Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,335,614 |
T→C |
E609E (GAA→GAG) |
gyrA ← |
DNA gyrase, subunit A, type II topoisomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,335,614 | 0 | T | C | 95.9%
| 640.1
/ 11.3
| 221 | E609E (GAA→GAG) | gyrA | DNA gyrase, subunit A, type II topoisomerase |
| Reads supporting (aligned to +/- strand): ref base T (3/6); new base C (108/104); total (111/110) |
| Fisher's exact test for biased strand distribution p-value = 3.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-01 |
Only 100 of 232 total aligned reads displayed.
TCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGT > NC_000913/2335525‑2335705
|
tCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGTACGACCGGGCGCGCCACGAGTGGCTTcc > 2:8825128/1‑93 (MQ=255)
tCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTcc < 1:5884574/93‑1 (MQ=255)
cGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCg < 1:3541503/93‑1 (MQ=255)
cGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCg < 2:7714092/93‑1 (MQ=255)
aCTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAAc > 1:539164/1‑93 (MQ=255)
cTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACt > 1:1591784/1‑93 (MQ=255)
tGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGACTCCGGCAACTg > 1:4510761/1‑93 (MQ=255)
tGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACCAGTGGCCTCCGGCAACTg > 1:9729096/1‑93 (MQ=255)
ggCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGa > 1:1171577/1‑93 (MQ=255)
ggCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGa > 2:2867156/1‑93 (MQ=255)
ggCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGa < 1:151800/93‑1 (MQ=255)
ggCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGGGGCCTCCGGCAACTGa > 2:1971232/1‑93 (MQ=255)
aGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATaa < 1:9914775/93‑1 (MQ=255)
ggATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATaaa > 2:1755347/1‑93 (MQ=255)
gATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAAc > 2:5674623/1‑93 (MQ=255)
tCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACtt > 1:7272249/1‑93 (MQ=255)
gCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTc < 1:6191508/93‑1 (MQ=255)
cAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCa < 2:8133426/93‑1 (MQ=255)
aGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCAt > 1:1044464/1‑93 (MQ=255)
aGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCAt < 2:4651769/93‑1 (MQ=255)
gTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATc > 2:6369320/1‑93 (MQ=255)
gTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATc > 1:663850/1‑93 (MQ=255)
tGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGTACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCg < 2:6071495/93‑1 (MQ=255)
tGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCg < 1:3219582/93‑1 (MQ=255)
tGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCg > 2:7261715/1‑93 (MQ=255)
tGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCg > 1:8688390/1‑93 (MQ=255)
aTACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGaa < 2:3199502/93‑1 (MQ=255)
tACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAAt > 1:5247120/1‑93 (MQ=255)
gTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGTCCTCCGGCAACTGATAAACTTTCATCGAATAGa < 1:7866010/93‑1 (MQ=255)
gTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGa < 1:4309132/93‑1 (MQ=255)
gTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGa < 2:3445392/93‑1 (MQ=255)
cttCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGa < 1:3481494/92‑1 (MQ=255)
ttCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAc > 1:4379971/1‑93 (MQ=255)
ttCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAc > 2:5482940/1‑93 (MQ=255)
cGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAcgc < 1:9207865/93‑1 (MQ=255)
cGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAcgc < 1:7358835/93‑1 (MQ=255)
cGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAcgc < 2:6750994/93‑1 (MQ=255)
tCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGa > 2:6507081/1‑93 (MQ=255)
ccTGCGCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGAc < 2:8336483/93‑1 (MQ=255)
tGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCa > 1:8324893/1‑93 (MQ=255)
gCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAc > 1:6273229/1‑93 (MQ=255)
gCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAc > 1:9511615/1‑93 (MQ=255)
cTCCAGCGGCAGCAGGTTGACTGTCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACg > 1:1822928/1‑93 (MQ=255)
ccAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGc < 2:8688389/93‑1 (MQ=255)
ccAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGc < 1:10023158/93‑1 (MQ=255)
cAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCt < 1:1355759/93‑1 (MQ=255)
aGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTg > 2:539577/1‑93 (MQ=255)
aGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTg < 1:3134717/93‑1 (MQ=255)
cGGCATCAGGTTGACGATCGGACGACTGCGCCCGCCACGAGTGGCCTCGGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGga < 2:2443636/93‑1 (MQ=255)
gcagcaGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGgaga > 1:4411946/1‑93 (MQ=255)
gcagcaGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGgaga < 2:969553/93‑1 (MQ=255)
gcaacaGGTTGCCGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAGCTTTCATCGAATAGACGCGACCACGGCTGgaga < 2:3233772/93‑1 (MQ=255)
cagcagGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGaa < 2:3844303/93‑1 (MQ=255)
cagcagGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGaa > 1:6400597/1‑93 (MQ=255)
gcagGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGc > 2:1503221/1‑93 (MQ=255)
gcagGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGc < 1:2845513/93‑1 (MQ=255)
agtttGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGcac < 2:5875210/90‑1 (MQ=255)
agGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGcac > 1:6818521/1‑93 (MQ=255)
ggTTGACGATCGGACGACCGCGCGCGCCCCGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGcaca > 2:6415897/1‑93 (MQ=255)
ggTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGcaca > 1:9574539/1‑93 (MQ=255)
gTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGGTAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAg > 2:2188330/1‑93 (MQ=255)
gTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGGGACCAGGGCTGGAGAAGCACAg > 1:5687799/1‑93 (MQ=255)
tGACGATCGGACTACCGCGCGCGCCACGAGTGCCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCGGGAGAAGCACAGaa < 2:1697939/93‑1 (MQ=255)
tGACGATCGGACGACCGCGCCCGCCACGAGTGGACTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGaa < 1:7099452/93‑1 (MQ=255)
gACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGTCCACGGCTGGAGGAGCACAGAat > 2:6927178/1‑93 (MQ=255)
aCGATCGGACGGCCGCGCGCCCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAata < 1:3648805/93‑1 (MQ=255)
aCGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAata < 1:4120130/93‑1 (MQ=255)
aCGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAata < 2:9450740/93‑1 (MQ=255)
cGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGCAGAACAGAatat > 2:5124292/1‑93 (MQ=255)
aTCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATgg > 1:3069945/1‑93 (MQ=255)
tCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGt < 1:4966782/93‑1 (MQ=255)
tCGGACCCCCGCGCGCGCCCAGAGGGGCTTCCGGCAACTAATAACCTTTCATCGAATAGACGCGCCCACGGCTGGAGAAGCACAGAATATGGt < 2:7814887/93‑1 (MQ=255)
cGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTc < 1:4283691/93‑1 (MQ=255)
cGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTc > 1:4369544/1‑93 (MQ=255)
cGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTc < 1:8535651/93‑1 (MQ=255)
gacgacCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGt < 2:7932674/93‑1 (MQ=255)
gacCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGCCGTGAg > 2:6465885/1‑93 (MQ=255)
acCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAgt < 2:7561795/93‑1 (MQ=255)
acCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAgt > 2:6041327/1‑93 (MQ=255)
acCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAgt > 2:1135801/1‑93 (MQ=255)
ccGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAgtg > 2:1841025/1‑93 (MQ=255)
ccGCGCGCGCCACGAGTGGCCTCCGGCAACTAATAAACTTTCATCGAAAAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAgtg < 2:8937883/93‑1 (MQ=255)
gcgcgcCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCg < 1:9792108/93‑1 (MQ=255)
gcgcCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGcc < 1:6593713/93‑1 (MQ=255)
cgcCACGAGTGGCGTCCGGCAACTGATAATCTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGcca < 2:10040996/93‑1 (MQ=255)
cgcCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGcca > 2:5586882/1‑93 (MQ=255)
cgcCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGcca > 2:7328708/1‑93 (MQ=255)
gcCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGccac > 1:7645584/1‑93 (MQ=255)
ccACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGccacc > 2:123231/1‑93 (MQ=255)
ccACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGccacc < 1:2105231/93‑1 (MQ=255)
cACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGccacca < 2:3860581/93‑1 (MQ=255)
cACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGccacca > 1:2713330/1‑93 (MQ=255)
gcGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACcag < 1:7987620/92‑1 (MQ=255)
aCGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACcag > 1:4980087/1‑93 (MQ=255)
cGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACcagc < 2:1336947/93‑1 (MQ=255)
gAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACcagca > 2:656179/1‑93 (MQ=255)
ggggCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGGGGGTGTTCGCCACcagcagc > 2:397856/3‑92 (MQ=255)
tGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGGGTGGTCGCCACCAGCAgtc > 2:4954331/1‑93 (MQ=255)
ggCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAgtcg > 2:2782394/1‑93 (MQ=255)
cTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAgtcggt > 2:9731770/1‑93 (MQ=255)
|
TCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGT > NC_000913/2335525‑2335705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG > NC_000913/2335521‑2335707
|
AAACTAGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGAAGGTTGACTATCGGACGACCGCGCGCGCCACGAGTGGCC < SRR4302540.7766070/94‑1 (MQ=60)
TCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCG < SRR4302540.5949591/94‑1 (MQ=60)
CGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGG < SRR4302540.9307232/94‑1 (MQ=60)
CGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGG < SRR4302540.3580182/94‑1 (MQ=60)
CGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGG < SRR4302540.4418730/94‑1 (MQ=60)
GGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGC > SRR4302540.919678/1‑94 (MQ=60)
CACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAAC > SRR4302540.545001/1‑94 (MQ=60)
CACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGCTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAAC > SRR4302540.4055246/1‑94 (MQ=60)
ACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACT > SRR4302540.1609174/1‑94 (MQ=60)
CTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTG < SRR4302540.6788098/94‑1 (MQ=60)
CTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGACTCCGGCAACTG > SRR4302540.4559637/1‑94 (MQ=60)
CTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACCAGTGGCCTCCGGCAACTG > SRR4302540.9843350/1‑94 (MQ=60)
TGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGA > SRR4302540.1183706/1‑94 (MQ=60)
GGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGAT < SRR4302540.3532526/94‑1 (MQ=60)
GGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGAT < SRR4302540.153363/94‑1 (MQ=60)
GGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGAT < SRR4302540.153624/94‑1 (MQ=60)
GAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAA < SRR4302540.10016666/94‑1 (MQ=60)
CAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAA < SRR4302540.6228202/94‑1 (MQ=60)
AGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAA < SRR4302540.10030575/94‑1 (MQ=60)
AGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAA < SRR4302540.1858841/94‑1 (MQ=60)
AGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGCGGCCTCCGGCAACTGATAAA > SRR4302540.1863312/1‑94 (MQ=60)
GATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACT < SRR4302540.700607/94‑1 (MQ=60)
ATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTT > SRR4302540.7353402/1‑94 (MQ=60)
GCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCA < SRR4302540.6260440/94‑1 (MQ=60)
GCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGCCCTCCGGCAACTGATAAACTTTCA < SRR4302540.7735090/94‑1 (MQ=60)
CAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCAT < SRR4302540.8115001/94‑1 (MQ=60)
CAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCAT > SRR4302540.1055078/1‑94 (MQ=60)
AGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATC > SRR4302540.670971/1‑94 (MQ=60)
GTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCG > SRR4302540.4493922/1‑94 (MQ=60)
GTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCG > SRR4302540.3468296/1‑94 (MQ=60)
GTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCG > SRR4302540.5308890/1‑94 (MQ=60)
GTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCG > SRR4302540.8789270/1‑94 (MQ=60)
TGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGA < SRR4302540.3254559/94‑1 (MQ=60)
GATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAA > SRR4302540.6281737/1‑94 (MQ=60)
ATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAAT > SRR4302540.5304351/1‑94 (MQ=60)
ATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGACTCCGGCAACTGATAAACTTTCATCGAAT > SRR4302540.304601/1‑94 (MQ=60)
TACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATA < SRR4302540.4324714/94‑1 (MQ=60)
ACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAG < SRR4302540.5155341/94‑1 (MQ=60)
GTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGTCCTCCGGCAACTGATAAACTTTCATCGAATAGAC < SRR4302540.7957905/94‑1 (MQ=60)
GTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAC < SRR4302540.3152603/94‑1 (MQ=60)
GTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAC < SRR4302540.4356038/94‑1 (MQ=60)
GTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAC > SRR4302540.4427526/1‑94 (MQ=60)
GTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGAC > SRR4302540.2723183/1‑94 (MQ=60)
CTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGAC < SRR4302540.3519399/94‑1 (MQ=60)
TCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGC < SRR4302540.8751862/94‑1 (MQ=60)
CGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCG < SRR4302540.9318354/94‑1 (MQ=60)
CGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCG < SRR4302540.7440895/94‑1 (MQ=60)
CGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCG < SRR4302540.566923/94‑1 (MQ=60)
GTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGA > SRR4302540.1644737/1‑94 (MQ=60)
CCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACC > SRR4302540.4467253/1‑94 (MQ=60)
CCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACC > SRR4302540.808799/1‑94 (MQ=60)
CTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATCAACTTTCATCGAATAGACGCGACCA > SRR4302540.10056952/1‑94 (MQ=60)
CTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCA > SRR4302540.8421512/1‑94 (MQ=60)
TGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAC > SRR4302540.6343025/1‑94 (MQ=60)
TGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAC > SRR4302540.1286993/1‑94 (MQ=60)
TGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAC > SRR4302540.9624277/1‑94 (MQ=60)
TGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCAC > SRR4302540.1402863/1‑94 (MQ=60)
TGCTCCAGCGGCAGCAGGTTGACGATCGGACGAACGCGCGCGCCACTAGTGGCCTCCGGCAACTGATAACCTTTCATCCAATAGACGCGccccc > SRR4302540.6343027/1‑89 (MQ=60)
TCTCCAGCGGCAGCATGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACG < SRR4302540.3655956/94‑1 (MQ=60)
GCTCCAGCGGCAGCAGGTTGACTGTCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACG > SRR4302540.1842849/1‑94 (MQ=60)
TCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGC > SRR4302540.9860217/1‑94 (MQ=60)
TCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGC > SRR4302540.4450879/1‑94 (MQ=60)
CCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCT < SRR4302540.6487138/94‑1 (MQ=60)
CCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCT < SRR4302540.10139792/94‑1 (MQ=60)
CAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTG < SRR4302540.1370039/94‑1 (MQ=60)
CAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTG < SRR4302540.9420489/94‑1 (MQ=60)
CAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTG > SRR4302540.5980003/1‑94 (MQ=60)
AGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGG > SRR4302540.7047605/1‑94 (MQ=60)
AGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGG < SRR4302540.3168910/94‑1 (MQ=60)
CGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAG < SRR4302540.3984512/94‑1 (MQ=60)
GGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGA < SRR4302540.5794665/94‑1 (MQ=60)
GGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGA > SRR4302540.4459766/1‑94 (MQ=60)
GGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGA > SRR4302540.4380899/1‑94 (MQ=60)
GCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAA > SRR4302540.6471845/1‑94 (MQ=60)
AGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGC > SRR4302540.1171919/1‑94 (MQ=60)
GCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCA < SRR4302540.2876309/94‑1 (MQ=60)
GCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCA < SRR4302540.10159439/94‑1 (MQ=60)
CAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCAC > SRR4302540.6893997/1‑94 (MQ=60)
CAGGTCGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAACCTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCAC < SRR4302540.6584450/94‑1 (MQ=60)
AGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACA > SRR4302540.8432816/1‑94 (MQ=60)
AGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACA > SRR4302540.9687630/1‑94 (MQ=60)
GGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGGGACCAGGGCTGGAGAAGCACAG > SRR4302540.5750408/1‑94 (MQ=60)
GGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAG < SRR4302540.7392554/94‑1 (MQ=60)
TTGACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAA > SRR4302540.4395160/1‑94 (MQ=60)
TGACGATCGGACGACCGCGCCCGCCACGAGTGGACTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAAT < SRR4302540.7178450/94‑1 (MQ=60)
gcgagccGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATAT < SRR4302540.1911631/87‑1 (MQ=60)
ACGATCGGACGGCCGCGCGCCCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATAT < SRR4302540.3688775/94‑1 (MQ=60)
ACGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATAT < SRR4302540.4164616/94‑1 (MQ=60)
CGATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATG < SRR4302540.8042117/94‑1 (MQ=60)
GATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGG > SRR4302540.3103633/1‑94 (MQ=60)
GATCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGCCTGGAGAAGCACAGAATATGG > SRR4302540.2815156/1‑94 (MQ=60)
ATCGGCCGCCCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGT < SRR4302540.7196107/94‑1 (MQ=60)
TCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTC < SRR4302540.5020508/94‑1 (MQ=60)
TCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTC > SRR4302540.4417017/1‑94 (MQ=60)
TCGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTC < SRR4302540.5020509/94‑1 (MQ=60)
CGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCG < SRR4302540.8634823/94‑1 (MQ=60)
CGGACGACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCG < SRR4302540.4330288/94‑1 (MQ=60)
GACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGT < SRR4302540.3044136/94‑1 (MQ=60)
ACCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG < SRR4302540.3326447/94‑1 (MQ=60)
CCGCGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACCGCTGGAGCAGCACAGAATATGGTCGTGAGTGT > SRR4302540.7701344/1‑94 (MQ=60)
CGCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCG < SRR4302540.4338178/94‑1 (MQ=60)
GCGCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGC < SRR4302540.9906808/94‑1 (MQ=60)
GCGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCA < SRR4302540.6666736/94‑1 (MQ=60)
CGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCAC > SRR4302540.7731639/1‑94 (MQ=60)
CGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCAC < SRR4302540.10078846/94‑1 (MQ=60)
CGCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCAC > SRR4302540.3208007/1‑94 (MQ=60)
GCCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACC < SRR4302540.7494649/94‑1 (MQ=60)
CCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCA < SRR4302540.2127828/94‑1 (MQ=60)
CCACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCA > SRR4302540.2742589/1‑94 (MQ=60)
CACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGGGCCCACGGTTGGAGAAGaccgacaacaggtcgtgggtgttcgccccccg > SRR4302540.5033998/1‑62 (MQ=56)
CACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAG < SRR4302540.4800829/94‑1 (MQ=60)
CACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAG > SRR4302540.5033996/1‑94 (MQ=60)
GCGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGC < SRR4302540.8080628/94‑1 (MQ=60)
ACGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGC < SRR4302540.972710/94‑1 (MQ=60)
CGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCA > SRR4302540.962075/1‑94 (MQ=60)
CGAGTGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCA > SRR4302540.6670116/1‑94 (MQ=60)
TGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCG < SRR4302540.968940/94‑1 (MQ=60)
TGGCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCG > SRR4302540.1419500/1‑94 (MQ=60)
GCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGGCACCAGCAGTCGGT > SRR4302540.7655087/1‑94 (MQ=60)
GCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGT < SRR4302540.3370446/94‑1 (MQ=60)
GCCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGT > SRR4302540.5308736/1‑94 (MQ=60)
CCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTC < SRR4302540.3732848/94‑1 (MQ=60)
CCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTC < SRR4302540.4304506/94‑1 (MQ=60)
CCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTC > SRR4302540.2060248/1‑94 (MQ=60)
CCTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTC > SRR4302540.9659308/1‑94 (MQ=60)
CTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCCCCCGCAGTCGGTCG > SRR4302540.4447411/1‑94 (MQ=60)
CTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG < SRR4302540.3140074/94‑1 (MQ=60)
CTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG > SRR4302540.1065291/1‑94 (MQ=60)
CTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG > SRR4302540.5987541/1‑94 (MQ=60)
CTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG < SRR4302540.6803388/94‑1 (MQ=60)
|
AAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCG > NC_000913/2335521‑2335707
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
