Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  NC_000913/2370831‑2371017
                                                                                             |                                                                                             
GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGT                                                                                               <  SRR4302540.6060060/94‑1 (MQ=60)
GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGT                                                                                               >  SRR4302540.6242358/1‑94 (MQ=60)
GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGC                                                                                               <  SRR4302540.9453355/94‑1 (MQ=60)
GCAAGATCCGGTAACGCCTCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGC                                                                                               <  SRR4302540.5521255/94‑1 (MQ=60)
 CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTG                                                                                              >  SRR4302540.7294589/1‑94 (MQ=60)
 CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTG                                                                                              <  SRR4302540.9216215/94‑1 (MQ=60)
  CCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGG                                                                                             <  SRR4302540.6589098/94‑1 (MQ=60)
  ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGG                                                                                             >  SRR4302540.9770120/1‑94 (MQ=60)
  ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGG                                                                                             <  SRR4302540.5989451/94‑1 (MQ=60)
  ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGG                                                                                             >  SRR4302540.6198243/1‑94 (MQ=60)
   CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGG                                                                                            <  SRR4302540.7921984/94‑1 (MQ=60)
    GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302540.9418267/1‑94 (MQ=60)
    GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGGGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302540.2786469/1‑94 (MQ=60)
    GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGGGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGCTGTGGGG                                                                                           >  SRR4302540.3472510/1‑94 (MQ=60)
    GAACCGGTATCGCCGCGTCACTGGTGTGGGGCGGCGGTTATTACTGGCGGCAGTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302540.3893694/1‑94 (MQ=60)
      ACCGGTATCGCCGCGTCACTGGTGTGGTGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                                                         <  SRR4302540.851696/94‑1 (MQ=60)
      ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                                                         <  SRR4302540.8354887/94‑1 (MQ=60)
      ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                                                         <  SRR4302540.7700931/94‑1 (MQ=60)
       CCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATT                                                                                        <  SRR4302540.4132119/94‑1 (MQ=60)
       CCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATT                                                                                        <  SRR4302540.7153869/94‑1 (MQ=60)
        CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTA                                                                                       <  SRR4302540.6769142/94‑1 (MQ=60)
        CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTA                                                                                       >  SRR4302540.4562295/1‑94 (MQ=60)
        CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                                                       >  SRR4302540.9842988/1‑94 (MQ=60)
        CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                                                       >  SRR4302540.9448305/1‑94 (MQ=60)
          GTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATT                                                                                     <  SRR4302540.8379498/94‑1 (MQ=60)
           TATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTC                                                                                    <  SRR4302540.6810214/94‑1 (MQ=60)
           GATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCAGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTC                                                                                    <  SRR4302540.2412679/94‑1 (MQ=60)
            ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTGA                                                                                   >  SRR4302540.7960067/1‑94 (MQ=60)
            ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCA                                                                                   >  SRR4302540.7880406/1‑94 (MQ=60)
            ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCGGGGATTATTCA                                                                                   >  SRR4302540.528388/1‑94 (MQ=60)
              CGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGC                                                                                 <  SRR4302540.2308996/94‑1 (MQ=60)
              CGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGC                                                                                 <  SRR4302540.5289799/94‑1 (MQ=60)
               GCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCG                                                                                <  SRR4302540.9255632/94‑1 (MQ=60)
                CCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGT                                                                               <  SRR4302540.9479848/94‑1 (MQ=60)
                 CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTC                                                                              >  SRR4302540.4491413/1‑94 (MQ=60)
                 CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                                                              <  SRR4302540.7798139/94‑1 (MQ=60)
                 CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                                                              >  SRR4302540.1005092/1‑94 (MQ=60)
                      CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                                                         >  SRR4302540.9426293/1‑94 (MQ=60)
                       CCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        <  SRR4302540.6843977/94‑1 (MQ=60)
                       ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                                                        <  SRR4302540.3905283/94‑1 (MQ=60)
                       ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        >  SRR4302540.5357895/1‑94 (MQ=60)
                       ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        <  SRR4302540.9368169/94‑1 (MQ=60)
                           GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                                                    >  SRR4302540.623624/1‑94 (MQ=60)
                           GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                                                    <  SRR4302540.430251/94‑1 (MQ=60)
                           GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                                                    <  SRR4302540.7171078/94‑1 (MQ=60)
                           GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCT                                                                    >  SRR4302540.497081/1‑94 (MQ=60)
                              TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                                                                 >  SRR4302540.215193/1‑94 (MQ=60)
                                GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                                                               <  SRR4302540.8634424/94‑1 (MQ=60)
                                GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                                                               <  SRR4302540.5221228/94‑1 (MQ=60)
                                GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                                                               <  SRR4302540.8040856/94‑1 (MQ=60)
                                 GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                                                              <  SRR4302540.3548005/94‑1 (MQ=60)
                                 GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                                                              <  SRR4302540.5448265/94‑1 (MQ=60)
                                  GTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGC                                                             >  SRR4302540.6136444/1‑94 (MQ=60)
                                    GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGC                                                           <  SRR4302540.8409238/94‑1 (MQ=60)
                                    GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGC                                                           <  SRR4302540.6991681/94‑1 (MQ=60)
                                     GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                                                          >  SRR4302540.5705582/1‑94 (MQ=60)
                                     GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                                                          >  SRR4302540.6819673/1‑94 (MQ=60)
                                     GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                                                          >  SRR4302540.5482785/1‑94 (MQ=60)
                                      TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                                                         >  SRR4302540.4682545/1‑94 (MQ=60)
                                      TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                                                         >  SRR4302540.4682544/1‑94 (MQ=60)
                                        TTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATT                                                       >  SRR4302540.10035056/1‑94 (MQ=60)
                                         TCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTA                                                      >  SRR4302540.5815547/1‑94 (MQ=60)
                                          TATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                                                     <  SRR4302540.7918662/94‑1 (MQ=60)
                                          CATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                                                     >  SRR4302540.7522735/1‑94 (MQ=60)
                                           ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                                                    >  SRR4302540.4093079/1‑94 (MQ=60)
                                           ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                                                    <  SRR4302540.9446328/94‑1 (MQ=60)
                                           ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                                                    <  SRR4302540.4223196/94‑1 (MQ=60)
                                           ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                                                    <  SRR4302540.7460579/94‑1 (MQ=60)
                                            TTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGC                                                   <  SRR4302540.7717799/94‑1 (MQ=60)
                                            TTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGC                                                   >  SRR4302540.6463830/1‑94 (MQ=60)
                                              ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT                                                 <  SRR4302540.8696602/94‑1 (MQ=60)
                                              ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT                                                 <  SRR4302540.3736518/94‑1 (MQ=60)
                                              ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT                                                 <  SRR4302540.8853489/94‑1 (MQ=60)
                                                TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG                                               <  SRR4302540.4779018/94‑1 (MQ=60)
                                                 GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG                                              <  SRR4302540.510508/94‑1 (MQ=60)
                                                 GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG                                              <  SRR4302540.9755587/94‑1 (MQ=60)
                                                  GCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGT                                             <  SRR4302540.4511573/94‑1 (MQ=60)
                                                     GCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTT                                          <  SRR4302540.8290329/94‑1 (MQ=60)
                                                      CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG                                         <  SRR4302540.4166203/94‑1 (MQ=60)
                                                      CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG                                         >  SRR4302540.6939416/1‑94 (MQ=60)
                                                       atttcGATCCTCGGGAGTACGGTGTAATGGGCCTGATGGGGGGATTATTCAGCGTCATTATTCCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        <  SRR4302540.3220437/89‑1 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGTCTCAGTTGCGCAATTAAGCCTGTGTTTTGC                                        >  SRR4302540.4569275/1‑94 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        >  SRR4302540.3732077/1‑94 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        <  SRR4302540.6588534/94‑1 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        >  SRR4302540.1468586/1‑94 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        >  SRR4302540.4409570/1‑94 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        <  SRR4302540.7324338/94‑1 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        >  SRR4302540.5051738/1‑94 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        <  SRR4302540.7324333/94‑1 (MQ=60)
                                                       ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC                                        >  SRR4302540.63089/1‑94 (MQ=60)
                                                        TTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCG                                       <  SRR4302540.8826804/94‑1 (MQ=60)
                                                         TGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGG                                      <  SRR4302540.6190467/94‑1 (MQ=60)
                                                         TGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGG                                      >  SRR4302540.2107665/1‑94 (MQ=60)
                                                           CGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG                                    >  SRR4302540.7268025/1‑94 (MQ=60)
                                                             ATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCTAG                                  >  SRR4302540.7432667/1‑94 (MQ=60)
                                                             ATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAG                                  >  SRR4302540.939604/1‑94 (MQ=60)
                                                              TCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGT                                 <  SRR4302540.3141393/94‑1 (MQ=60)
                                                                CTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCA                               <  SRR4302540.6141889/94‑1 (MQ=60)
                                                                CTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCA                               >  SRR4302540.9946233/1‑94 (MQ=60)
                                                                 TCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCAT                              <  SRR4302540.8938281/94‑1 (MQ=60)
                                                                 TCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCAT                              >  SRR4302540.181534/1‑94 (MQ=60)
                                                                 TCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCAT                              >  SRR4302540.4487975/1‑94 (MQ=60)
                                                                   GGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            >  SRR4302540.7791683/1‑94 (MQ=60)
                                                                   GGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            <  SRR4302540.7772551/94‑1 (MQ=60)
                                                                   GGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            <  SRR4302540.823034/94‑1 (MQ=60)
                                                                   GGGAGTACGGTGTAATGGGCCTGATGCGGGAATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            <  SRR4302540.7772553/94‑1 (MQ=60)
                                                                    GGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTG                           <  SRR4302540.3499114/94‑1 (MQ=60)
                                                                    GGAGTACCGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTG                           <  SRR4302540.3499113/94‑1 (MQ=60)
                                                                      AGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCC                         <  SRR4302540.7363566/94‑1 (MQ=60)
                                                                      AGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCC                         <  SRR4302540.8768897/94‑1 (MQ=60)
                                                                        TACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGC                       >  SRR4302540.4639098/1‑94 (MQ=60)
                                                                         ACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCC                      <  SRR4302540.303888/94‑1 (MQ=60)
                                                                          CGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCG                     >  SRR4302540.2512157/1‑94 (MQ=60)
                                                                            GTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGAT                   <  SRR4302540.1983143/94‑1 (MQ=60)
                                                                            GTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGAT                   >  SRR4302540.1165377/1‑94 (MQ=60)
                                                                              GTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGA                 >  SRR4302540.2514976/1‑94 (MQ=60)
                                                                              GTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGA                 >  SRR4302540.9693947/1‑94 (MQ=60)
                                                                              GTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGA                 >  SRR4302540.7204103/1‑94 (MQ=60)
                                                                               TAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGAC                >  SRR4302540.5290678/1‑94 (MQ=60)
                                                                                    GGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGCTTTGCGGCGAGCCATCTGCCGCCGATGACGCACT           >  SRR4302540.1446795/1‑94 (MQ=60)
                                                                                    GGCCTGATGTGGGGATTATTCAGCGCCATTATTGCCTCAGTTGCGCAATTGAGCCTGGGTTTTGCGGCGAGCCATCTGCCGCCGATGACGAACT           >  SRR4302540.1446797/1‑94 (MQ=60)
                                                                                      CCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTA         >  SRR4302540.1242490/1‑94 (MQ=60)
                                                                                      CCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTA         >  SRR4302540.4576023/1‑94 (MQ=60)
                                                                                      CCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTA         >  SRR4302540.952894/1‑94 (MQ=60)
                                                                                       CTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        >  SRR4302540.6683964/1‑94 (MQ=60)
                                                                                       CTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        >  SRR4302540.7686414/1‑94 (MQ=60)
                                                                                       CTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        <  SRR4302540.9349489/94‑1 (MQ=60)
                                                                                          ATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGG     >  SRR4302540.9065838/1‑94 (MQ=60)
                                                                                           TGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGA    <  SRR4302540.7443245/94‑1 (MQ=60)
                                                                                            GTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGAT   >  SRR4302540.2164670/1‑94 (MQ=60)
                                                                                            GCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGAT   <  SRR4302540.4672173/94‑1 (MQ=60)
                                                                                             TGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  SRR4302540.1287688/1‑94 (MQ=60)
                                                                                             TGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  <  SRR4302540.3415826/94‑1 (MQ=60)
                                                                                             CGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  SRR4302540.6049028/1‑94 (MQ=60)
                                                                                             CGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  SRR4302540.4236183/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  NC_000913/2370831‑2371017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑