Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,376,791 |
T→C |
G163G (GGA→GGG) |
menD ← |
2‑oxoglutarate decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,376,791 | 0 | T | C | 92.7%
| 400.7
/ 16.1
| 157 | G163G (GGA→GGG) | menD | 2‑oxoglutarate decarboxylase |
| Reads supporting (aligned to +/- strand): ref base T (6/5); new base C (63/77); total (73/84) |
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.16e-01 |
Only 100 of 173 total aligned reads displayed.
TGCCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAA > NC_000913/2376699‑2376878
|
ccaccaGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑cccc < 1:8466060/93‑1 (MQ=255)
caccaGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑Ccccc > 2:316061/1‑93 (MQ=255)
accaGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑cccccc < 1:6163029/93‑1 (MQ=255)
ccaGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑Ccccccc < 2:8500933/93‑1 (MQ=255)
caGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑cccccccc > 1:4599642/1‑93 (MQ=255)
aGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCcaccccc > 1:4957260/1‑92 (MQ=255)
tCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCa < 2:5622628/93‑1 (MQ=255)
tCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCa < 2:7432773/93‑1 (MQ=255)
aCCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGGTGATATGGA‑CCCCCCCCGCATg > 2:2773853/1‑93 (MQ=255)
cccAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGa < 2:5032670/93‑1 (MQ=255)
cccAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGa > 1:2928922/1‑93 (MQ=255)
cccAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑C‑CCCCCCGCATGaa < 2:9705503/93‑1 (MQ=255)
aGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGc > 1:6892913/1‑93 (MQ=255)
aGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGc > 2:209902/1‑93 (MQ=255)
gACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCg > 1:1723619/1‑93 (MQ=255)
cGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTa < 1:6180227/93‑1 (MQ=255)
ccTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTa < 1:162632/92‑1 (MQ=255)
cTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTAcc > 1:9316287/1‑93 (MQ=255)
tGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCg < 1:2569647/93‑1 (MQ=255)
gTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTCCCg > 2:8783191/1‑93 (MQ=255)
ttGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCgag > 1:3731410/1‑93 (MQ=255)
ttGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCgag < 2:602470/93‑1 (MQ=255)
ttGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTGGGTATGGA‑CCCCCCCCGCATGAAGCCTACCgag > 1:3335440/1‑93 (MQ=255)
gCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTACCgaga < 2:7415969/93‑1 (MQ=255)
gCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGagag > 2:6779061/1‑93 (MQ=255)
gCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGagag < 2:4559751/93‑1 (MQ=255)
caacTAAGCCCGGTATCGTCCATTTCGCCATCCAGCGATTCAGCAAACGGGCAGTTGATATCGACCCCCCCCCGCATGAAGCGTACCGAGAGc < 2:5836397/90‑1 (MQ=255)
cAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCg < 1:10024581/93‑1 (MQ=255)
cAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCg > 2:9095818/1‑93 (MQ=255)
cAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCg < 1:9822157/93‑1 (MQ=255)
aGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGt > 1:7129178/1‑93 (MQ=255)
aGCTAACCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCTCCCCGCATGCAGCGTACCCAGAGCGt > 2:1462138/1‑93 (MQ=255)
gCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTg > 2:5442319/1‑93 (MQ=255)
tAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGt < 2:9369021/93‑1 (MQ=255)
tAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGt > 1:228074/1‑93 (MQ=255)
aaGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTACCGAGAGCGTGGt < 2:416962/93‑1 (MQ=255)
aGCCCGGTATCATCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCg < 1:4760780/93‑1 (MQ=255)
gCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGa < 2:8074625/93‑1 (MQ=255)
gCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGa < 2:8632212/93‑1 (MQ=255)
gCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGa < 1:766926/93‑1 (MQ=255)
gCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGa < 1:744889/93‑1 (MQ=255)
ccGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATg < 2:3413102/93‑1 (MQ=255)
gTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTa < 1:1198837/93‑1 (MQ=255)
gTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTa > 1:3067650/1‑93 (MQ=255)
gTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑C‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAg > 1:7587209/1‑93 (MQ=255)
tCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGaa > 2:8032232/1‑93 (MQ=255)
tCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGaa > 1:9425563/1‑93 (MQ=255)
tCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATAGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGaa > 1:836995/1‑93 (MQ=255)
tCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAAcc < 2:4407147/93‑1 (MQ=255)
tCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAAcc > 2:730169/1‑93 (MQ=255)
ccATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAcccg > 1:875435/1‑92 (MQ=255)
aTTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAg > 1:1442094/1‑93 (MQ=255)
aTTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCTCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGc < 1:4122397/93‑1 (MQ=255)
tttCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGcc > 1:3922287/1‑93 (MQ=255)
tttCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGcc < 1:9770964/93‑1 (MQ=255)
tCGCCATGCAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCaa < 2:1183294/93‑1 (MQ=255)
tCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCaa < 2:4318332/93‑1 (MQ=255)
tCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCaa > 2:8348273/1‑93 (MQ=255)
ctACAGGGTTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGc < 2:3637756/92‑1 (MQ=255)
aTACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGc < 1:298262/93‑1 (MQ=255)
aCAGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCg < 2:6942582/93‑1 (MQ=255)
aCAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCgg > 1:4689187/1‑93 (MQ=255)
aCAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCgg > 1:5636242/1‑93 (MQ=255)
cAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCCACGTGCggg > 1:3713970/1‑93 (MQ=255)
cAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCggg < 1:2171655/93‑1 (MQ=255)
cAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCggg < 1:2030301/93‑1 (MQ=255)
aGCGGTTCAGCAAACGGGCAGTTGATATGGACCCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCggg > 1:3038871/1‑93 (MQ=255)
aGCGGTTCAGCAAACGGGCAGTTGATATGGA‑C‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACTAGCCAACGTGCGGGGa > 1:8991051/1‑93 (MQ=255)
ctgTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCACCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGat < 1:1919279/91‑1 (MQ=255)
ggTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGata < 1:7324564/93‑1 (MQ=255)
gTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGatat > 2:3867449/1‑93 (MQ=255)
gTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGatat > 2:2391504/1‑93 (MQ=255)
gTTCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGatat > 2:3742449/1‑93 (MQ=255)
tCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGAGGATATcc > 1:3480999/1‑93 (MQ=255)
tCAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATcc < 2:9319802/93‑1 (MQ=255)
cAGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCt > 1:8515957/1‑93 (MQ=255)
aGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACGAGCCAACGTGCGGGGATATCCTg > 2:7233941/1‑93 (MQ=255)
aGCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTg < 2:2314877/93‑1 (MQ=255)
gCAAACGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTgg > 1:7841400/1‑93 (MQ=255)
aaaCGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGt < 2:6595962/93‑1 (MQ=255)
aaaCGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGt < 1:8291691/93‑1 (MQ=255)
aCGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCg < 1:2159575/93‑1 (MQ=255)
aCGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGGAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCg > 1:527289/1‑93 (MQ=255)
cGGGCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCgg > 1:5314888/1‑93 (MQ=255)
ggCAGTTGATATGGC‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGgc < 2:9797338/93‑1 (MQ=255)
ggCAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGgc > 1:6301716/1‑93 (MQ=255)
gCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGgcg > 2:6946254/1‑93 (MQ=255)
cAGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGgcgc < 2:1877645/93‑1 (MQ=255)
cAGTGGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGgcgc < 2:7677290/93‑1 (MQ=255)
aGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGcgcg > 1:3105747/1‑93 (MQ=255)
aGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGcgcg > 1:6460806/1‑93 (MQ=255)
aGTTGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGcgcg < 1:5443048/93‑1 (MQ=255)
gTTGATATGGA‑CCCCCCCCGCATGAAGCGTCCCGAGAGCGCGGTCGATGGTAGAAACCAGCCCACGTGCGGGGATATCCTGGGTCGGGCGCgg > 1:2700544/1‑93 (MQ=255)
ttGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGc < 1:6684444/93‑1 (MQ=255)
ttGATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGc < 2:5269250/93‑1 (MQ=255)
gATATGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCaa < 1:5134082/93‑1 (MQ=255)
atatGGA‑C‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATg > 1:2722506/1‑93 (MQ=255)
tatGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATg > 1:6798261/1‑93 (MQ=255)
tatGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATg > 2:8869013/1‑93 (MQ=255)
tGGA‑CCCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGaa > 1:6739007/1‑93 (MQ=255)
|
TGCCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATATGGA‑CTCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAA > NC_000913/2376699‑2376878
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGCCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACTG > NC_000913/2376698‑2376884
|
CTGCCCCCAGTCATCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCTATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑C < SRR4302540.3001158/94‑1 (MQ=60)
CTGCCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑C < SRR4302540.8635442/94‑1 (MQ=60)
CCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCC < SRR4302540.8564359/94‑1 (MQ=60)
ACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCC < SRR4302540.6231705/94‑1 (MQ=60)
ACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCC < SRR4302540.3949918/94‑1 (MQ=60)
CCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCC > SRR4302540.4649081/1‑94 (MQ=60)
ACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑CGCCCCCCCGCATG > SRR4302540.9485430/1‑94 (MQ=60)
ACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGA > SRR4302540.2961041/1‑94 (MQ=60)
CCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAA < SRR4302540.8677572/94‑1 (MQ=60)
CAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGC > SRR4302540.6969391/1‑94 (MQ=60)
AGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCG > SRR4302540.1742219/1‑94 (MQ=60)
AGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCG > SRR4302540.6079150/1‑94 (MQ=60)
AGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑‑CCCCCCGCATGAAGCGT > SRR4302540.7862636/1‑94 (MQ=60)
ACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTA < SRR4302540.556784/94‑1 (MQ=60)
CGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTAC < SRR4302540.6249069/94‑1 (MQ=60)
CGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑‑CCCCCCGCATGAAGCGTACC < SRR4302540.6911655/94‑1 (MQ=60)
GCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACC > SRR4302540.9427466/1‑94 (MQ=60)
CCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTAC < SRR4302540.164263/94‑1 (MQ=60)
CTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACC < SRR4302540.2466463/94‑1 (MQ=60)
TGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGA < SRR4302540.2597356/94‑1 (MQ=60)
GTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAG > SRR4302540.3772116/1‑94 (MQ=60)
GTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTGGGTAT‑GGA‑C‑CCCCCCCGCATGAAGCCTACCGAG > SRR4302540.3372070/1‑94 (MQ=60)
TGCGAGCTAAGCCGGGTATCGTCCATTTCCCCATCCAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAG < SRR4302540.6328100/94‑1 (MQ=60)
CAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGT < SRR4302540.10141229/94‑1 (MQ=60)
CAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGT > SRR4302540.7208590/1‑94 (MQ=60)
CAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGT < SRR4302540.9937074/94‑1 (MQ=60)
AGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTG < SRR4302540.7297768/94‑1 (MQ=60)
CTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGT > SRR4302540.230279/1‑94 (MQ=60)
CTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGC > SRR4302540.9229377/1‑94 (MQ=60)
AGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCG < SRR4302540.2246819/94‑1 (MQ=60)
AGCCCGGTATCATCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGA < SRR4302540.4811585/94‑1 (MQ=60)
GCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGAT < SRR4302540.752824/94‑1 (MQ=60)
GCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGAT < SRR4302540.7583507/94‑1 (MQ=60)
GCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGAT < SRR4302540.775095/94‑1 (MQ=60)
GCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGAT < SRR4302540.8601330/94‑1 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGT > SRR4302540.2050690/1‑94 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCcccacgataccaaacgggagcggggggcgtgta > SRR4302540.1903404/1‑61 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTA > SRR4302540.3101304/1‑94 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTA > SRR4302540.3101305/1‑94 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTA > SRR4302540.3101303/1‑94 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTA > SRR4302540.4220498/1‑94 (MQ=60)
GGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAG > SRR4302540.7672415/1‑94 (MQ=60)
GTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGACGCGTACCGAGAGCGTGGTCGATGGTAG > SRR4302540.6843093/1‑94 (MQ=60)
GTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAG < SRR4302540.1211168/94‑1 (MQ=60)
ATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAA > SRR4302540.9537561/1‑94 (MQ=60)
ATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑AGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAA > SRR4302540.845884/1‑94 (MQ=60)
GTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCTCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACA > SRR4302540.1211181/1‑94 (MQ=60)
TCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAcccg > SRR4302540.884727/1‑90 (MQ=60)
TCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCA < SRR4302540.9735573/94‑1 (MQ=60)
CATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAG > SRR4302540.1457751/1‑94 (MQ=60)
ATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCTCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCC < SRR4302540.4166919/94‑1 (MQ=60)
ATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCC > SRR4302540.3003512/1‑94 (MQ=60)
ATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCC > SRR4302540.3964738/1‑94 (MQ=60)
TTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCA < SRR4302540.4997811/94‑1 (MQ=60)
TTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCA < SRR4302540.9885523/94‑1 (MQ=60)
TCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAAC < SRR4302540.3765972/94‑1 (MQ=60)
GCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGT > SRR4302540.5424965/1‑94 (MQ=60)
CATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGC > SRR4302540.8399022/1‑94 (MQ=60)
ATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCG < SRR4302540.301212/94‑1 (MQ=60)
TACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGG > SRR4302540.5698270/1‑94 (MQ=60)
TACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGG > SRR4302540.4739336/1‑94 (MQ=60)
ACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCCACGTGCGGG > SRR4302540.3754499/1‑94 (MQ=60)
CAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGG > SRR4302540.3072221/1‑94 (MQ=60)
CAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGG < SRR4302540.2052216/94‑1 (MQ=60)
CAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGG < SRR4302540.2195071/94‑1 (MQ=60)
CAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACTAGCCAACGTGCGGGGA > SRR4302540.9098737/1‑94 (MQ=60)
AGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGA > SRR4302540.8225037/1‑94 (MQ=60)
GCGGTTCAGCAAACGGGCAGTTGATAT‑GGG‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGAT < SRR4302540.6642046/94‑1 (MQ=60)
GCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGAT < SRR4302540.6642047/94‑1 (MQ=60)
CTGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCACCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATA < SRR4302540.1940220/94‑1 (MQ=60)
CGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGCGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATA > SRR4302540.2167959/1‑94 (MQ=60)
CGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATA > SRR4302540.1579581/1‑94 (MQ=60)
GTTTCAGCAAACGGGCAGTTGATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATA < SRR4302540.3744731/94‑1 (MQ=60)
GGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATAT < SRR4302540.2822673/94‑1 (MQ=60)
GGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATAT < SRR4302540.7406357/94‑1 (MQ=60)
TTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGAGGATATCC > SRR4302540.3518897/1‑94 (MQ=60)
TCAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCT > SRR4302540.8614925/1‑94 (MQ=60)
CAGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCCACGTGCGGGGATATCCTG > SRR4302540.1936388/1‑94 (MQ=60)
AGCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGG > SRR4302540.7933028/1‑94 (MQ=60)
GCAAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGG < SRR4302540.5115852/94‑1 (MQ=60)
AAACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTC < SRR4302540.8387980/94‑1 (MQ=60)
AACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGGAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCG > SRR4302540.532993/1‑94 (MQ=60)
ACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGG < SRR4302540.2182829/94‑1 (MQ=60)
ACGGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGG > SRR4302540.5373085/1‑94 (MQ=60)
GGGCAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGC > SRR4302540.6371896/1‑94 (MQ=60)
GCAGTTGATATGGGC‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCG < SRR4302540.2634366/94‑1 (MQ=60)
CAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCG > SRR4302540.3139744/1‑94 (MQ=60)
CAGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCG > SRR4302540.6532715/1‑94 (MQ=60)
AGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTCCCGAGAGCGCGGTCGATGGTAGAAACCAGCCCACGTGCGGGGATATCCTGGGTCGGGCGCGG > SRR4302540.2729688/1‑94 (MQ=60)
AGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGG < SRR4302540.5502940/94‑1 (MQ=60)
AGTTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGG > SRR4302540.6521071/1‑94 (MQ=60)
TTGATAT‑GGA‑C‑CCGCCCCGCATGAAGCGTACCGAGAGCGTGGTTGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCA < SRR4302540.4716481/94‑1 (MQ=60)
TTGATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCA < SRR4302540.6758263/94‑1 (MQ=60)
GATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAAT < SRR4302540.5243926/94‑1 (MQ=60)
GATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAAT < SRR4302540.5189686/94‑1 (MQ=60)
GATAT‑GGA‑C‑‑CCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATG > SRR4302540.2751862/1‑94 (MQ=60)
ATAT‑GGACC‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAAT < SRR4302540.7425778/94‑1 (MQ=60)
ATAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATG > SRR4302540.6873464/1‑94 (MQ=60)
TAT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGA > SRR4302540.3214517/1‑94 (MQ=60)
AT‑GGA‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAA > SRR4302540.6813449/1‑94 (MQ=60)
A‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCTAGGGGAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATAC < SRR4302540.5494687/94‑1 (MQ=60)
A‑C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATAC < SRR4302540.1545903/94‑1 (MQ=60)
C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACT < SRR4302540.2442686/94‑1 (MQ=60)
C‑CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACT < SRR4302540.5372866/94‑1 (MQ=60)
CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACTG < SRR4302540.2735633/94‑1 (MQ=60)
CCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACTG > SRR4302540.6988703/1‑94 (MQ=60)
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CTGCCACCAGTCACCCAGACGCTGTTGCCAGCTAAGCCCGGTATCGTCCATTTCGCCATACAGCGGTTCAGCAAACGGGCAGTTGATAT‑GGA‑C‑TCCCCCCGCATGAAGCGTACCGAGAGCGTGGTCGATGGTAGAAACCAGCCAACGTGCGGGGATATCCTGGGTCGGGCGCGGCAATGAAATACTG > NC_000913/2376698‑2376884
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
