Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,370,890	T→C	V105A (GTG→GCG)	b4533 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,370,890	0	T	C	100.0%	815.3 / NA	252	V105A (GTG→GCG)	b4533	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (105/147); total (105/147)

Only 100 of 261 total aligned reads displayed.

TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC  >  NC_000913/2370800‑2370979

tCTGGGTGACGCTGGCTGCAGTAAAACTGTGGGACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGa                                                                                         >  1:4887595/1‑93 (MQ=255)

tCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGa                                                                                         <  1:8878187/93‑1 (MQ=255)

 cTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAt                                                                                        <  2:9835096/93‑1 (MQ=255)

   gggTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCGTTGCGATcc                                                                                      <  1:6437865/93‑1 (MQ=255)

   gggTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATcc                                                                                      >  2:7289478/1‑93 (MQ=255)

    ggTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCt                                                                                     >  2:374824/1‑93 (MQ=255)

      tGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCg                                                                                   <  1:1556888/93‑1 (MQ=255)

      tGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCg                                                                                   <  2:6706651/93‑1 (MQ=255)

       gACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCgg                                                                                  >  2:5858005/1‑93 (MQ=255)

        gcGCTGGCGGGAGTAAAACTGTGGCACGGACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCggg                                                                                 <  1:6053067/92‑1 (MQ=255)

           ctggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGt                                                                              <  2:4316818/93‑1 (MQ=255)

            tggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTa                                                                             <  2:9170362/93‑1 (MQ=255)

              gctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACg                                                                           <  1:5605073/93‑1 (MQ=255)

               ctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACgg                                                                          >  2:9671352/1‑93 (MQ=255)

                    gTAAACCTGTGGCGCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaa                                                                     <  1:8080698/93‑1 (MQ=255)

                    gTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaa                                                                     >  1:4532334/1‑93 (MQ=255)

                     tAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaag                                                                    >  2:7691054/1‑92 (MQ=255)

                     tAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAAt                                                                    >  2:4492145/1‑93 (MQ=255)

                     tAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATCGCGATCCTCGGGAGTACGGTGTAAt                                                                    >  1:9401976/1‑93 (MQ=255)

                      aaagCTGTGGCGGGAGCCGGTAGCGCCGCGTCTCTTGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGTAGTACGGTGTAATg                                                                   <  2:8737013/93‑1 (MQ=255)

                      aaaaCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATg                                                                   <  2:5381009/93‑1 (MQ=255)

                       aaaCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATgg                                                                  <  2:5623867/93‑1 (MQ=255)

                         aCTGTGGCAGGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGc                                                                <  1:1186322/93‑1 (MQ=255)

                         aCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGc                                                                <  1:8004076/93‑1 (MQ=255)

                          cTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGcc                                                               <  2:5978617/93‑1 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              >  2:8312744/1‑93 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              >  2:4346216/1‑93 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              >  1:6653015/1‑93 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              <  1:5390515/93‑1 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              >  1:1907443/1‑93 (MQ=255)

                            gtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTg                                                             <  2:1106985/93‑1 (MQ=255)

                              ggCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAt                                                           <  2:1625517/93‑1 (MQ=255)

                               gCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGTAGTACGGTGTAATGGGCCTGAtg                                                          <  2:398988/93‑1 (MQ=255)

                               gCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAtg                                                          <  1:9342037/93‑1 (MQ=255)

                               gCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAtg                                                          <  1:5993658/93‑1 (MQ=255)

                                cACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAtgc                                                         <  2:6234155/93‑2 (MQ=255)

                                 aCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAtgtg                                                        >  2:9617017/1‑93 (MQ=255)

                                  cGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTgg                                                       >  1:9656445/1‑93 (MQ=255)

                                  cGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgg                                                       >  1:6129967/1‑93 (MQ=255)

                                   gAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTggg                                                      <  2:4886250/93‑1 (MQ=255)

                                    aaCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGGGTAATGGGCCTGATGCgggg                                                     >  1:2756680/1‑93 (MQ=255)

                                     aCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGa                                                    <  1:7615319/93‑1 (MQ=255)

                                        ggTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGatta                                                 >  1:4513396/1‑93 (MQ=255)

                                        ggTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGatta                                                 >  1:9728738/1‑93 (MQ=255)

                                         gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattat                                                <  1:8283288/93‑1 (MQ=255)

                                         gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGattat                                                >  2:777057/1‑93 (MQ=255)

                                          tATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGattatt                                               <  1:6735820/93‑1 (MQ=255)

                                          gaTCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCAGGAGTACGGTGTAATGGGCCTGATGTGGGGattatt                                               <  1:2386951/92‑1 (MQ=255)

                                           aTCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTc                                              <  2:5215616/93‑1 (MQ=255)

                                            tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattattga                                             >  1:7868145/1‑91 (MQ=255)

                                            tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCa                                             >  2:817233/1‑93 (MQ=255)

                                            tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCa                                             >  1:7789354/1‑93 (MQ=255)

                                            tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCGGGGATTATTCa                                             >  1:522763/1‑93 (MQ=255)

                                             cgccgcGTCACTGGTGTGGGGGGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGGGTAATGGGCCGGATGTGGGGATTATTGAg                                            >  2:8414188/1‑93 (MQ=255)

                                              gccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGc                                           <  1:9145779/93‑1 (MQ=255)

                                              gccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGc                                           >  2:2781055/1‑93 (MQ=255)

                                               ccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGCACGGTGTAATGGGCCTGATGTGGGGATTATTCAGcc                                          >  2:3935150/1‑92 (MQ=255)

                                                cgcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGt                                         <  1:7709587/93‑1 (MQ=255)

                                                 gcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTc                                        >  1:994959/1‑93 (MQ=255)

                                                    tCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCatt                                     >  2:217677/1‑93 (MQ=255)

                                                     cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCatta                                    <  2:7512483/93‑1 (MQ=255)

                                                      ccTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattat                                   <  1:6769170/92‑1 (MQ=255)

                                                      aCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattat                                   >  1:9315123/1‑93 (MQ=255)

                                                       cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattatt                                  >  2:3333706/1‑93 (MQ=255)

                                                       cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattatt                                  <  2:1428397/93‑1 (MQ=255)

                                                       cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattatt                                  >  1:5299907/1‑93 (MQ=255)

                                                        tGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTg                                 <  2:9074331/93‑1 (MQ=255)

                                                        tGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTg                                 >  2:2979165/1‑93 (MQ=255)

                                                        tGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTg                                 <  2:2451204/93‑1 (MQ=255)

                                                         ggagtgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGc                                >  2:7053722/4‑93 (MQ=255)

                                                          gtgtGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGcc                               <  1:7092159/93‑1 (MQ=255)

                                                           tgtggtgtggTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCt                              <  2:4981286/93‑1 (MQ=255)

                                                             tgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCa                            >  2:2833874/1‑93 (MQ=255)

                                                              ggggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAg                           >  1:213107/1‑93 (MQ=255)

                                                               gggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGt                          <  1:8535258/93‑1 (MQ=255)

                                                                ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGtt                         <  1:3509778/93‑1 (MQ=255)

                                                                   ggtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgcg                      <  1:6914736/90‑1 (MQ=255)

                                                                      gTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCaa                   <  2:2494907/93‑1 (MQ=255)

                                                                        tCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAtt                 >  2:1708893/1‑93 (MQ=255)

                                                                         cATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTa                >  2:9254954/1‑93 (MQ=255)

                                                                         cATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTa                >  1:5752059/1‑93 (MQ=255)

                                                                         cATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTa                <  2:178697/93‑1 (MQ=255)

                                                                          attattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTaa               >  1:7439836/1‑93 (MQ=255)

                                                                          attattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTaa               <  1:4177840/93‑1 (MQ=255)

                                                                           ttattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAg              >  1:4049422/1‑93 (MQ=255)

                                                                            tattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGc             <  2:2870539/93‑1 (MQ=255)

                                                                             attGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGcc            <  2:1314815/93‑1 (MQ=255)

                                                                             attGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGcc            <  2:5814469/93‑1 (MQ=255)

                                                                               tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg          <  1:4728521/93‑1 (MQ=255)

                                                                               tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg          <  2:9420801/93‑1 (MQ=255)

                                                                               tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg          <  2:7973835/93‑1 (MQ=255)

                                                                               tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg          >  2:6431957/1‑93 (MQ=255)

                                                                                ggcggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTgg         <  2:8891654/93‑1 (MQ=255)

                                                                                      aTTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTg   <  1:7243533/93‑1 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:3691756/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  <  1:8725482/93‑1 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:1452784/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:4997630/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:4362143/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:62460/1‑93 (MQ=255)

TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC  >  NC_000913/2370800‑2370979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  NC_000913/2370797‑2370983

TTGTCTGGGTGTCTCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGC                                                                                               <  SRR4302540.3213667/94‑1 (MQ=60)

TTGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGC                                                                                               <  SRR4302540.3361244/94‑1 (MQ=60)

 TGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCG                                                                                              >  SRR4302540.9990492/1‑94 (MQ=60)

 TGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCG                                                                                              <  SRR4302540.6296815/94‑1 (MQ=60)

 TGTCTGGGTGACGCTGGCTGCAGCAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCG                                                                                              <  SRR4302540.8667485/94‑1 (MQ=60)

 TGTCTGGGTGACGCTGGCTGCAGCAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCG                                                                                              <  SRR4302540.8162131/94‑1 (MQ=60)

  GTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGGACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGA                                                                                             >  SRR4302540.4940115/1‑94 (MQ=60)

  GTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGA                                                                                             <  SRR4302540.6878198/94‑1 (MQ=60)

   TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAT                                                                                            <  SRR4302540.8913205/94‑1 (MQ=60)

   TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAT                                                                                            <  SRR4302540.8980928/94‑1 (MQ=60)

   TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAT                                                                                            >  SRR4302540.8081527/1‑94 (MQ=60)

   TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAT                                                                                            >  SRR4302540.6984783/1‑94 (MQ=60)

      GGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCGTTGCGATCCT                                                                                         <  SRR4302540.6509517/94‑1 (MQ=60)

       GGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTC                                                                                        <  SRR4302540.7706044/94‑1 (MQ=60)

       GGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTC                                                                                        >  SRR4302540.10086499/1‑94 (MQ=60)

         TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      <  SRR4302540.6726739/94‑1 (MQ=60)

         TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      <  SRR4302540.1574004/94‑1 (MQ=60)

         GGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      <  SRR4302540.2078273/94‑1 (MQ=60)

         GGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      <  SRR4302540.9891709/94‑1 (MQ=60)

           GCGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGA                                                                                    <  SRR4302540.6120337/94‑1 (MQ=60)

           GCGCTGGCGGGAGTAAAACTGTGGCACGGACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGA                                                                                    <  SRR4302540.6120339/94‑1 (MQ=60)

           ACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGG                                                                                    >  SRR4302540.2046715/1‑94 (MQ=60)

            CGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAG                                                                                   <  SRR4302540.5386122/94‑1 (MQ=60)

            CGCTGGCTGCAGTAAAACTGTGGCACGAACCGGGATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAG                                                                                   >  SRR4302540.4897162/1‑94 (MQ=60)

             GCTGGCTGCAGTAAAACTGTGGCACGAACCGGTCTCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGT                                                                                  <  SRR4302540.74790/94‑1 (MQ=60)

             GCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGT                                                                                  >  SRR4302540.1494665/1‑94 (MQ=60)

             GCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGT                                                                                  >  SRR4302540.36339/1‑94 (MQ=60)

             GCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGT                                                                                  <  SRR4302540.1538606/94‑1 (MQ=60)

                 GCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGG                                                                              <  SRR4302540.3444186/94‑1 (MQ=60)

                 GCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGG                                                                              >  SRR4302540.7640666/1‑94 (MQ=60)

                 GCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGG                                                                              <  SRR4302540.5666742/94‑1 (MQ=60)

                  CTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGT                                                                             >  SRR4302540.2602974/1‑94 (MQ=60)

                   TGCAGTAAAACTGTGGCACGAACCTGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTTCGATGCTCGGGAGTACGGTG                                                                            >  SRR4302540.9806456/1‑94 (MQ=60)

                      AGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAA                                                                         >  SRR4302540.4581390/1‑94 (MQ=60)

                       GTAAACCTGTGGCGCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAAT                                                                        <  SRR4302540.8174487/94‑1 (MQ=60)

                       GTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAAT                                                                        <  SRR4302540.6061947/94‑1 (MQ=60)

                       GTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATCGCGATCCTCGGGAGTACGGTGTAAT                                                                        >  SRR4302540.9513820/1‑94 (MQ=60)

                        TAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTCTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATG                                                                       <  SRR4302540.5967887/94‑1 (MQ=60)

                        CAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCGTTGCGATCCTCGGGAGGACGGTGTAATG                                                                       >  SRR4302540.1210998/1‑94 (MQ=60)

                         AAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGG                                                                      <  SRR4302540.8138628/94‑1 (MQ=60)

                           accggcgcCACGAACCGGGATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGC                                                                    <  SRR4302540.9184110/86‑1 (MQ=60)

                            ACTGTGGCAGGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCC                                                                   <  SRR4302540.1198558/94‑1 (MQ=60)

                            ACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCC                                                                   <  SRR4302540.8097225/94‑1 (MQ=60)

                             CTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCT                                                                  >  SRR4302540.6726605/1‑94 (MQ=60)

                             CTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCT                                                                  >  SRR4302540.1928285/1‑94 (MQ=60)

                              TGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTG                                                                 >  SRR4302540.9536555/1‑94 (MQ=60)

                              TGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTG                                                                 <  SRR4302540.5449794/94‑1 (MQ=60)

                                TGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAT                                                               <  SRR4302540.1615986/94‑1 (MQ=60)

                                 GGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATG                                                              <  SRR4302540.4828435/94‑1 (MQ=60)

                                 GGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATG                                                              <  SRR4302540.2287729/94‑1 (MQ=60)

                                 GGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATG                                                              <  SRR4302540.7821383/94‑1 (MQ=60)

                                  GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGT                                                             <  SRR4302540.6060060/94‑1 (MQ=60)

                                  GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGT                                                             >  SRR4302540.6242358/1‑94 (MQ=60)

                                  GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGC                                                             <  SRR4302540.9453355/94‑1 (MQ=60)

                                  GCAAGATCCGGTAACGCCTCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGC                                                             <  SRR4302540.5521255/94‑1 (MQ=60)

                                   CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTG                                                            >  SRR4302540.7294589/1‑94 (MQ=60)

                                   CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTG                                                            <  SRR4302540.9216215/94‑1 (MQ=60)

                                    CCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGG                                                           <  SRR4302540.6589098/94‑1 (MQ=60)

                                    ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGG                                                           >  SRR4302540.9770120/1‑94 (MQ=60)

                                    ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGG                                                           >  SRR4302540.6198243/1‑94 (MQ=60)

                                    ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGG                                                           <  SRR4302540.5989451/94‑1 (MQ=60)

                                     CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGG                                                          <  SRR4302540.7921984/94‑1 (MQ=60)

                                      GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                         >  SRR4302540.9418267/1‑94 (MQ=60)

                                      GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGGGTAATGGGCCTGATGCGGGG                                                         >  SRR4302540.2786469/1‑94 (MQ=60)

                                      GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGGGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGCTGTGGGG                                                         >  SRR4302540.3472510/1‑94 (MQ=60)

                                      GAACCGGTATCGCCGCGTCACTGGTGTGGGGCGGCGGTTATTACTGGCGGCAGTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCGGGG                                                         >  SRR4302540.3893694/1‑94 (MQ=60)

                                        ACCGGTATCGCCGCGTCACTGGTGTGGTGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                       <  SRR4302540.851696/94‑1 (MQ=60)

                                        ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                       <  SRR4302540.8354887/94‑1 (MQ=60)

                                        ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                       <  SRR4302540.7700931/94‑1 (MQ=60)

                                         CCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATT                                                      <  SRR4302540.4132119/94‑1 (MQ=60)

                                         CCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATT                                                      <  SRR4302540.7153869/94‑1 (MQ=60)

                                          CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTA                                                     <  SRR4302540.6769142/94‑1 (MQ=60)

                                          CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTA                                                     >  SRR4302540.4562295/1‑94 (MQ=60)

                                          CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                     >  SRR4302540.9842988/1‑94 (MQ=60)

                                          CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                     >  SRR4302540.9448305/1‑94 (MQ=60)

                                            GTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATT                                                   <  SRR4302540.8379498/94‑1 (MQ=60)

                                             TATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTC                                                  <  SRR4302540.6810214/94‑1 (MQ=60)

                                             GATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCAGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTC                                                  <  SRR4302540.2412679/94‑1 (MQ=60)

                                              ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTGA                                                 >  SRR4302540.7960067/1‑94 (MQ=60)

                                              ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCA                                                 >  SRR4302540.7880406/1‑94 (MQ=60)

                                              ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCGGGGATTATTCA                                                 >  SRR4302540.528388/1‑94 (MQ=60)

                                                CGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGC                                               <  SRR4302540.2308996/94‑1 (MQ=60)

                                                CGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGC                                               <  SRR4302540.5289799/94‑1 (MQ=60)

                                                 GCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCG                                              <  SRR4302540.9255632/94‑1 (MQ=60)

                                                  CCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGT                                             <  SRR4302540.9479848/94‑1 (MQ=60)

                                                   CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTC                                            >  SRR4302540.4491413/1‑94 (MQ=60)

                                                   CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                            <  SRR4302540.7798139/94‑1 (MQ=60)

                                                   CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                            >  SRR4302540.1005092/1‑94 (MQ=60)

                                                        CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                       >  SRR4302540.9426293/1‑94 (MQ=60)

                                                         CCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                      <  SRR4302540.6843977/94‑1 (MQ=60)

                                                         ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                      <  SRR4302540.3905283/94‑1 (MQ=60)

                                                         ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                      >  SRR4302540.5357895/1‑94 (MQ=60)

                                                         ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                      <  SRR4302540.9368169/94‑1 (MQ=60)

                                                             GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                  >  SRR4302540.497081/1‑94 (MQ=60)

                                                             GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                  >  SRR4302540.623624/1‑94 (MQ=60)

                                                             GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                  <  SRR4302540.430251/94‑1 (MQ=60)

                                                             GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                  <  SRR4302540.7171078/94‑1 (MQ=60)

                                                                TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                               >  SRR4302540.215193/1‑94 (MQ=60)

                                                                  GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                             <  SRR4302540.5221228/94‑1 (MQ=60)

                                                                  GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                             <  SRR4302540.8634424/94‑1 (MQ=60)

                                                                  GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                             <  SRR4302540.8040856/94‑1 (MQ=60)

                                                                   GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302540.3548005/94‑1 (MQ=60)

                                                                   GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302540.5448265/94‑1 (MQ=60)

                                                                    GTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGC                           >  SRR4302540.6136444/1‑94 (MQ=60)

                                                                      GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGC                         <  SRR4302540.8409238/94‑1 (MQ=60)

                                                                      GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGC                         <  SRR4302540.6991681/94‑1 (MQ=60)

                                                                       GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                        >  SRR4302540.5705582/1‑94 (MQ=60)

                                                                       GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                        >  SRR4302540.5482785/1‑94 (MQ=60)

                                                                       GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                        >  SRR4302540.6819673/1‑94 (MQ=60)

                                                                        TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                       >  SRR4302540.4682545/1‑94 (MQ=60)

                                                                        TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                       >  SRR4302540.4682544/1‑94 (MQ=60)

                                                                          TTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATT                     >  SRR4302540.10035056/1‑94 (MQ=60)

                                                                           TCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTA                    >  SRR4302540.5815547/1‑94 (MQ=60)

                                                                            TATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                   <  SRR4302540.7918662/94‑1 (MQ=60)

                                                                            CATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                   >  SRR4302540.7522735/1‑94 (MQ=60)

                                                                             ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  <  SRR4302540.9446328/94‑1 (MQ=60)

                                                                             ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  >  SRR4302540.4093079/1‑94 (MQ=60)

                                                                             ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  <  SRR4302540.4223196/94‑1 (MQ=60)

                                                                             ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  <  SRR4302540.7460579/94‑1 (MQ=60)

                                                                              TTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGC                 >  SRR4302540.6463830/1‑94 (MQ=60)

                                                                              TTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGC                 <  SRR4302540.7717799/94‑1 (MQ=60)

                                                                                ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT               <  SRR4302540.8696602/94‑1 (MQ=60)

                                                                                ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT               <  SRR4302540.3736518/94‑1 (MQ=60)

                                                                                ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT               <  SRR4302540.8853489/94‑1 (MQ=60)

                                                                                  TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG             <  SRR4302540.4779018/94‑1 (MQ=60)

                                                                                   GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG            <  SRR4302540.9755587/94‑1 (MQ=60)

                                                                                   GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG            <  SRR4302540.510508/94‑1 (MQ=60)

                                                                                    GCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGT           <  SRR4302540.4511573/94‑1 (MQ=60)

                                                                                       GCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTT        <  SRR4302540.8290329/94‑1 (MQ=60)

                                                                                        CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG       <  SRR4302540.4166203/94‑1 (MQ=60)

                                                                                        CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG       >  SRR4302540.6939416/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGTCTCAGTTGCGCAATTAAGCCTGTGTTTTGC      >  SRR4302540.4569275/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302540.1468586/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302540.3732077/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      <  SRR4302540.6588534/94‑1 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302540.5051738/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      <  SRR4302540.7324338/94‑1 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      <  SRR4302540.7324333/94‑1 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302540.63089/1‑94 (MQ=60)

                                                                                         ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302540.4409570/1‑94 (MQ=60)

                                                                                          TTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCG     <  SRR4302540.8826804/94‑1 (MQ=60)

                                                                                           TGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGG    <  SRR4302540.6190467/94‑1 (MQ=60)

                                                                                           TGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGG    >  SRR4302540.2107665/1‑94 (MQ=60)

                                                                                             CGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  SRR4302540.7268025/1‑94 (MQ=60)

TTGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  NC_000913/2370797‑2370983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`