Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,297,335 A→G G88G (GGT→GGC)  napH ← ferredoxin‑type protein: electron transfer

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,297,3350AG100.0% 580.1 / NA 183G88G (GGT→GGC) napHferredoxin‑type protein: electron transfer
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (85/98);  total (85/98)

Only 100 of 210 total aligned reads displayed.

CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297245‑2297424
                                                                                          |                                                                                         
cGCTAAGTCGGTAATCGGGTTCAGCGGGCAGCCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATcaccgcgcc                                                                                         <  1:1287798/93‑1 (MQ=255)
   tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt                                                                                      <  1:3036178/93‑1 (MQ=255)
     aGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCa                                                                                    >  1:4018064/1‑93 (MQ=255)
     aGTCGGCAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGCGATAATCACCGCGCCGGTCa                                                                                    >  2:4910279/1‑93 (MQ=255)
      gTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCaa                                                                                   <  1:833317/93‑1 (MQ=255)
      gTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCaa                                                                                   >  2:507242/1‑93 (MQ=255)
       tCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAc                                                                                  <  1:142353/93‑1 (MQ=255)
          gTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGcc                                                                               >  1:2578187/1‑93 (MQ=255)
           tAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCa                                                                              >  1:482817/1‑93 (MQ=255)
           tAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCa                                                                              >  2:2413536/1‑93 (MQ=255)
            aaTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAc                                                                             <  2:1972808/93‑1 (MQ=255)
              tCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCg                                                                           >  1:308660/1‑93 (MQ=255)
              tCGGGGTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTGCCCGCCAGCGCGAAGAGCACGGTGAGAATCACCGCGCCGGTCAACGCCACCg                                                                           <  2:3326718/93‑1 (MQ=255)
               cGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGGGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGt                                                                          <  1:3375944/93‑1 (MQ=255)
                  gTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggc                                                                       <  1:1014922/93‑1 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      >  2:2548467/1‑93 (MQ=255)
                   ttCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggca                                                                      <  1:1561763/93‑1 (MQ=255)
                      aGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggc                                                                   <  1:2676913/93‑1 (MQ=255)
                      aGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggc                                                                   <  2:1990510/93‑1 (MQ=255)
                       gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTgggcggca                                                                  >  2:1920419/1‑93 (MQ=255)
                       gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca                                                                  <  2:3166264/93‑1 (MQ=255)
                         gggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGa                                                                <  2:5971051/93‑1 (MQ=255)
                            cAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGa                                                             <  2:1725139/93‑1 (MQ=255)
                            cAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGa                                                             <  1:3592477/93‑1 (MQ=255)
                                cccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAc                                                         <  2:1548493/93‑1 (MQ=255)
                                cccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAc                                                         <  1:308295/93‑1 (MQ=255)
                                cccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAc                                                         <  2:2833289/93‑1 (MQ=255)
                                 ccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACt                                                        >  1:2035279/1‑93 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       >  2:3785478/1‑93 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       >  2:5742219/1‑93 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg                                                       >  2:5651617/1‑93 (MQ=255)
                                  cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACAACTg                                                       >  1:5582389/1‑93 (MQ=255)
                                   aGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTgg                                                      <  2:5412396/93‑1 (MQ=255)
                                    gCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGc                                                     >  1:1711121/1‑93 (MQ=255)
                                    gCTGCAAAATAATCGCTTTCCCGACAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGc                                                     <  1:5488784/93‑1 (MQ=255)
                                      tGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCaa                                                   >  2:6027928/1‑93 (MQ=255)
                                      tGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCaa                                                   <  1:5135575/93‑1 (MQ=255)
                                        cAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGa                                                 >  2:2207947/1‑93 (MQ=255)
                                           aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt                                              <  1:1116662/93‑1 (MQ=255)
                                           aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt                                              >  1:5742921/1‑93 (MQ=255)
                                           aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt                                              <  1:453447/93‑1 (MQ=255)
                                            ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt                                             <  1:2791163/93‑1 (MQ=255)
                                              aatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           >  1:709659/1‑93 (MQ=255)
                                              aatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc                                           >  1:4967210/1‑93 (MQ=255)
                                               atCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCa                                          >  2:1876861/1‑93 (MQ=255)
                                               atCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCa                                          <  2:4209811/93‑1 (MQ=255)
                                               atCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCa                                          <  1:1307179/93‑1 (MQ=255)
                                                tCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAg                                         >  1:2445793/1‑93 (MQ=255)
                                                  gCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCg                                       >  2:5225235/1‑93 (MQ=255)
                                                    tttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtc                                     >  2:3609372/1‑93 (MQ=255)
                                                      tCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcat                                   <  1:493025/93‑1 (MQ=255)
                                                       cccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatc                                  >  2:4077539/1‑93 (MQ=255)
                                                        ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca                                 <  2:4437272/93‑1 (MQ=255)
                                                        ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca                                 <  2:2792761/93‑1 (MQ=255)
                                                        ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca                                 >  1:3166877/1‑93 (MQ=255)
                                                         cGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAg                                >  2:5507236/1‑93 (MQ=255)
                                                         cGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAg                                >  2:6057735/1‑93 (MQ=255)
                                                          gCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGc                               <  1:4084997/93‑1 (MQ=255)
                                                           ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg                              <  2:2435103/93‑1 (MQ=255)
                                                           ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg                              <  1:4328080/93‑1 (MQ=255)
                                                           ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg                              >  2:258097/1‑93 (MQ=255)
                                                            cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg                             >  1:4710789/1‑93 (MQ=255)
                                                            cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg                             >  2:2929158/1‑93 (MQ=255)
                                                             aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa                            >  1:1884895/1‑93 (MQ=255)
                                                             aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa                            <  2:1150590/93‑1 (MQ=255)
                                                              gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           <  2:1243457/93‑1 (MQ=255)
                                                              gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           >  2:3987656/1‑93 (MQ=255)
                                                              gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt                           <  1:5295450/93‑1 (MQ=255)
                                                               ggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATc                          <  1:3491872/93‑1 (MQ=255)
                                                               ggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATc                          <  2:3511273/93‑1 (MQ=255)
                                                                gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCGGCGGATCg                         <  2:6163475/93‑1 (MQ=255)
                                                                gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCg                         <  2:3130554/93‑1 (MQ=255)
                                                                gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCg                         <  1:5454453/93‑1 (MQ=255)
                                                                gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCg                         <  2:633279/93‑1 (MQ=255)
                                                                 cGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCgg                        <  1:5482086/93‑1 (MQ=255)
                                                                  gTAGAGCACGGTGATAATAACCGCGCCGGGCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGt                       >  1:2355563/1‑93 (MQ=255)
                                                                   tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc                      <  2:3094710/93‑1 (MQ=255)
                                                                   tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc                      >  2:4620708/1‑93 (MQ=255)
                                                                   gagagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc                      <  2:1249674/92‑1 (MQ=255)
                                                                    agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa                     <  2:5231085/93‑1 (MQ=255)
                                                                     gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg                    >  2:2670089/1‑93 (MQ=255)
                                                                      agCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGc                   >  2:4721036/1‑93 (MQ=255)
                                                                      agCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGc                   <  2:1037107/93‑1 (MQ=255)
                                                                      agCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGc                   <  1:1954938/93‑1 (MQ=255)
                                                                         aCGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa                <  1:1247022/93‑1 (MQ=255)
                                                                         aCGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa                >  2:3153482/1‑93 (MQ=255)
                                                                         aCGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa                >  2:1502548/1‑93 (MQ=255)
                                                                          cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa               <  2:68858/93‑1 (MQ=255)
                                                                          cGGTCATAATCACGGCGCCGGTCATCGCCACCGTGGCAGTCAGATGACCACTGGCAAGACTGAGCAGCGTCATCAGCGGATCGGTCAGCGGaa               <  2:750625/93‑1 (MQ=255)
                                                                              gATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgt           <  2:4283378/93‑1 (MQ=255)
                                                                              gATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgt           >  2:3950150/1‑93 (MQ=255)
                                                                                tAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtgt         <  1:6277637/93‑1 (MQ=255)
                                                                                  aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCg       <  1:2871736/93‑1 (MQ=255)
                                                                                  aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCg       <  2:3692914/93‑1 (MQ=255)
                                                                                   tCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGa      <  2:5452131/93‑1 (MQ=255)
                                                                                    caccgcgccgGTCAACTCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa     <  2:4807716/93‑1 (MQ=255)
                                                                                     cccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  2:3846804/92‑1 (MQ=255)
                                                                                     accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaaa    >  1:4610796/1‑92 (MQ=255)
                                                                                     accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt    <  2:1609414/93‑1 (MQ=255)
                                                                                      ccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATa   <  2:811898/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA  >  NC_000913/2297245‑2297424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  NC_000913/2297245‑2297428
                                                                                          |                                                                                             
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGCCCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                            <  SRR4302533.1295544/94‑1 (MQ=60)
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCG                                                                                            <  SRR4302533.66941/94‑1 (MQ=60)
  CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGT                                                                                          >  SRR4302533.1232909/1‑94 (MQ=60)
  CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGT                                                                                          >  SRR4302533.1416921/1‑94 (MQ=60)
   TAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTC                                                                                         <  SRR4302533.3054756/94‑1 (MQ=60)
   TAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTC                                                                                         <  SRR4302533.3547084/94‑1 (MQ=60)
    AAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCA                                                                                        >  SRR4302533.4042527/1‑94 (MQ=60)
      GTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAC                                                                                      <  SRR4302533.838200/94‑1 (MQ=60)
       TCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACG                                                                                     <  SRR4302533.143262/94‑1 (MQ=60)
         GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                   >  SRR4302533.2594053/1‑94 (MQ=60)
         GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC                                                                                   >  SRR4302533.4531253/1‑94 (MQ=60)
          GTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCA                                                                                  >  SRR4302533.485699/1‑94 (MQ=60)
             ATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCG                                                                               >  SRR4302533.310549/1‑94 (MQ=60)
             ATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCG                                                                               >  SRR4302533.4759535/1‑94 (MQ=60)
               CGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGGGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTG                                                                             <  SRR4302533.3396791/94‑1 (MQ=60)
               CGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTG                                                                             >  SRR4302533.3103302/1‑94 (MQ=60)
                  GTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCA                                                                          <  SRR4302533.1020882/94‑1 (MQ=60)
                   TTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAG                                                                         <  SRR4302533.1571166/94‑1 (MQ=60)
                   TTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAG                                                                         >  SRR4302533.316150/1‑94 (MQ=60)
                      AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA                                                                      <  SRR4302533.2693325/94‑1 (MQ=60)
                         GGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAT                                                                   <  SRR4302533.1486164/94‑1 (MQ=60)
                            CAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAC                                                                <  SRR4302533.3614588/94‑1 (MQ=60)
                            CAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAC                                                                >  SRR4302533.2373719/1‑94 (MQ=60)
                             AGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACC                                                               <  SRR4302533.3499502/94‑1 (MQ=60)
                              AACCCAGCTAAAAAAAAATCGCTTGCCCGCGAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCA                                                              <  SRR4302533.3320565/94‑1 (MQ=60)
                               ACCCAGCTGCAAAATAATCGCTTCCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCAC                                                             <  SRR4302533.407146/94‑1 (MQ=60)
                                CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT                                                            <  SRR4302533.310182/94‑1 (MQ=60)
                                CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT                                                            >  SRR4302533.2047831/1‑94 (MQ=60)
                                 CCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTG                                                           >  SRR4302533.717524/1‑94 (MQ=60)
                                 CCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACAACTG                                                           >  SRR4302533.5616118/1‑94 (MQ=60)
                                   AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC                                                         <  SRR4302533.325409/94‑1 (MQ=60)
                                   AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC                                                         >  SRR4302533.1721490/1‑94 (MQ=60)
                                    GCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCA                                                        >  SRR4302533.1300088/1‑94 (MQ=60)
                                    GCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCA                                                        <  SRR4302533.288566/94‑1 (MQ=60)
                                    GCTGCAAAATAATCGCTTTCCCGACAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCA                                                        <  SRR4302533.5521874/94‑1 (MQ=60)
                                     CTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAA                                                       >  SRR4302533.4993263/1‑94 (MQ=60)
                                      TGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAG                                                      <  SRR4302533.5166605/94‑1 (MQ=60)
                                      TGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAG                                                      <  SRR4302533.6048069/94‑1 (MQ=60)
                                       GCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGA                                                     >  SRR4302533.3065459/1‑94 (MQ=60)
                                          AAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTT                                                  >  SRR4302533.5777578/1‑94 (MQ=60)
                                           AATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTT                                                 <  SRR4302533.456158/94‑1 (MQ=60)
                                           AATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTT                                                 <  SRR4302533.1123288/94‑1 (MQ=60)
                                            ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG                                                <  SRR4302533.2808331/94‑1 (MQ=60)
                                            ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG                                                >  SRR4302533.3815210/1‑94 (MQ=60)
                                            ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG                                                >  SRR4302533.1270653/1‑94 (MQ=60)
                                             TAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                               <  SRR4302533.1835735/94‑1 (MQ=60)
                                             TAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                               >  SRR4302533.4997325/1‑94 (MQ=60)
                                             TAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGC                                               >  SRR4302533.713851/1‑94 (MQ=60)
                                              AATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA                                              <  SRR4302533.3049511/94‑1 (MQ=60)
                                               ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG                                             <  SRR4302533.1315029/94‑1 (MQ=60)
                                               ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG                                             >  SRR4302533.2028554/1‑94 (MQ=60)
                                               ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG                                             >  SRR4302533.2460889/1‑94 (MQ=60)
                                                TCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGC                                            >  SRR4302533.5491828/1‑94 (MQ=60)
                                                 CGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCG                                           <  SRR4302533.2598128/94‑1 (MQ=60)
                                                 CGCTTTCCCGCCAGGGCGTAGACAACGGCGATAATAACCGCGCCGGTCAAGGCCACCGTGGCAcgcggaagacccctgaccagacttagcagct                                           >  SRR4302533.1737145/1‑63 (MQ=30)
                                                    TTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCA                                        <  SRR4302533.520530/94‑1 (MQ=60)
                                                      TCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATC                                      <  SRR4302533.495969/94‑1 (MQ=60)
                                                      TCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATC                                      <  SRR4302533.4226709/94‑1 (MQ=60)
                                                       CCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCA                                     >  SRR4302533.3186362/1‑94 (MQ=60)
                                                        CCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAG                                    <  SRR4302533.46470/94‑1 (MQ=60)
                                                         CGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGC                                   >  SRR4302533.160899/1‑94 (MQ=60)
                                                          GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG                                  <  SRR4302533.4109865/94‑1 (MQ=60)
                                                          GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG                                  <  SRR4302533.5437962/94‑1 (MQ=60)
                                                           CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                 >  SRR4302533.4739340/1‑94 (MQ=60)
                                                           CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                 <  SRR4302533.4354152/94‑1 (MQ=60)
                                                           CCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGG                                 <  SRR4302533.2221429/94‑1 (MQ=60)
                                                            CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCCCTGGCAAGACTTTGCAGCGTCATCACCGGA                                >  SRR4302533.6095115/1‑94 (MQ=60)
                                                            CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGA                                >  SRR4302533.1896406/1‑94 (MQ=60)
                                                            CAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGA                                <  SRR4302533.2792040/94‑1 (MQ=60)
                                                              GGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC                              <  SRR4302533.5327166/94‑1 (MQ=60)
                                                              GGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC                              <  SRR4302533.4761566/94‑1 (MQ=60)
                                                               GGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCG                             <  SRR4302533.3513406/94‑1 (MQ=60)
                                                               GGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCG                             <  SRR4302533.5547719/94‑1 (MQ=60)
                                                                GCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGG                            <  SRR4302533.5487311/94‑1 (MQ=60)
                                                                 CGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGT                           <  SRR4302533.5515135/94‑1 (MQ=60)
                                                                 CGTAGAGCACGGTGATAATAACCGCGCCGGGCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGT                           >  SRR4302533.2370130/1‑94 (MQ=60)
                                                                  GTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTC                          >  SRR4302533.1039764/1‑94 (MQ=60)
                                                                      AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                      <  SRR4302533.4940777/94‑1 (MQ=60)
                                                                      AGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCG                      <  SRR4302533.1966849/94‑1 (MQ=60)
                                                                        CACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGA                    <  SRR4302533.3115282/94‑1 (MQ=60)
                                                                         ACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAA                   <  SRR4302533.1254469/94‑1 (MQ=60)
                                                                         ACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAA                   >  SRR4302533.5630228/1‑94 (MQ=60)
                                                                          CGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAC                  >  SRR4302533.1922996/1‑94 (MQ=60)
                                                                           GGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACG                 <  SRR4302533.868012/94‑1 (MQ=60)
                                                                            GTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGG                >  SRR4302533.2024876/1‑94 (MQ=60)
                                                                              GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG              <  SRR4302533.2466982/94‑1 (MQ=60)
                                                                                TAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTC            <  SRR4302533.5519322/94‑1 (MQ=60)
                                                                                TAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTC            <  SRR4302533.6315118/94‑1 (MQ=60)
                                                                                  ATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGA          <  SRR4302533.2889406/94‑1 (MQ=60)
                                                                                    CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT        <  SRR4302533.510254/94‑1 (MQ=60)
                                                                                    CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAA        >  SRR4302533.4638728/1‑94 (MQ=60)
                                                                                       CGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAAC     <  SRR4302533.4619533/94‑1 (MQ=60)
                                                                                         CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   <  SRR4302533.449904/94‑1 (MQ=60)
                                                                                         CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   >  SRR4302533.3629698/1‑94 (MQ=60)
                                                                                         CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   >  SRR4302533.4722160/1‑94 (MQ=60)
                                                                                         CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG   <  SRR4302533.4998848/94‑1 (MQ=60)
                                                                                          GCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  SRR4302533.5603404/1‑94 (MQ=60)
                                                                                          GCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  <  SRR4302533.2028843/94‑1 (MQ=60)
                                                                                          GCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  SRR4302533.5086233/1‑94 (MQ=60)
                                                                                          |                                                                                             
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGG  >  NC_000913/2297245‑2297428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑