Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,296,123	T→C	T53A (ACC→GCC)	napC ←	cytochrome c‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,296,123	0	T	C	99.5%	675.8 / NA	209	T53A (ACC→GCC)	napC	cytochrome c‑type protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (120/88); minor base A (1/0); total (121/88)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 216 total aligned reads displayed.

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGA  >  NC_000913/2296033‑2296211

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                        <  2:5324696/93‑1 (MQ=255)

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                        <  1:3058234/93‑1 (MQ=255)

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                        >  2:1680312/1‑93 (MQ=255)

 gccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAtt                                                                                       <  1:1766509/93‑1 (MQ=255)

 gccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAtt                                                                                       >  2:1547287/1‑93 (MQ=255)

   cgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTTCTGATACACCGTGATGCTCATTTTGTTGCAGCTAATGCTTAACTCTTCGGCATTgg                                                                                     >  2:2340320/1‑93 (MQ=255)

    gcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGc                                                                                    >  1:192792/1‑93 (MQ=255)

     cTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCt                                                                                   >  2:5806952/1‑93 (MQ=255)

     cTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCt                                                                                   <  1:936144/93‑1 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                  >  2:5075887/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                  >  2:2408552/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                  >  2:1950708/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                  <  1:1012773/93‑1 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAAATCTTCGGCATTGGCtt                                                                                  >  2:2195501/1‑93 (MQ=255)

       aCGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttt                                                                                 >  2:6058058/1‑93 (MQ=255)

         ggTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttttt                                                                               >  1:3882075/1‑93 (MQ=255)

         ggTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttttt                                                                               >  1:3346853/1‑93 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTc                                                                              >  1:1286175/1‑93 (MQ=255)

           ttgttgTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTcc                                                                             <  1:438850/93‑1 (MQ=255)

            tattgtAGTGCACGGAATCCATGTATTCCTCATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTATTCGGCATTGGCTTTTTCCa                                                                            <  2:6161863/91‑1 (MQ=255)

             gttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAt                                                                           >  1:5339367/1‑93 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                          <  1:543657/93‑1 (MQ=255)

               tgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATcc                                                                         >  1:4872552/1‑93 (MQ=255)

                gtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATccc                                                                        <  1:5243327/93‑1 (MQ=255)

                gtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATccc                                                                        >  2:4913129/1‑93 (MQ=255)

                 tAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCg                                                                       <  2:1877011/93‑1 (MQ=255)

                 tAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCg                                                                       <  1:4745814/93‑1 (MQ=255)

                   gTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgt                                                                     <  2:5174044/93‑1 (MQ=255)

                   gTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgt                                                                     <  1:2976792/93‑1 (MQ=255)

                      cACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGtt                                                                  >  1:2053613/1‑93 (MQ=255)

                       aCGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTa                                                                 >  1:1997937/1‑93 (MQ=255)

                         ggAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaaa                                                               >  1:2721964/1‑93 (MQ=255)

                         ggAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaaa                                                               <  2:2562028/93‑1 (MQ=255)

                         ggAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaaa                                                               >  2:5529792/1‑93 (MQ=255)

                         ggAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaaa                                                               <  2:3906756/93‑1 (MQ=255)

                          gAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAg                                                              <  1:6190319/93‑1 (MQ=255)

                            aTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGcc                                                            >  1:4096167/1‑93 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                           <  2:2113011/93‑1 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                           >  1:2234633/1‑93 (MQ=255)

                              ccATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAc                                                          <  1:285016/93‑1 (MQ=255)

                              ccATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAc                                                          >  2:1757433/1‑93 (MQ=255)

                              ccATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGAATTGGCTTTTTCATTCCCGGGGTTAAAGCCAc                                                          >  1:2361025/1‑93 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcc                                                         >  1:5901043/1‑93 (MQ=255)

                                aTGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAccc                                                        >  1:4146928/1‑93 (MQ=255)

                                 tGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcccc                                                       >  1:5523507/1‑93 (MQ=255)

                                 tGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcccc                                                       <  1:5812049/93‑1 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                   >  1:348280/1‑93 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                   <  1:215023/93‑1 (MQ=255)

                                     ttCCTGAGACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                   >  2:5101550/1‑93 (MQ=255)

                                         tGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACg                                               <  2:5872669/93‑1 (MQ=255)

                                          gATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGa                                              >  1:3234267/1‑93 (MQ=255)

                                            tACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATg                                            <  1:3184398/93‑1 (MQ=255)

                                            tACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATg                                            <  1:3138755/93‑1 (MQ=255)

                                              cacCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgcc                                          >  2:3654180/1‑93 (MQ=255)

                                              cacCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgcc                                          <  2:4206646/93‑1 (MQ=255)

                                                ccGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgc                                        >  2:3916245/1‑93 (MQ=255)

                                                  gtgtTGCGCATTTCGTGGCAGCTAATGCAGAACTGTTCGGCATTTGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGCACACGATGCCGCca                                      >  2:4735362/1‑93 (MQ=255)

                                                  gtgtTGCGCAATGCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCca                                      <  2:4771055/93‑1 (MQ=255)

                                                   tgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaa                                     >  1:1067640/1‑93 (MQ=255)

                                                   tgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaa                                     >  1:5067424/1‑93 (MQ=255)

                                                     ttGCGCATTTCGTGGGAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCTGTGTTATAGCCACCCCAGAAGACGATGCCGCcaaca                                   >  1:5923322/1‑93 (MQ=255)

                                                       gcgcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACaaa                                 >  2:5603312/1‑93 (MQ=255)

                                                       gcgcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACaaa                                 >  2:1583463/1‑93 (MQ=255)

                                                       gcgcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACaaa                                 <  1:4780864/93‑1 (MQ=255)

                                                       gcgcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACaaa                                 >  2:304370/1‑93 (MQ=255)

                                                         gcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAc                               >  2:1986933/1‑93 (MQ=255)

                                                          cATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAcc                              >  1:1488085/1‑93 (MQ=255)

                                                          cATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAcc                              >  2:4110207/1‑93 (MQ=255)

                                                           gtttCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                             >  2:3840468/2‑93 (MQ=255)

                                                           aTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                             >  1:2643208/1‑93 (MQ=255)

                                                           aTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                             >  2:4338364/1‑93 (MQ=255)

                                                                gTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCaa                        <  2:5752836/93‑1 (MQ=255)

                                                                gTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCaa                        >  1:4536754/1‑93 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                       >  2:6087821/1‑93 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                       <  2:3608011/93‑1 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                       >  1:6230241/1‑93 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCCGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                       >  2:1217265/1‑93 (MQ=255)

                                                                  ggCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAca                      <  1:3888804/93‑1 (MQ=255)

                                                                   gCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcag                     <  1:4422281/93‑1 (MQ=255)

                                                                    cAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagc                    <  2:2643181/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                   <  1:2121388/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                   >  2:4634156/1‑93 (MQ=255)

                                                                      gCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagcag                  >  2:2944695/1‑93 (MQ=255)

                                                                      gCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagcag                  >  2:5967531/1‑93 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                <  2:3547965/93‑1 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                >  2:5669520/1‑93 (MQ=255)

                                                                         aaTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGt               >  2:213745/1‑93 (MQ=255)

                                                                         aaTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGt               >  1:3677512/1‑93 (MQ=255)

                                                                           tGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTcc             <  2:852135/93‑1 (MQ=255)

                                                                            gCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTccc            >  1:2807380/1‑93 (MQ=255)

                                                                            gCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTccc            <  1:3296779/93‑1 (MQ=255)

                                                                            gCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTccc            <  2:5779524/93‑1 (MQ=255)

                                                                             cAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTcccc           <  2:2779171/93‑1 (MQ=255)

                                                                              aGAACTCTTCGGCATTTGCTTTTTCCATCCCGGAGTTCAAGCCACCCCAGAAGACGATGCCGCCAACAAAATCGAACAACAGCAGAGTCCCCa          >  1:2442973/1‑93 (MQ=255)

                                                                              aGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCa          <  2:5454382/93‑1 (MQ=255)

                                                                              aGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCa          <  2:6076058/93‑1 (MQ=255)

                                                                                aaCTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAgc        <  1:5162857/93‑1 (MQ=255)

                                                                                    ctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCa    >  1:3772411/1‑93 (MQ=255)

                                                                                    ctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCa    <  1:3825016/93‑1 (MQ=255)

                                                                                    ctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCa    <  1:5751299/93‑1 (MQ=255)

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGA  >  NC_000913/2296033‑2296211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGC                                                                                               <  SRR4302533.1700458/94‑1 (MQ=60)

   CGCCTCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302533.5801559/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            <  SRR4302533.3077000/94‑1 (MQ=60)

    GCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTG                                                                                           <  SRR4302533.2494689/94‑1 (MQ=60)

    GCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTG                                                                                           <  SRR4302533.1777263/94‑1 (MQ=60)

     CCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGG                                                                                          <  SRR4302533.2447217/94‑1 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         >  SRR4302533.194008/1‑94 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         <  SRR4302533.4823511/94‑1 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       <  SRR4302533.941642/94‑1 (MQ=60)

         TACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTT                                                                                      <  SRR4302533.1018701/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    >  SRR4302533.3367533/1‑94 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    >  SRR4302533.3905765/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   >  SRR4302533.3485122/1‑94 (MQ=60)

            GGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   >  SRR4302533.1293914/1‑94 (MQ=60)

              TTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCA                                                                                 <  SRR4302533.441467/94‑1 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                >  SRR4302533.5371385/1‑94 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                >  SRR4302533.5564131/1‑94 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                <  SRR4302533.491540/94‑1 (MQ=60)

                 TTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCC                                                                              >  SRR4302533.4902075/1‑94 (MQ=60)

                 TTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCC                                                                              <  SRR4302533.546885/94‑1 (MQ=60)

                   GTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCG                                                                            <  SRR4302533.5274843/94‑1 (MQ=60)

                    TAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGG                                                                           <  SRR4302533.4774587/94‑1 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         <  SRR4302533.2995005/94‑1 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         <  SRR4302533.3899511/94‑1 (MQ=60)

                        GCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTT                                                                       >  SRR4302533.2725609/1‑94 (MQ=60)

                        GCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTT                                                                       >  SRR4302533.2066284/1‑94 (MQ=60)

                         CACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTA                                                                      >  SRR4302533.2010229/1‑94 (MQ=60)

                           CGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAA                                                                    >  SRR4302533.2738669/1‑94 (MQ=60)

                           CGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAA                                                                    <  SRR4302533.6263163/94‑1 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302533.4490687/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302533.4020983/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302533.5121360/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302533.3091782/1‑94 (MQ=60)

                            GGAANCCATGTATTCCTGATACNCCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   <  SRR4302533.5204362/94‑1 (MQ=60)

                             GAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGC                                                                  <  SRR4302533.6227466/94‑1 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 <  SRR4302533.912959/94‑1 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 >  SRR4302533.4121104/1‑94 (MQ=60)

                               ATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCA                                                                >  SRR4302533.2248420/1‑94 (MQ=60)

                                TCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGAATTGGCTTTTTCATTCCCGGGGTTAAAGCCAC                                                               >  SRR4302533.2375613/1‑94 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              <  SRR4302533.286758/94‑1 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              <  SRR4302533.4780907/94‑1 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              >  SRR4302533.5936679/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             <  SRR4302533.1303517/94‑1 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302533.4172054/1‑94 (MQ=60)

                                   ATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCC                                                            >  SRR4302533.5556857/1‑94 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           >  SRR4302533.2237451/1‑94 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           <  SRR4302533.5847152/94‑1 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           >  SRR4302533.2015968/1‑94 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        >  SRR4302533.350407/1‑94 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        >  SRR4302533.830484/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAG                                                       <  SRR4302533.216377/94‑1 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302533.3254196/1‑94 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302533.381374/1‑94 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATACCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302533.2044903/1‑94 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302533.3276300/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302533.2807459/94‑1 (MQ=60)

                                               TACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGC                                                <  SRR4302533.3203985/94‑1 (MQ=60)

                                               TACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGC                                                <  SRR4302533.3158050/94‑1 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCG                                              >  SRR4302533.3908354/1‑94 (MQ=60)

                                                  ACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGC                                             >  SRR4302533.5014723/1‑94 (MQ=60)

                                                     GTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAA                                          >  SRR4302533.1073920/1‑94 (MQ=60)

                                                     GTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAA                                          >  SRR4302533.5098028/1‑94 (MQ=60)

                                                       GTTGCGCATTTCGTGGGAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCTGTGTTATAGCCACCCCAGAAGACGATGCCGCCAACA                                        >  SRR4302533.5959124/1‑94 (MQ=60)

                                                       GTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACA                                        >  SRR4302533.5687894/1‑94 (MQ=60)

                                                          GCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAA                                     <  SRR4302533.4809830/94‑1 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   >  SRR4302533.3737658/1‑94 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   <  SRR4302533.225796/94‑1 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   >  SRR4302533.1497062/1‑94 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATACCGCCAACAAAACC                                   <  SRR4302533.30609/94‑1 (MQ=60)

                                                             CATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCG                                  <  SRR4302533.1871363/94‑1 (MQ=60)

                                                             CATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCG                                  >  SRR4302533.2659451/1‑94 (MQ=60)

                                                                 TCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCA                              <  SRR4302533.3140362/94‑1 (MQ=60)

                                                                  CGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAA                             >  SRR4302533.4564220/1‑94 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            >  SRR4302533.6267554/1‑94 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            >  SRR4302533.5232710/1‑94 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            <  SRR4302533.1045616/94‑1 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            <  SRR4302533.2843314/94‑1 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAA                            >  SRR4302533.5293811/1‑94 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302533.4417335/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302533.1074835/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          >  SRR4302533.1503719/1‑94 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302533.3912531/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302533.3330956/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302533.3541900/94‑1 (MQ=60)

                                                                      GCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGC                         <  SRR4302533.4449020/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302533.2134466/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302533.2528716/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302533.3174586/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       >  SRR4302533.5476702/1‑94 (MQ=60)

                                                                         GCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGC                      <  SRR4302533.4641963/94‑1 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAAGAAAACCGATCAACAGCAGCG                     >  SRR4302533.4228308/1‑94 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     >  SRR4302533.4322687/1‑94 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGT                    <  SRR4302533.4144859/94‑1 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGT                    >  SRR4302533.3700115/1‑94 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGT                    >  SRR4302533.2931399/1‑94 (MQ=60)

                                                                            AATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTC                   >  SRR4302533.5957248/1‑94 (MQ=60)

                                                                            AATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTC                   >  SRR4302533.5853943/1‑94 (MQ=60)

                                                                              TGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCC                 >  SRR4302533.2824656/1‑94 (MQ=60)

                                                                               GCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCC                <  SRR4302533.3317125/94‑1 (MQ=60)

                                                                                GAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCA               <  SRR4302533.4105641/94‑1 (MQ=60)

                                                                                CAGAACTCTTCGGCATTTGCTTTTTCCATCCCGGAGTTCAAGCCACCCCAGAAGACGATGCCGCCAACAAAATCGAACAACAGCAGAGTCCCCA               >  SRR4302533.2458053/1‑94 (MQ=60)

                                                                                CAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCA               <  SRR4302533.3541911/94‑1 (MQ=60)

                                                                                CAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCA               >  SRR4302533.1998120/1‑94 (MQ=60)

                                                                                  GAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGC             >  SRR4302533.5980818/1‑94 (MQ=60)

                                                                                   AACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCG            <  SRR4302533.5194029/94‑1 (MQ=60)

                                                                                     CTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCC          >  SRR4302533.2149047/1‑94 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         >  SRR4302533.3795534/1‑94 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         >  SRR4302533.321824/1‑94 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         >  SRR4302533.5414819/1‑94 (MQ=60)

                                                                                       CTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAG        <  SRR4302533.5785994/94‑1 (MQ=60)

                                                                                       CTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAG        <  SRR4302533.3848401/94‑1 (MQ=60)

                                                                                        TTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGA       >  SRR4302533.2102678/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  SRR4302533.1295780/1‑94 (MQ=60)

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`