Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,290,493 |
A→G |
N164N (AAT→AAC) |
dsbE ← |
disulfide oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,290,493 | 0 | A | G | 100.0%
| 725.5
/ NA
| 223 | N164N (AAT→AAC) | dsbE | disulfide oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/109); total (114/109) |
Only 100 of 236 total aligned reads displayed.
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
gcatcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGtt > 1:3688174/1‑93 (MQ=255)
gcatcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGtt < 2:4812036/93‑1 (MQ=255)
catcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTc < 2:5461439/93‑1 (MQ=255)
atcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCa < 1:716092/93‑1 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg > 2:3651579/1‑93 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa < 1:4559471/93‑1 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa > 1:3949716/1‑93 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa < 2:2861636/93‑1 (MQ=255)
agcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAt < 1:5557371/93‑1 (MQ=255)
aCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGc > 2:5393778/1‑93 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 1:539911/93‑1 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc < 2:4154246/93‑1 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc > 1:3016957/1‑93 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc < 1:2815541/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCCGATCGGCCGCa > 2:4366009/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 2:59922/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 1:913426/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 1:2067447/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa > 1:2496805/1‑93 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt < 1:2347476/93‑1 (MQ=255)
aaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGc < 2:3448135/93‑1 (MQ=255)
aaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGc > 1:837122/1‑93 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGa < 1:5707073/93‑1 (MQ=255)
aaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAt > 2:6166188/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGCAGCGAGGGTTCAGATCGCCCGCATGGCGATa > 1:6196976/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa < 2:3122142/93‑1 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa > 2:2324564/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa < 1:4460471/93‑1 (MQ=255)
ccTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAg < 1:1355413/93‑1 (MQ=255)
ccTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAg < 2:6273761/93‑1 (MQ=255)
cTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGc > 2:138266/1‑93 (MQ=255)
aTTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa > 2:3337443/1‑93 (MQ=255)
aTTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa < 1:212017/93‑1 (MQ=255)
aTTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa > 1:1569173/1‑93 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:1476888/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga > 2:636577/1‑93 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCCTGGCGGTAGCGAatga > 2:104416/1‑93 (MQ=255)
cGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 2:1220417/93‑1 (MQ=255)
cGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc > 1:863198/1‑93 (MQ=255)
cGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 1:5857336/93‑1 (MQ=255)
gCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccg < 1:1969285/93‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt < 2:916725/93‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt < 1:3759423/93‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt > 1:1709149/1‑93 (MQ=255)
tcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttg > 1:5636646/1‑93 (MQ=255)
tcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttg > 2:687144/1‑93 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc > 1:2142063/1‑93 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc > 2:3957912/1‑93 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc < 1:2245651/93‑1 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc < 2:4986441/93‑1 (MQ=255)
tACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgccgt > 1:3198830/1‑93 (MQ=255)
cTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCa > 1:5118187/1‑93 (MQ=255)
cTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCa > 1:3838681/1‑93 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 1:4792789/93‑1 (MQ=255)
gTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAt < 1:5224277/93‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 1:1839696/93‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 2:4318891/93‑1 (MQ=255)
tttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAg < 1:5838510/93‑1 (MQ=255)
ttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGa < 2:1652097/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa > 2:2698709/1‑93 (MQ=255)
ctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaaa < 2:3731101/93‑1 (MQ=255)
cccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg < 1:6305280/93‑1 (MQ=255)
cccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg < 2:4142976/93‑1 (MQ=255)
cccACAGCGACTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg < 2:3386133/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt > 1:1001278/1‑93 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACggt > 1:1268442/1‑91 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGtt > 1:5379405/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 2:3169170/1‑93 (MQ=255)
caGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc < 1:403215/93‑1 (MQ=255)
caGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc > 1:6005597/1‑93 (MQ=255)
caGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc < 1:4910489/93‑1 (MQ=255)
aGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCt > 1:5650300/1‑93 (MQ=255)
aGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCt > 1:5078995/1‑93 (MQ=255)
aGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCt < 2:2143437/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg > 1:2238903/1‑93 (MQ=255)
cGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg < 2:3282756/93‑1 (MQ=255)
cGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg < 1:3367651/93‑1 (MQ=255)
ggCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgc < 1:1916759/93‑1 (MQ=255)
gCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcg < 1:6112563/93‑1 (MQ=255)
gCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcg > 2:3888242/1‑93 (MQ=255)
ttGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcg > 2:4723119/1‑93 (MQ=255)
ttGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcg > 1:4237995/1‑93 (MQ=255)
ttGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcg > 1:4111074/1‑93 (MQ=255)
tGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcgc > 2:2077402/1‑93 (MQ=255)
tGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcgc > 2:321700/1‑93 (MQ=255)
gATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGcc > 2:4514258/1‑93 (MQ=255)
gATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGcc > 2:5561858/1‑93 (MQ=255)
tcttTTCTTCCCAGACGCGAGGTTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 1:4351640/93‑1 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt > 1:1061611/1‑93 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa < 2:465055/93‑1 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa < 1:3537082/93‑1 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca > 2:4693726/1‑93 (MQ=255)
cttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGacac > 2:1820760/1‑93 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa > 2:860619/1‑93 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa < 1:2780877/93‑1 (MQ=255)
cgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGc > 1:265587/1‑93 (MQ=255)
cgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGc > 1:3719183/1‑93 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc < 1:5879246/93‑1 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc > 2:4057088/1‑93 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc > 2:538021/1‑93 (MQ=255)
|
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > NC_000913/2290400‑2290584
|
TCAGCATCAGCACGCCCAATAACAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGG < SRR4302533.5108599/94‑1 (MQ=60)
CAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGT < SRR4302533.2539652/94‑1 (MQ=60)
AGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTT > SRR4302533.2107970/1‑94 (MQ=60)
AGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTT < SRR4302533.2944804/94‑1 (MQ=60)
AGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTT > SRR4302533.3710840/1‑94 (MQ=60)
AGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTT < SRR4302533.3760295/94‑1 (MQ=60)
AGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTT < SRR4302533.2072862/94‑1 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAG < SRR4302533.720315/94‑1 (MQ=60)
TCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGA > SRR4302533.3973799/1‑94 (MQ=60)
CAGCACGCCCATTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT > SRR4302533.1075614/1‑94 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT > SRR4302533.2252224/1‑94 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302533.2204871/94‑1 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302533.4587125/94‑1 (MQ=60)
AGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATC < SRR4302533.5590956/94‑1 (MQ=60)
AGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATC < SRR4302533.1353694/94‑1 (MQ=60)
CACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGC < SRR4302533.2022658/94‑1 (MQ=60)
ACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCC < SRR4302533.379206/94‑1 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC > SRR4302533.3035411/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC < SRR4302533.543123/94‑1 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCG < SRR4302533.2832874/94‑1 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCC > SRR4302533.4771569/1‑94 (MQ=60)
CCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGC < SRR4302533.4359048/94‑1 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTTCCAGACGCGAGGGGTCAGATCGCCCGCC > SRR4302533.1310710/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302533.2512206/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302533.5395638/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302533.3725988/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302533.3172660/1‑94 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT < SRR4302533.4989164/94‑1 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT < SRR4302533.918793/94‑1 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT < SRR4302533.2080183/94‑1 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302533.2362000/94‑1 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG < SRR4302533.5423320/94‑1 (MQ=60)
TAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGC > SRR4302533.3324004/1‑94 (MQ=60)
TAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGC > SRR4302533.842026/1‑94 (MQ=60)
AAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAT < SRR4302533.5741545/94‑1 (MQ=60)
AAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAT > SRR4302533.831431/1‑94 (MQ=60)
AACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGCAGCGAGGGTTCAGATCGCCCGCATGGCGATA > SRR4302533.6234155/1‑94 (MQ=60)
ACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAG < SRR4302533.90990/94‑1 (MQ=60)
ACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAG < SRR4302533.4487453/94‑1 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC < SRR4302533.1363559/94‑1 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC > SRR4302533.4096547/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG > SRR4302533.3587569/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG > SRR4302533.1627663/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG < SRR4302533.2149640/94‑1 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG > SRR4302533.5923582/1‑94 (MQ=60)
TCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGA > SRR4302533.863587/1‑94 (MQ=60)
TCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGA < SRR4302533.1049185/94‑1 (MQ=60)
CATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAA > SRR4302533.1578622/1‑94 (MQ=60)
CATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAA > SRR4302533.676455/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT > SRR4302533.271187/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302533.213353/94‑1 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302533.430675/94‑1 (MQ=60)
TTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATG < SRR4302533.2328972/94‑1 (MQ=60)
GCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGC > SRR4302533.868256/1‑94 (MQ=60)
GCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGC < SRR4302533.447001/94‑1 (MQ=60)
GCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGC < SRR4302533.23447/94‑1 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302533.5892745/94‑1 (MQ=60)
GGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCG > SRR4302533.5125482/1‑94 (MQ=60)
GGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCG > SRR4302533.2548787/1‑94 (MQ=60)
GCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGT < SRR4302533.1981328/94‑1 (MQ=60)
GCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGT > SRR4302533.1719505/1‑94 (MQ=60)
CCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTT < SRR4302533.3782468/94‑1 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG > SRR4302533.767014/1‑94 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG > SRR4302533.5670729/1‑94 (MQ=60)
TCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGCCGCGAGGGTTCAGGTCGCCCGCCTGGCGATAGCGAATGATGCCGTTGC > SRR4302533.4512722/1‑94 (MQ=60)
TCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGC > SRR4302533.2155263/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC > SRR4302533.618112/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC < SRR4302533.2259529/94‑1 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGCTCGCCCGCATGGCGATAGCGAATGACGCCGTTGCCG > SRR4302533.3759343/1‑94 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCG < SRR4302533.5872350/94‑1 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCG > SRR4302533.2253409/1‑94 (MQ=60)
TTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGT > SRR4302533.3218515/1‑94 (MQ=60)
TACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGAGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTC < SRR4302533.5474528/94‑1 (MQ=60)
ACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCA > SRR4302533.3862133/1‑94 (MQ=60)
ACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCA > SRR4302533.5149112/1‑94 (MQ=60)
CTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGCTGCCGTCAA > SRR4302533.3907811/1‑94 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302533.482365/94‑1 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302533.4821829/94‑1 (MQ=60)
GTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATA < SRR4302533.5255705/94‑1 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302533.5739849/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTTCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGTCGTTGCCGTCAATAAG > SRR4302533.3994929/1‑94 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATTGCGATAGCGAATGATGCCGTTGCCGTCAATAAG > SRR4302533.5601999/1‑94 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG > SRR4302533.5682462/1‑94 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302533.1850916/94‑1 (MQ=60)
TTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGA < SRR4302533.5873810/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302533.587376/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302533.2891324/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC > SRR4302533.6295213/1‑94 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302533.5572481/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGCTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC > SRR4302533.3493921/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG < SRR4302533.2487297/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT > SRR4302533.1007124/1‑94 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT < SRR4302533.6140336/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT < SRR4302533.5819993/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT < SRR4302533.6343010/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT > SRR4302533.5411727/1‑94 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT < SRR4302533.5899371/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT > SRR4302533.3630203/1‑94 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGGT > SRR4302533.1276034/1‑94 (MQ=60)
ACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTC > SRR4302533.6041986/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302533.4940237/94‑1 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT > SRR4302533.6225800/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302533.405643/94‑1 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT > SRR4302533.4212091/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT > SRR4302533.5684455/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT > SRR4302533.1994919/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT > SRR4302533.5109692/1‑94 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302533.184923/94‑1 (MQ=60)
CAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCT < SRR4302533.5214901/94‑1 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG > SRR4302533.2252738/1‑94 (MQ=60)
CGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGC < SRR4302533.3388451/94‑1 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG > SRR4302533.1919673/1‑94 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG > SRR4302533.5967983/1‑94 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG < SRR4302533.1928460/94‑1 (MQ=60)
GCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGC < SRR4302533.6149455/94‑1 (MQ=60)
CTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCG > SRR4302533.1965503/1‑94 (MQ=60)
CTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCG > SRR4302533.4136062/1‑94 (MQ=60)
CTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCG > SRR4302533.4263593/1‑94 (MQ=60)
CTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCG > SRR4302533.269296/1‑94 (MQ=60)
TTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGC > SRR4302533.374323/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCA < SRR4302533.1366978/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT < SRR4302533.4687028/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT < SRR4302533.1828576/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT > SRR4302533.1067848/1‑94 (MQ=60)
TCTTTTCTTCCCAGACGCGAGGTTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302533.4377897/94‑1 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302533.4010276/94‑1 (MQ=60)
CTNTNNNNCCCAGACGCGAGGNNNCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAG < SRR4302533.5435793/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302533.3558882/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302533.3102841/94‑1 (MQ=60)
TCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAC > SRR4302533.5624774/1‑94 (MQ=60)
TCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAC < SRR4302533.5122023/94‑1 (MQ=60)
TCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGA > SRR4302533.5341974/1‑94 (MQ=60)
ACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGACGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCA > SRR4302533.283078/1‑94 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG < SRR4302533.2797960/94‑1 (MQ=60)
GCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGC > SRR4302533.3742012/1‑94 (MQ=60)
GCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGC > SRR4302533.267204/1‑94 (MQ=60)
GAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > SRR4302533.986151/1‑94 (MQ=60)
AGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCT < SRR4302533.5914779/94‑1 (MQ=60)
GGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > SRR4302533.5706438/1‑94 (MQ=60)
GGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > SRR4302533.3575821/1‑94 (MQ=60)
|
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > NC_000913/2290400‑2290584
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
