Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	2,419,010	(C)_6→9	coding (370/648 nt)	yfcG →	putative S‑transferase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2419004	6 (0.020)	231 (0.620) +CCC	112/166	0.7	97.5%	coding (364/648 nt)	yfcG	putative S‑transferase
*	?	NC_000913	2419005 =	6 (0.020)	231 (0.620) +CCC	112/166	0.7	97.5%	coding (365/648 nt)	yfcG	putative S‑transferase

Only 100 of 247 total aligned reads displayed.

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096

|||

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC                                                                                                >  1:4242190/1‑93

 CGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTATGCGGACTGGGGCCGATGCTTTGGCAAAATCATCATTTTAATCACGCAGCC                                                                                               >  1:5596786/1‑93

   TGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC                                                                                             >  2:6380368/1‑93

   TGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC                                                                                             >  2:8567847/1‑93

   TGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC                                                                                             >  2:3224653/1‑93

        GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCa                                                                                        >  2:6704370/1‑92

         CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCaa                                                                                       >  1:1627267/1‑91

          GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAA                                                                                      <  1:1372359/93‑1

            CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACC                                                                                   >  1:7093759/1‑93

            CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACC                                                                                   >  1:3268071/1‑93

             GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCA                                                                                  >  1:7647842/1‑93

              CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCAT                                                                                 <  1:10002502/93‑1

               CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATT                                                                                <  2:1472591/93‑1

                ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC                                                                               >  1:4098865/1‑93

                ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC                                                                               >  2:1191226/1‑93

                 CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTac                                                                              >  1:7474916/1‑91

                 CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATAATCATTTTAATCACGCAGCCCCCCCCCAAACCATTC                                                                               <  2:433191/93‑1

                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCT                                                                             <  2:7718305/93‑1

                   TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCT                                                                             <  1:2980000/93‑1

                   TTACAGAGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT                                                                            >  2:4505223/1‑93

                    TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA                                                                           <  1:6512563/93‑1

                    TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA                                                                           >  2:3459429/1‑93

                    TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA                                                                           <  2:4267145/93‑1

                    TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA                                                                           <  1:5412620/93‑1

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  2:8929043/93‑1

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  2:4962783/93‑1

                       AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACG                                                                         >  1:9917246/1‑93

                        GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCT                                                                       <  2:8596659/93‑1

                         TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTA                                                                      <  2:4583283/93‑1

                         TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTA                                                                      >  2:6910988/1‑93

                          GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTAT                                                                     <  1:6295405/93‑1

                          GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTAT                                                                     <  1:6679430/93‑1

                          GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTAT                                                                     <  1:794246/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAACTCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  1:1557232/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  1:5236352/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:7781084/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:100216/93‑1

                             TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGA                                                                  <  2:5628151/93‑1

                               TTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTTAAC                                                                >  2:2632026/1‑93

                               TTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAAC                                                                <  2:2919660/93‑1

                                  TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTT                                                             <  1:3777947/93‑1

                                  TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTT                                                             <  1:1303954/93‑1

                                   GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGGCCCCCCCCAAACCATTCCTTACGCTATTAAACGTT                                                             >  1:108803/1‑93

                                    GCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTAT                                                           <  2:7483050/93‑1

                                     CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATC                                                          <  1:7943727/93‑1

                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                         >  2:2713048/1‑93

                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        >  2:3062386/1‑93

                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        >  1:4540038/1‑93

                                        GTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                       >  1:6396024/1‑93

                                        GTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                       >  2:1561367/1‑93

                                         gAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT                                                      <  1:782096/92‑1

                                          AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                     <  2:3785403/93‑1

                                            gctGACTGGGCCCGATTCTTGGGCAAAATCATCATCTTAAGCACTCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGA                                                   <  1:6597545/90‑1

                                            GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGA                                                   <  2:9669168/93‑1

                                               GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                >  2:78053/1‑93

                                                acgGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACCCA‑CCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                               <  2:2849586/90‑1

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTC                                              >  2:952051/1‑93

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             <  1:4236917/93‑1

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             >  2:8160582/1‑93

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             >  2:1793715/1‑93

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             >  2:9294506/1‑93

                                                   GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                            <  1:1100943/93‑1

                                                    GGGCCGCTGCTTGGGCAACATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGACCGTTATCAGGTTGAAACTCAGC                                           <  1:8922710/93‑1

                                                    GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                           >  2:9706766/1‑93

                                                        CGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                       >  1:8321443/1‑93

                                                        CGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                       >  1:6173123/1‑93

                                                         GATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                      <  1:4595645/93‑1

                                                         GATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                      >  1:5806754/1‑93

                                                          ATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                     <  2:1650422/93‑1

                                                           TGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                    >  1:2521248/1‑93

                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   >  1:8643056/1‑93

                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   >  1:8748486/1‑93

                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   <  2:8213086/93‑1

                                                             CTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                  <  1:2813410/93‑1

                                                             CTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                  >  1:3669628/1‑93

                                                              TTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA                                 >  1:727022/1‑93

                                                              TTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA                                 <  1:8190212/93‑1

                                                               TGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                <  1:5056886/93‑1

                                                               TGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                >  2:8954482/1‑93

                                                                  GCAAAATCATCATTTTAATCACGC‑GGCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA                             <  1:6259562/93‑1

                                                                   CAAAATCATCATTTTAATCCCGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCGGGTTGAAACTCAGCGTCTTTACCGTGTAC                            <  1:8986465/93‑1

                                                                    AAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                           <  2:7647841/93‑1

                                                                     AAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG                          <  2:3710136/93‑1

                                                                      AATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                         <  2:5286017/93‑1

                                                                       ATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTTAAACTCAGCGTCTTTACCATGTACTGAg                        >  2:2498761/1‑92

                                                                        TCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc                       >  2:3936061/1‑91

                                                                        TCATCATGTGAAGCACGCTG‑CTCCCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc                       <  2:1764628/93‑3

                                                                         CATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc                       >  2:1939886/1‑91

                                                                         CATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA                      >  2:1104991/1‑93

                                                                         CATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA                      <  1:1599791/93‑1

                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     >  2:1239682/1‑93

                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     <  2:6230481/93‑1

                                                                             ATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGtg                  <  1:7747574/93‑3

                                                                              TTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                 >  1:9552457/1‑93

                                                                                  AATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG             >  1:2157497/1‑93

                                                                                  AATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG             >  2:5847992/1‑93

                                                                                  AATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG             <  1:4917795/93‑1

                                                                                       CGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC        <  2:3408404/93‑1

                                                                                             CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCC   <  2:2305661/93‑1

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  >  1:9620467/1‑93

|||

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC                                                                                               >  SRR4302540.9781978/1‑94 (MQ=60)

   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcca                                                                                            <  SRR4302540.9665453/94‑4 (MQ=60)

   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcca                                                                                            <  SRR4302540.8792488/94‑4 (MQ=60)

    GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaa                                                                                           >  SRR4302540.1645091/1‑90 (MQ=60)

     CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaac                                                                                          >  SRR4302540.518567/1‑89 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           <  SRR4302540.2235533/94‑1 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           <  SRR4302540.2183131/94‑1 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           <  SRR4302540.1386903/94‑1 (MQ=60)

       CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC                                                                                          >  SRR4302540.3303738/1‑94 (MQ=60)

       CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC                                                                                          >  SRR4302540.7172700/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA                                                                                         >  SRR4302540.7733933/1‑94 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT                                                                                        <  SRR4302540.3497818/94‑1 (MQ=60)

          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATT                                                                                       <  SRR4302540.5148771/94‑1 (MQ=60)

          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATT                                                                                       <  SRR4302540.10119018/94‑1 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      >  SRR4302540.4143082/1‑94 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      <  SRR4302540.1100054/94‑1 (MQ=60)

            TCATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC                                                                                     <  SRR4302540.2745926/94‑1 (MQ=60)

            ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC                                                                                     >  SRR4302540.4593163/1‑94 (MQ=60)

            ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC                                                                                     <  SRR4302540.4848459/94‑1 (MQ=60)

            ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTAC                                                                                     >  SRR4302540.7558330/1‑94 (MQ=60)

             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCACAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCT                                                                                    >  SRR4302540.9970617/1‑94 (MQ=60)

             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCT                                                                                    <  SRR4302540.9382956/94‑1 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTA                                                                                  >  SRR4302540.4136022/1‑94 (MQ=60)

               TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTT                                                                                   <  SRR4302540.3012911/94‑1 (MQ=60)

               TTACAGTGGTTAGTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTAC                                                                                 <  SRR4302540.7287425/94‑1 (MQ=60)

                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 <  SRR4302540.5472130/94‑1 (MQ=60)

                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 <  SRR4302540.6584909/94‑1 (MQ=60)

                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACG                                                                                <  SRR4302540.9185263/94‑1 (MQ=60)

                  caggtGTTATTCTGGCAGGTAGGCGGAATGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC                                                                               <  SRR4302540.7876808/89‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACG                                                                                >  SRR4302540.10033064/1‑94 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC                                                                               >  SRR4302540.6258248/1‑94 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC                                                                               <  SRR4302540.1595693/94‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC                                                                               <  SRR4302540.7876807/94‑1 (MQ=60)

                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT                                                                              <  SRR4302540.126055/94‑1 (MQ=60)

                    GTGGATATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCTAAATCAACATTTTAATCATGCAG‑‑‑CCCCCCccaaaccttttcctactttt                                                                           >  SRR4302540.9028806/1‑74 (MQ=60)

                      GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT                                                                           <  SRR4302540.6365498/94‑1 (MQ=60)

                      GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT                                                                           <  SRR4302540.6753211/94‑1 (MQ=60)

                      GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT                                                                           <  SRR4302540.802681/94‑1 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGGCTTGGGCCGATGCTTGGGCAAAATCCTCATTTTAATCCCGCAGCCCCCCCCCAAACCATTCCTTACGCTATT                                                                           <  SRR4302540.6365499/94‑1 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAACTCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG                                                                          <  SRR4302540.1574351/94‑1 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG                                                                          >  SRR4302540.5568164/1‑94 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG                                                                          <  SRR4302540.5293473/94‑1 (MQ=60)

                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAA                                                                        <  SRR4302540.6822498/94‑1 (MQ=60)

                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302540.4945642/94‑1 (MQ=60)

                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302540.8955930/94‑1 (MQ=60)

                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302540.7556853/94‑1 (MQ=60)

                            TCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACG                                                                      <  SRR4302540.5711232/94‑1 (MQ=60)

                            TCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGT                                                                     >  SRR4302540.9061727/1‑94 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTCAACGTT                                                                    >  SRR4302540.7261407/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGGCCCCCCCCAAACCATTCCTTACGCTATTAAACGTT                                                                    >  SRR4302540.109970/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAATCATTCCTTACGCTATTTAACGGTA                                                                   >  SRR4302540.8259114/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302540.1317484/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   >  SRR4302540.1622400/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302540.1357239/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302540.3819162/94‑1 (MQ=60)

                               GGCAGGTAGCCGAACTGGGGCCGATTTTTGGGAAAAACCATCATTTTAACCCCCCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302540.6024381/94‑1 (MQ=28)

                                 GAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302540.8971007/94‑1 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302540.8036317/94‑1 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                >  SRR4302540.6568428/1‑94 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302540.3713012/94‑1 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302540.8036318/94‑1 (MQ=60)

                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               >  SRR4302540.4589174/1‑94 (MQ=60)

                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                              >  SRR4302540.6467221/1‑94 (MQ=60)

                                    GTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT                                                             <  SRR4302540.7773197/94‑1 (MQ=60)

                                     GAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                            <  SRR4302540.790423/94‑1 (MQ=60)

                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           >  SRR4302540.7969221/1‑94 (MQ=60)

                                        GCTGACTGGGCCCGATTCTTGGGCAAAATCATCATCTTAAGCACTCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         <  SRR4302540.6670602/94‑1 (MQ=60)

                                        GCGGACTGGGGCCGATGCTCGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         <  SRR4302540.1232453/94‑1 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302540.1444049/1‑94 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302540.5565867/1‑94 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302540.10079548/1‑94 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       <  SRR4302540.634732/94‑1 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       <  SRR4302540.4180438/94‑1 (MQ=60)

                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGCAACTC                                                     >  SRR4302540.7408581/1‑94 (MQ=60)

                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                    >  SRR4302540.3906419/1‑94 (MQ=60)

                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                                   <  SRR4302540.4283022/94‑1 (MQ=60)

                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                                   <  SRR4302540.4283282/94‑1 (MQ=60)

                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                                  <  SRR4302540.1112285/94‑1 (MQ=60)

                                                GGGCCGCTGCTTGGGCAACATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGACCGTTATCAGGTTGAAACTCAGCG                                                 <  SRR4302540.9026246/94‑1 (MQ=60)

                                                  GCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC                                               <  SRR4302540.6460776/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              <  SRR4302540.6694634/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              >  SRR4302540.8418035/1‑94 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              >  SRR4302540.6241905/1‑94 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcccaaccatttccttagctaatggaaggtattcggtttaaactcaaagtat                                            >  SRR4302540.3938563/1‑43 (MQ=60)

                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302540.5870917/1‑94 (MQ=60)

                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302540.8034929/1‑94 (MQ=60)

                                                     GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTacggcttttgaacgtaatcgggttgaacttcggcgtctta                                            >  SRR4302540.6093460/1‑54 (MQ=60)

                                                     GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                            <  SRR4302540.4645074/94‑1 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302540.2891883/1‑94 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302540.8380346/1‑94 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302540.2548473/1‑94 (MQ=60)

                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302540.8850006/1‑94 (MQ=60)

                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302540.8743455/1‑94 (MQ=60)

                                                        GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                         >  SRR4302540.152139/1‑94 (MQ=60)

                                                        GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                         >  SRR4302540.3709773/1‑94 (MQ=60)

                                                        GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                         <  SRR4302540.5942508/94‑1 (MQ=60)

                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA                                        <  SRR4302540.2843796/94‑1 (MQ=60)

                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA                                        >  SRR4302540.734812/1‑94 (MQ=60)

                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302540.3156547/94‑1 (MQ=60)

                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302540.8285382/94‑1 (MQ=60)

                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                                      <  SRR4302540.5111556/94‑1 (MQ=60)

                                                            GGTCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA                                    >  SRR4302540.1503763/1‑94 (MQ=60)

                                                             GGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA                                    <  SRR4302540.4355176/94‑1 (MQ=60)

                                                              GCAAAATCATCATTTTAATCACGCGGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC                                   <  SRR4302540.6329205/94‑1 (MQ=60)

                                                               CAAAATCATCATTTTAATCCCGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCGGGTTGAAACTCAGCGTCTTTACCGTGTACT                                  <  SRR4302540.9093849/94‑1 (MQ=60)

                                                                AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG                                 >  SRR4302540.5381348/1‑94 (MQ=60)

                                                                  AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               <  SRR4302540.855340/94‑1 (MQ=60)

                                                                  AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               >  SRR4302540.7620405/1‑94 (MQ=60)

                                                                   ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCACCGTCTTTACCATGTACTGAGC                              >  SRR4302540.1051268/1‑94 (MQ=60)

                                                                   ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACCTTATCAGGTTGAAACTCACCGTCTTTACAATGTAttgaca                              >  SRR4302540.2980206/1‑88 (MQ=60)

                                                                    TCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC                              >  SRR4302540.4340413/1‑94 (MQ=60)

                                                                     CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            >  SRR4302540.1886332/1‑94 (MQ=60)

                                                                     CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            <  SRR4302540.1617292/94‑1 (MQ=60)

                                                                         ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGG                        <  SRR4302540.7838034/94‑1 (MQ=60)

                                                                         ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                        <  SRR4302540.7838033/94‑1 (MQ=60)

                                                                         ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                        >  SRR4302540.9665445/1‑94 (MQ=60)

                                                                         ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                        <  SRR4302540.5890037/94‑1 (MQ=60)

                                                                           TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                      <  SRR4302540.3406155/94‑1 (MQ=60)

                                                                           TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                      <  SRR4302540.841114/94‑1 (MQ=60)

                                                                           TTTAATCACGCAGCC‑CCCCCCAAAACATTCCTTAAGCTATTGAACGTTTTCAGGGTGAAACTTAACGTCTTTAACATGTACTGAGCAAGCCGCT                      >  SRR4302540.5773247/1‑94 (MQ=34)

                                                                             TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTGG                    <  SRR4302540.8122001/94‑1 (MQ=60)

                                                                             TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG                    >  SRR4302540.2180723/1‑94 (MQ=60)

                                                                              AATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGCCTTTACCGTGTATTGAGCAAGCGGCTGG                    >  SRR4302540.3280815/1‑94 (MQ=60)

                                                                              AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   <  SRR4302540.6621988/94‑1 (MQ=60)

                                                                              AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   <  SRR4302540.4970758/94‑1 (MQ=60)

                                                                                  ACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC               <  SRR4302540.6539340/94‑1 (MQ=60)

                                                                                   CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT              <  SRR4302540.6675830/94‑1 (MQ=60)

                                                                                   CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACC              >  SRR4302540.2026126/1‑94 (MQ=60)

                                                                                     cagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTC             <  SRR4302540.1639036/88‑1 (MQ=60)

                                                                                      cagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG            >  SRR4302540.4974661/6‑94 (MQ=60)

                                                                                       agccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCCC           >  SRR4302540.5163131/5‑94 (MQ=60)

                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        >  SRR4302540.482317/1‑94 (MQ=60)

                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302540.3948276/94‑1 (MQ=60)

                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        >  SRR4302540.4437709/1‑94 (MQ=60)

                                                                                         ccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC         >  SRR4302540.9733866/3‑94 (MQ=60)

                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302540.9756446/94‑1 (MQ=60)

                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302540.2652287/94‑1 (MQ=60)

                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       >  SRR4302540.4495924/1‑94 (MQ=60)

                                                                                              CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAATCTCAGCGTCTTTACCATGTAATGAGCAAGCGGCTAGAAAACTggacctggcg    >  SRR4302540.4850848/1‑84 (MQ=60)

                                                                                              CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302540.8869900/94‑1 (MQ=60)

                                                                                              CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    >  SRR4302540.609969/1‑94 (MQ=60)

                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCGTGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302540.6369017/1‑94 (MQ=60)

                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302540.7051877/1‑94 (MQ=60)

                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  <  SRR4302540.8913272/94‑1 (MQ=60)

                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  <  SRR4302540.8467484/94‑1 (MQ=60)

                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  <  SRR4302540.2454463/94‑1 (MQ=60)

                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302540.5490742/1‑94 (MQ=60)

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`