4302540.7893197/1‑94 (MQ=60)
                     GTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCA                                                                          >  SRR4302540.2929206/1‑94 (MQ=60)
                      TTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAG                                                                         >  SRR4302540.7476589/1‑94 (MQ=60)
                         AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA                                                                      >  SRR4302540.250488/1‑94 (MQ=60)
                         AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA                                                                      >  SRR4302540.2504346/1‑94 (MQ=60)
                         AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA                                                                      >  SRR4302540.9071286/1‑94 (MQ=60)
                          GCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAG                                                                     <  SRR4302540.154232/94‑1 (MQ=60)
                            GGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAT                                                                   <  SRR4302540.415574/94‑1 (MQ=60)
                             GGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATG                                                                  >  SRR4302540.2608810/1‑94 (MQ=60)
                             GGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATG                                                                  >  SRR4302540.3065421/1‑94 (MQ=60)
                             GACAGGCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATG                                                                  <  SRR4302540.8964609/94‑1 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                               >  SRR4302540.80714/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                               >  SRR4302540.623568/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                               >  SRR4302540.3360201/1‑94 (MQ=60)
                                AGACCCAGCTGCAAAATAATAGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCCGATGACC                                                               >  SRR4302540.6562796/1‑94 (MQ=60)
                                 GACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCA                                                              >  SRR4302540.8693089/1‑94 (MQ=60)
                                  ACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                             <  SRR4302540.200755/94‑1 (MQ=60)
                                  ACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                             <  SRR4302540.107185/94‑1 (MQ=60)
                                  ACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                             >  SRR4302540.3908756/1‑94 (MQ=60)
                                   CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT                                                            <  SRR4302540.1868839/94‑1 (MQ=60)
                                    CCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTG                                                           <  SRR4302540.4560005/94‑1 (MQ=60)
                                     CAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGG                                                          <  SRR4302540.5281487/94‑1 (MQ=60)
                                     CAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGG                                                          >  SRR4302540.3647591/1‑94 (MQ=60)
                                      AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC                                                         >  SRR4302540.8505853/1‑94 (MQ=60)
                                       GCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCA                                                        >  SRR4302540.6510890/1‑94 (MQ=60)
                                           CAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAT                                                    >  SRR4302540.5055282/1‑94 (MQ=60)
                                           CAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAC                                                    <  SRR4302540.3774599/94‑1 (MQ=60)
                                           CAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAC                                                    >  SRR4302540.5055284/1‑94 (MQ=60)
                                            AAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACT                                                   <  SRR4302540.3652132/94‑1 (MQ=60)
                                            AAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACT                                                   <  SRR4302540.8312652/94‑1 (MQ=60)
                                              AATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTT                                                 >  SRR4302540.6689545/1‑94 (MQ=60)
                                               ATAATCCCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG                                                <  SRR4302540.7776464/94‑1 (MQ=60)
                                                TAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                               >  SRR4302540.4982758/1‑94 (MQ=60)
                                                 ACTCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA                                              <  SRR4302540.7362610/94‑1 (MQ=60)
                                                 AATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA                                              <  SRR4302540.4112765/94‑1 (MQ=60)
                                                 AATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA                                              >  SRR4302540.3808080/1‑94 (MQ=60)
                                                  ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG                                             >  SRR4302540.1007736/1‑94 (MQ=60)
                                                   TCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGC                                            <  SRR4302540.310111/94‑1 (MQ=60)
                                                    CGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCG                                           >  SRR4302540.9700513/1‑94 (MQ=60)
                                                     GCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGT                                          >  SRR4302540.1539127/1‑94 (MQ=60)
                                                     GCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGT                                          >  SRR4302540.1539126/1‑94 (MQ=60)
                                                        TTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCAT                                       <  SRR4302540.2445622/94‑1 (MQ=60)
                                                        TTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCAT                                       <  SRR4302540.1064746/94‑1 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAGCGTGGCAGGCAagtggccacgcgcaagacatggcaccgtcgtcc                                     >  SRR4302540.8942696/1‑61 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     >  SRR4302540.10054958/1‑94 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     <  SRR4302540.9305115/94‑1 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     <  SRR4302540.3058919/94‑1 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     <  SRR4302540.2039170/94‑1 (MQ=60)
                                                          CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     >  SRR4302540.8942695/1‑94 (MQ=60)
                                                           CCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAG                                    >  SRR4302540.3015940/1‑94 (MQ=60)
                                                           CCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAG                                    <  SRR4302540.3401/94‑1 (MQ=60)
                                                             GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG                                  >  SRR4302540.5258244/1‑94 (MQ=60)
                                                              CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                 >  SRR4302540.1872370/1‑94 (MQ=60)
                                                              CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                 >  SRR4302540.820958/1‑94 (MQ=60)
                                                               CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGA                                <  SRR4302540.5028717/94‑1 (MQ=60)
                                                                AGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAT                               <  SRR4302540.5807539/94‑1 (MQ=60)
                                                                AGGGCGTAGAGCACGGTAATAATCCCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAT                               <  SRR4302540.9066900/94‑1 (MQ=60)
                                                                  GGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCG                             <  SRR4302540.4796705/94‑1 (MQ=60)
                                                                     GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTC                          <  SRR4302540.2364467/94‑1 (MQ=60)
                                                                     GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTC                          <  SRR4302540.6782735/94‑1 (MQ=60)
                                                                       AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG                        <  SRR4302540.4898836/94‑1 (MQ=60)
                                                                       AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG                        >  SRR4302540.4791471/1‑94 (MQ=60)
                                                                        GAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGC                       >  SRR4302540.1812190/1‑94 (MQ=60)
                                                                        GAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGC                       <  SRR4302540.966508/94‑1 (MQ=60)
                                                                        GAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGC                       <  SRR4302540.7090200/94‑1 (MQ=60)
                                                                         AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                      <  SRR4302540.4232758/94‑1 (MQ=60)
                                                                         AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                      <  SRR4302540.8104983/94‑1 (MQ=60)
                                                                         AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                      <  SRR4302540.8888972/94‑1 (MQ=60)
                                                                           CACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGA                    <  SRR4302540.8446799/94‑1 (MQ=60)
                                                                            ACGGTTATAATCACCGCGCCGGTCAACGCCACCGTGGCATGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAA                   <  SRR4302540.740196/94‑1 (MQ=60)
                                                                            ACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAA                   <  SRR4302540.740195/94‑1 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                  <  SRR4302540.2442760/94‑1 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                  <  SRR4302540.9478364/94‑1 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                  <  SRR4302540.919637/94‑1 (MQ=60)
                                                                             CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                  <  SRR4302540.1594930/94‑1 (MQ=60)
                                                                              GGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACG                 <  SRR4302540.2713272/94‑1 (MQ=60)
                                                                              GGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACG                 <  SRR4302540.3986767/94‑1 (MQ=60)
                                                                              GGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACG                 <  SRR4302540.8514896/94‑1 (MQ=60)
                                                                               GTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGG                >  SRR4302540.5722738/1‑94 (MQ=60)
                                                                                TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT               >  SRR4302540.8650383/1‑94 (MQ=60)
                                                                                TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGG               >  SRR4302540.7581875/1‑94 (MQ=60)
                                                                                GGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT               <  SRR4302540.3302312/94‑1 (MQ=60)
                                                                                 GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG              <  SRR4302540.3031956/94‑1 (MQ=60)
                                                                                  ATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGT             <  SRR4302540.1674131/94‑1 (MQ=60)
                                                                                   TAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTC            <  SRR4302540.8013/94‑1 (MQ=60)
                                                                                       CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT        <  SRR4302540.1983969/94‑1 (MQ=60)
                                                                                        CCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA       <  SRR4302540.3146046/94‑1 (MQ=60)
                                                                                        CCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA       <  SRR4302540.1077450/94‑1 (MQ=60)
                                                                                        ACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA       >  SRR4302540.8396254/1‑94 (MQ=60)
                                                                                        ACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA       <  SRR4302540.635553/94‑1 (MQ=60)
                                                                                        ACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATA       >  SRR4302540.4265211/1‑94 (MQ=60)
                                                                                         CCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA      <  SRR4302540.7460385/94‑1 (MQ=60)
                                                                                          CGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAAC     <  SRR4302540.8403768/94‑1 (MQ=60)
                                                                                            CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   <  SRR4302540.3096846/94‑1 (MQ=60)
                                                                                            CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   <  SRR4302540.2295086/94‑1 (MQ=60)
                                                                                            CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   <  SRR4302540.6103774/94‑1 (MQ=60)
                                                                                             GCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGCACGGTGTCGAATAACCGG  >  SRR4302540.6260605/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTTCGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  NC_000913/2297242‑2297428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑