Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,370,924 T→C W5R (TGG→CGG)  b2258 → putative transport/receptor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,370,9240TC100.0% 684.5 / NA 211W5R (TGG→CGG) b2258putative transport/receptor protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (93/118);  total (93/118)

Only 100 of 215 total aligned reads displayed.

CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGG  >  NC_000913/2370834‑2371013
                                                                                          |                                                                                         
cGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgg                                                                                         <  2:2107556/93‑1 (MQ=255)
cGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgg                                                                                         <  1:3162158/93‑1 (MQ=255)
 gAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCggg                                                                                        <  2:721297/93‑1 (MQ=255)
  aaCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgggg                                                                                       >  1:128664/1‑93 (MQ=255)
  aaCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgggg                                                                                       <  1:1943405/93‑1 (MQ=255)
  aaCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgggg                                                                                       >  2:1634481/1‑93 (MQ=255)
  aaCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCgggg                                                                                       <  2:1036152/93‑1 (MQ=255)
   aCCGGTATCTCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGa                                                                                      <  1:626518/93‑1 (MQ=255)
   aCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGa                                                                                      <  1:3771612/93‑1 (MQ=255)
    ccGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGat                                                                                     <  1:4464890/93‑1 (MQ=255)
    ccGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGCGat                                                                                     >  2:5808832/1‑93 (MQ=255)
     cGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGgtt                                                                                    >  2:8437/1‑93 (MQ=255)
      ggTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGatta                                                                                   <  2:4478593/93‑1 (MQ=255)
      ggTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGatta                                                                                   <  2:3939607/93‑1 (MQ=255)
       gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGattat                                                                                  >  1:4055476/1‑93 (MQ=255)
       gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGattat                                                                                  <  1:2761222/93‑1 (MQ=255)
        tATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGattatt                                                                                 <  2:6021576/93‑1 (MQ=255)
          tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCa                                                                               <  1:351160/93‑1 (MQ=255)
           cgccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAg                                                                              <  2:4125341/93‑1 (MQ=255)
            gccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGc                                                                             <  1:5597181/93‑1 (MQ=255)
               gcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTATGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTc                                                                          >  1:355411/1‑93 (MQ=255)
               gcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTc                                                                          >  2:5617501/1‑93 (MQ=255)
               gcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTc                                                                          >  2:1401832/1‑93 (MQ=255)
               gcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTc                                                                          >  1:2161567/1‑93 (MQ=255)
                cgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCa                                                                         <  1:3663257/93‑1 (MQ=255)
                cgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCa                                                                         >  2:6092743/1‑93 (MQ=255)
                 gTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCat                                                                        >  2:5754612/1‑93 (MQ=255)
                 gTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCat                                                                        >  2:5521763/1‑93 (MQ=255)
                  tCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCatt                                                                       >  1:2912145/1‑93 (MQ=255)
                   gaCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCatta                                                                      <  2:2943224/92‑1 (MQ=255)
                   cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCatta                                                                      <  1:4921314/93‑1 (MQ=255)
                    aCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattat                                                                     >  1:6223821/1‑93 (MQ=255)
                     cTGGTGTGGTGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattatt                                                                    <  1:743884/93‑1 (MQ=255)
                     cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCattatt                                                                    >  1:2066991/1‑93 (MQ=255)
                          gtgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTc                                                               <  2:1009057/93‑1 (MQ=255)
                          gtgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTc                                                               <  1:3105271/93‑1 (MQ=255)
                           tgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCa                                                              >  2:1098205/1‑93 (MQ=255)
                            ggggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAg                                                             >  1:5810694/1‑93 (MQ=255)
                             gggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGt                                                            >  1:3694453/1‑93 (MQ=255)
                             gggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGt                                                            <  2:1994185/93‑1 (MQ=255)
                              ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGtt                                                           <  2:1726017/93‑1 (MQ=255)
                              ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGtt                                                           <  2:426727/93‑1 (MQ=255)
                              ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGtt                                                           >  1:5442486/1‑93 (MQ=255)
                                tGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgc                                                         >  1:632034/1‑93 (MQ=255)
                                tGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgc                                                         <  1:1022812/93‑1 (MQ=255)
                                tGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgc                                                         <  2:4591930/93‑1 (MQ=255)
                                  gtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgcgc                                                       <  2:2831505/91‑1 (MQ=255)
                                  gtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTgcgc                                                       >  1:2034487/3‑93 (MQ=255)
                                   tgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCa                                                      >  1:2775196/2‑93 (MQ=255)
                                   tgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCa                                                      <  2:1711579/92‑1 (MQ=255)
                                     ttCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAt                                                    >  1:3959587/1‑93 (MQ=255)
                                      tCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAtt                                                   >  1:5984120/1‑93 (MQ=255)
                                      tCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAtt                                                   <  1:421938/93‑1 (MQ=255)
                                       cATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTa                                                  <  2:5920849/93‑1 (MQ=255)
                                       cATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTa                                                  <  2:1467118/93‑1 (MQ=255)
                                            ttGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCt                                             <  2:2896604/93‑1 (MQ=255)
                                            ttGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCt                                             >  2:2610938/1‑93 (MQ=255)
                                             tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg                                            <  2:5026931/93‑1 (MQ=255)
                                               gcggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTggg                                          <  2:1938614/93‑1 (MQ=255)
                                                cggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGt                                         <  2:3202575/93‑1 (MQ=255)
                                                cggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGt                                         <  1:5620234/93‑1 (MQ=255)
                                                   cATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGtttt                                      <  2:4760525/93‑1 (MQ=255)
                                                     ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc                                    <  2:5364946/93‑1 (MQ=255)
                                                     ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc                                    >  2:5112414/1‑93 (MQ=255)
                                                      tgcgATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgcg                                   <  2:2455680/90‑1 (MQ=255)
                                                       gcgATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgcgg                                  <  1:6179351/91‑1 (MQ=255)
                                                          aTCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgcggcgg                               >  2:1913387/1‑92 (MQ=255)
                                                           tCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAg                              <  1:1542756/93‑1 (MQ=255)
                                                            ccTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGt                             >  2:2064026/1‑93 (MQ=255)
                                                              tCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCa                           <  1:3436512/93‑1 (MQ=255)
                                                              tCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCa                           >  2:5359041/1‑93 (MQ=255)
                                                              tCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCa                           >  1:6073439/1‑93 (MQ=255)
                                                                gggAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATc                         >  1:5017425/1‑93 (MQ=255)
                                                                gggAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATc                         <  1:2492330/93‑1 (MQ=255)
                                                                  gAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTg                       >  2:3083898/1‑93 (MQ=255)
                                                                   aGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgc                      <  2:69116/93‑1 (MQ=255)
                                                                   aGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgc                      <  1:4735694/93‑1 (MQ=255)
                                                                    gTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgcc                     <  1:4272380/93‑1 (MQ=255)
                                                                    gTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgcc                     >  2:478163/1‑93 (MQ=255)
                                                                      aCGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgccgc                   <  1:5832796/93‑1 (MQ=255)
                                                                       cGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgccgcc                  <  1:4398269/93‑1 (MQ=255)
                                                                       cGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTgccgcc                  >  2:494413/1‑93 (MQ=255)
                                                                         gtgtAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGa                >  2:4840750/1‑93 (MQ=255)
                                                                         gtgtAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATATGccgccgt                >  1:3263507/1‑92 (MQ=255)
                                                                           gtAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATg              >  1:2023336/1‑93 (MQ=255)
                                                                            tAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGa             <  1:1785455/93‑1 (MQ=255)
                                                                            tAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGa             <  1:3600982/93‑1 (MQ=255)
                                                                             aaTGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGAc            <  1:4206372/93‑1 (MQ=255)
                                                                              aTGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACg           <  2:1783626/93‑1 (MQ=255)
                                                                              aTGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACg           >  2:2270508/1‑93 (MQ=255)
                                                                               tGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGc          >  1:4984610/1‑93 (MQ=255)
                                                                                 ggCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCAc        >  2:634196/1‑93 (MQ=255)
                                                                                  gCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGTAATTAACCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACt       <  2:3429558/93‑1 (MQ=255)
                                                                                  gCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACt       <  2:3512474/93‑1 (MQ=255)
                                                                                    cTGATGCGGTGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTa     <  1:2706489/93‑1 (MQ=255)
                                                                                    cTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTa     >  1:3810176/1‑93 (MQ=255)
                                                                                    cTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTa     <  1:3327219/93‑1 (MQ=255)
                                                                                     tGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAt    <  1:5241837/93‑1 (MQ=255)
                                                                                     tGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAt    >  1:3202702/1‑93 (MQ=255)
                                                                                      gATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTTCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATg   <  2:233611/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGG  >  NC_000913/2370834‑2371013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  NC_000913/2370832‑2371017
                                                                                            |                                                                                             
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCG                                                                                              >  SRR4302533.5821342/1‑94 (MQ=60)
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCG                                                                                              >  SRR4302533.6288393/1‑94 (MQ=60)
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCG                                                                                              <  SRR4302533.2992719/94‑1 (MQ=60)
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGCG                                                                                              >  SRR4302533.5345241/1‑94 (MQ=60)
 ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGG                                                                                             <  SRR4302533.5573845/94‑1 (MQ=60)
  CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGG                                                                                            <  SRR4302533.3181619/94‑1 (MQ=60)
   GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302533.129471/1‑94 (MQ=60)
   GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           <  SRR4302533.3473002/94‑1 (MQ=60)
   GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302533.4628914/1‑94 (MQ=60)
   GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302533.2038190/1‑94 (MQ=60)
   GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTACTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGG                                                                                           >  SRR4302533.3398583/1‑94 (MQ=60)
    AACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGA                                                                                          <  SRR4302533.3266079/94‑1 (MQ=60)
    AACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGA                                                                                          <  SRR4302533.1955260/94‑1 (MQ=60)
     ACCGGTATCTCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGAT                                                                                         <  SRR4302533.630198/94‑1 (MQ=60)
     ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGAT                                                                                         <  SRR4302533.4373461/94‑1 (MQ=60)
     ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGAT                                                                                         <  SRR4302533.3794733/94‑1 (MQ=60)
      CCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATT                                                                                        <  SRR4302533.4491896/94‑1 (MQ=60)
       CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                                                       <  SRR4302533.3146698/94‑1 (MQ=60)
       CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTA                                                                                       >  SRR4302533.2128923/1‑94 (MQ=60)
        GGTATCGCCGCGTCACTGGTGTNGGGTGGTGTTCATTNTTGGCGGCATTGCNATNCTCGGGAGNACGGTGTANGNGGCCTNANGCNGNGNTNAT                                                                                      >  SRR4302533.973216/1‑94 (MQ=60)
        GGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTAT                                                                                      >  SRR4302533.4080167/1‑94 (MQ=60)
         GTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATT                                                                                     <  SRR4302533.2778147/94‑1 (MQ=60)
           ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCA                                                                                   <  SRR4302533.4239428/94‑1 (MQ=60)
            TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAG                                                                                  <  SRR4302533.5509830/94‑1 (MQ=60)
            TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAG                                                                                  <  SRR4302533.3570162/94‑1 (MQ=60)
            TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAG                                                                                  <  SRR4302533.353302/94‑1 (MQ=60)
            TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAG                                                                                  <  SRR4302533.1425457/94‑1 (MQ=60)
             CGCCGCGTCACTGGTGTGGGGAGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGGGTAGTGGGCCTGATGCGGGGATTATTCAGC                                                                                 >  SRR4302533.1403174/1‑94 (MQ=60)
              GCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCG                                                                                <  SRR4302533.5630998/94‑1 (MQ=60)
                CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTATGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                                                              >  SRR4302533.357577/1‑94 (MQ=60)
                CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTC                                                                              >  SRR4302533.2174872/1‑94 (MQ=60)
                 GCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCA                                                                             >  SRR4302533.2001600/1‑94 (MQ=60)
                  CGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCAT                                                                            <  SRR4302533.3685777/94‑1 (MQ=60)
                   GTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATT                                                                           >  SRR4302533.2930019/1‑94 (MQ=60)
                     CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                                                         >  SRR4302533.368025/1‑94 (MQ=60)
                     CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                                                         >  SRR4302533.6261118/1‑94 (MQ=60)
                     CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                                                         <  SRR4302533.3586695/94‑1 (MQ=60)
                     CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTAT                                                                         <  SRR4302533.4951125/94‑1 (MQ=60)
                      ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        <  SRR4302533.5915335/94‑1 (MQ=60)
                      ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        <  SRR4302533.4102867/94‑1 (MQ=60)
                      ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATT                                                                        >  SRR4302533.2079727/1‑94 (MQ=60)
                       CTGGTGTGGTGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTG                                                                       <  SRR4302533.748262/94‑1 (MQ=60)
                       CTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTG                                                                       <  SRR4302533.6234340/94‑1 (MQ=60)
                         GGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCC                                                                     >  SRR4302533.6199760/1‑94 (MQ=60)
                           TGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTC                                                                   <  SRR4302533.3950524/94‑1 (MQ=60)
                            GTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCA                                                                  <  SRR4302533.3124360/94‑1 (MQ=60)
                             TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAG                                                                 >  SRR4302533.5323832/1‑94 (MQ=60)
                             TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAG                                                                 >  SRR4302533.5845781/1‑94 (MQ=60)
                              GGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGT                                                                >  SRR4302533.3717146/1‑94 (MQ=60)
                               GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTT                                                               >  SRR4302533.5475271/1‑94 (MQ=60)
                               GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTT                                                               <  SRR4302533.6298214/94‑1 (MQ=60)
                                 GTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGC                                                             >  SRR4302533.635754/1‑94 (MQ=60)
                                  TGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCG                                                            >  SRR4302533.1264327/1‑94 (MQ=60)
                                  TGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCG                                                            <  SRR4302533.1028824/94‑1 (MQ=60)
                                   GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGGGAACGGGGTAATGGGCCTGTTGCGGGGATTATCCAGCGCCTTTATTGCTTCAGTTGGGC                                                           >  SRR4302533.3590082/1‑94 (MQ=30)
                                   GGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGC                                                           >  SRR4302533.2047038/1‑94 (MQ=60)
                                    GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                                                          >  SRR4302533.4441984/1‑94 (MQ=60)
                                    GTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCA                                                          >  SRR4302533.2792240/1‑94 (MQ=60)
                                     TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                                                         >  SRR4302533.2078504/1‑94 (MQ=60)
                                      GTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAT                                                        >  SRR4302533.259941/1‑94 (MQ=60)
                                      GTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAT                                                        >  SRR4302533.5035930/1‑94 (MQ=60)
                                      GTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAT                                                        >  SRR4302533.3983716/1‑94 (MQ=60)
                                       TTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATT                                                       >  SRR4302533.6020360/1‑94 (MQ=60)
                                        TCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTA                                                      <  SRR4302533.424462/94‑1 (MQ=60)
                                         CATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                                                     <  SRR4302533.3720/94‑1 (MQ=60)
                                          ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                                                    >  SRR4302533.2945481/1‑94 (MQ=60)
                                            TATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCC                                                  >  SRR4302533.5848582/1‑94 (MQ=60)
                                             ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT                                                 <  SRR4302533.2783372/94‑1 (MQ=60)
                                              TTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTG                                                <  SRR4302533.2821853/94‑1 (MQ=60)
                                               TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGTGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG                                               <  SRR4302533.605859/94‑1 (MQ=60)
                                               TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG                                               >  SRR4302533.495517/1‑94 (MQ=60)
                                                GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG                                              >  SRR4302533.276961/1‑94 (MQ=60)
                                                  CGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTT                                            <  SRR4302533.1845094/94‑1 (MQ=60)
                                                  CGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTT                                            <  SRR4302533.5654203/94‑1 (MQ=60)
                                                   GGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTT                                           >  SRR4302533.4272098/1‑94 (MQ=60)
                                                   GGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTT                                           <  SRR4302533.6252334/94‑1 (MQ=60)
                                                       TTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCG                                       <  SRR4302533.5669721/94‑1 (MQ=60)
                                                       TTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCG                                       <  SRR4302533.2058154/94‑1 (MQ=60)
                                                       TTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCG                                       <  SRR4302533.4722495/94‑1 (MQ=60)
                                                         GCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGC                                     <  SRR4302533.6216465/94‑1 (MQ=60)
                                                             TCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGT                                 <  SRR4302533.3825511/94‑1 (MQ=60)
                                                             TCCTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGT                                 <  SRR4302533.1552048/94‑1 (MQ=60)
                                                               CTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCA                               <  SRR4302533.2500954/94‑1 (MQ=60)
                                                               CTCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCA                               >  SRR4302533.6110179/1‑94 (MQ=60)
                                                                TCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCAT                              <  SRR4302533.3457741/94‑1 (MQ=60)
                                                                TCGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCAT                              <  SRR4302533.678392/94‑1 (MQ=60)
                                                                 CGGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATC                             >  SRR4302533.5047819/1‑94 (MQ=60)
                                                                  GGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            <  SRR4302533.2507680/94‑1 (MQ=60)
                                                                  GGGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCT                            <  SRR4302533.5496064/94‑1 (MQ=60)
                                                                   GGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTG                           <  SRR4302533.3941214/94‑1 (MQ=60)
                                                                   GGAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTG                           <  SRR4302533.6303205/94‑1 (MQ=60)
                                                                    GAGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGC                          <  SRR4302533.3735309/94‑1 (MQ=60)
                                                                     AGTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCC                         <  SRR4302533.4764401/94‑1 (MQ=60)
                                                                      GTACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCG                        <  SRR4302533.4298093/94‑1 (MQ=60)
                                                                       TACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGC                       >  SRR4302533.5238191/1‑94 (MQ=60)
                                                                        ACGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCC                      <  SRR4302533.5868047/94‑1 (MQ=60)
                                                                         CGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCG                     >  SRR4302533.897100/1‑94 (MQ=60)
                                                                         CGGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCG                     <  SRR4302533.4424824/94‑1 (MQ=60)
                                                                          GGTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATATGCCGCCGT                    >  SRR4302533.3283638/1‑94 (MQ=60)
                                                                           GTGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGAT                   >  SRR4302533.4050211/1‑94 (MQ=60)
                                                                            TGTAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATG                  >  SRR4302533.2035831/1‑94 (MQ=60)
                                                                              TAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGAC                <  SRR4302533.1796313/94‑1 (MQ=60)
                                                                              TAATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGAC                <  SRR4302533.3623140/94‑1 (MQ=60)
                                                                               AATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACG               <  SRR4302533.4231819/94‑1 (MQ=60)
                                                                                ATGGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGC              >  SRR4302533.5014833/1‑94 (MQ=60)
                                                                                  GGGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTGGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCAC            <  SRR4302533.3093804/94‑1 (MQ=60)
                                                                                   GGCCTGATGCGGGGATTATTTAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACT           >  SRR4302533.5653963/1‑94 (MQ=60)
                                                                                   GGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACT           <  SRR4302533.4893675/94‑1 (MQ=60)
                                                                                   GGCCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACT           <  SRR4302533.332861/94‑1 (MQ=60)
                                                                                     CCTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTA         >  SRR4302533.3833481/1‑94 (MQ=60)
                                                                                      CTGATGCGGTGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        <  SRR4302533.2723092/94‑1 (MQ=60)
                                                                                      CTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        >  SRR4302533.3222413/1‑94 (MQ=60)
                                                                                      CTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        <  SRR4302533.3347779/94‑1 (MQ=60)
                                                                                      CTGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTAT        <  SRR4302533.1690495/94‑1 (MQ=60)
                                                                                       TGATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATG       <  SRR4302533.5273345/94‑1 (MQ=60)
                                                                                        GATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGG      <  SRR4302533.3467820/94‑1 (MQ=60)
                                                                                         ATGCGGGTATGATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGG     <  SRR4302533.3207084/94‑1 (MQ=60)
                                                                                         ATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGG     >  SRR4302533.1404889/1‑94 (MQ=60)
                                                                                         ATGCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGCTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGG     >  SRR4302533.2041600/1‑94 (MQ=60)
                                                                                           GCGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGAT   >  SRR4302533.616500/1‑94 (MQ=60)
                                                                                            CGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  <  SRR4302533.365917/94‑1 (MQ=60)
                                                                                            |                                                                                             
CACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCGAGTCATCTGCCGCCGATGACGCACTTATGGGATT  >  NC_000913/2370832‑2371017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑