Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
2,419,010 |
(C)6→9 |
coding (370/648 nt) |
yfcG → |
putative S‑transferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2419004 | 2 (0.010) | 197 (0.830)
+CCC |
92/166 |
1.6 |
99.0% |
coding (364/648 nt) |
yfcG |
putative S‑transferase |
| ? | NC_000913 |
2419005 = |
2 (0.010) | coding (365/648 nt) |
yfcG |
putative S‑transferase |
Only 100 of 214 total aligned reads displayed.
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2418913‑2419004
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC > NC_000913/2419005‑2419096
|||
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC < 2:5972934/93‑1
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC < 1:2758417/93‑1
GTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCC < 1:791581/93‑1
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC < 1:3236453/93‑1
AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC < 1:826455/93‑1
AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC > 2:5655029/1‑93
AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC > 1:5422008/1‑93
GCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCC < 1:1477856/93‑1
GCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCC < 2:2284520/93‑1
CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCaa > 2:5895259/1‑91
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAAc > 1:846673/1‑92
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAAc > 1:1753376/1‑92
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAAc < 2:410888/93‑2
GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCA > 1:2299419/1‑93
CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCAT > 2:3038718/1‑93
CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCAT > 1:5924912/1‑93
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC > 2:3721723/1‑93
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC > 1:2359022/1‑93
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC > 1:4679424/1‑93
CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCC < 2:2448404/93‑1
CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCC < 2:4336021/93‑1
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT < 1:1041018/93‑1
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT > 2:4017422/1‑93
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT > 1:5027478/1‑93
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT > 2:925858/1‑93
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA < 1:3691951/93‑1
AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGC > 2:194293/1‑93
GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCT > 1:4820351/1‑93
TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTA > 1:6105098/1‑93
GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT > 1:3098274/1‑93
TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTG < 1:155974/93‑1
TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGA < 1:4862416/93‑1
TTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAAC > 2:4896087/1‑93
TCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACG > 1:202919/1‑93
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTT < 1:5629612/93‑1
AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA > 2:2888777/1‑93
GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG > 2:132892/1‑93
GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG > 2:3135672/1‑93
TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT < 1:4478616/93‑1
TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT < 2:5721802/93‑1
TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT < 1:397357/93‑1
AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT < 2:5059500/93‑1
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > 1:5778020/1‑93
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC < 2:4796749/93‑1
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > 1:4242996/1‑93
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > 1:3503943/1‑93
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > 2:4216488/1‑93
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC < 1:936993/93‑1
CTGGGGCCTATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTC > 2:6127755/1‑93
CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTC < 2:5283964/93‑1
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA > 2:3264323/1‑93
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA < 2:4782312/93‑1
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA > 1:1390923/1‑93
GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG < 1:3616578/93‑1
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC < 1:2502182/93‑1
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC > 2:2599158/1‑93
CGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT > 1:5646747/1‑93
CGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT < 2:6060427/93‑1
ATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT > 2:1156297/1‑93
GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC > 1:1810233/1‑93
TTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA > 2:4590266/1‑93
TGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT > 2:2425818/1‑93
GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG < 2:5486454/93‑1
GGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTTCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGGCTTTACCATGT > 2:2482107/1‑93
GGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCCATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT > 2:4887175/1‑93
GCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA < 1:2095441/93‑1
CAAAATCATCATTTTAATCACGCAG‑CTCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC < 2:2534196/93‑1
CAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC < 2:1213469/93‑1
AAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT < 2:1962849/93‑1
AAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT < 2:3456368/93‑1
AAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG < 2:2867998/93‑1
TCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAgc > 1:1031214/1‑91
TCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc > 1:4994482/1‑91
TCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAga > 1:5092862/1‑91
CATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA > 2:4612638/1‑93
ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgcca > 1:1314879/1‑89
ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA > 2:4501810/1‑93
TCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG > 1:6234563/1‑93
TCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG > 2:5610792/1‑93
CATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC < 1:1678016/93‑1
CATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC > 1:1230030/1‑93
CATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCACGTACTGAGCAAGC < 2:5171857/93‑1
ATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG < 1:2451589/93‑1
TTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGAGTCTTTACCATGTACTGAGCAAGCGGC > 1:2648143/1‑93
TTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < 1:3018484/93‑1
TTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < 1:5863144/93‑1
TTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < 1:904157/93‑1
TTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < 1:3823470/93‑1
AATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG > 2:835233/1‑93
AATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG < 2:297225/93‑1
ATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA > 1:259677/1‑93
CGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC < 2:4865643/93‑1
CGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC < 1:672642/93‑1
gcagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT > 2:437995/5‑93
agCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG < 1:5265638/91‑1
gCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGC < 1:1118577/92‑1
gCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGC > 2:375679/2‑93
CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCGTGTACTGAGCAAGCGGCTGGAAAACTCGCC < 2:2141783/93‑1
CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTTCCATGTACTGAGCAAGCGGCTGGAAAACCCGCCC < 2:1433095/93‑1
CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC < 1:1851261/93‑1
|||
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2418913‑2419004
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC > NC_000913/2419005‑2419096
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG > NC_000913/2418917‑2419103
|
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC < SRR4302533.3256397/94‑1 (MQ=60)
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC > SRR4302533.5454633/1‑94 (MQ=60)
AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCC < SRR4302533.831300/94‑1 (MQ=60)
GCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcc < SRR4302533.1486785/94‑3 (MQ=60)
cccccCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaaa < SRR4302533.3399887/89‑6 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC > SRR4302533.851629/1‑94 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC > SRR4302533.1764056/1‑94 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC > SRR4302533.618468/1‑94 (MQ=60)
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC > SRR4302533.901444/1‑94 (MQ=60)
CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA > SRR4302533.2313674/1‑94 (MQ=60)
CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA > SRR4302533.2163221/1‑94 (MQ=60)
GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT > SRR4302533.5096551/1‑94 (MQ=60)
GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT > SRR4302533.5960731/1‑94 (MQ=60)
GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT > SRR4302533.1862257/1‑94 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC > SRR4302533.403763/1‑94 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC > SRR4302533.2373601/1‑94 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC > SRR4302533.4707785/1‑94 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC < SRR4302533.1277067/94‑1 (MQ=60)
ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTT > SRR4302533.5057921/1‑94 (MQ=60)
ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTT < SRR4302533.80057/94‑1 (MQ=60)
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTA < SRR4302533.1047138/94‑1 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC > SRR4302533.3671532/1‑94 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC < SRR4302533.3714635/94‑1 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC > SRR4302533.3637120/1‑94 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC < SRR4302533.5303484/94‑1 (MQ=60)
ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACG < SRR4302533.2322292/94‑1 (MQ=60)
AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT < SRR4302533.3828856/94‑1 (MQ=60)
AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT > SRR4302533.4849560/1‑94 (MQ=60)
AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT < SRR4302533.5160355/94‑1 (MQ=60)
GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTA > SRR4302533.6141965/1‑94 (MQ=60)
GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT > SRR4302533.5804716/1‑94 (MQ=60)
GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT > SRR4302533.3117322/1‑94 (MQ=60)
GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG < SRR4302533.1351521/94‑1 (MQ=60)
TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGA < SRR4302533.156968/94‑1 (MQ=60)
TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGA < SRR4302533.5119336/94‑1 (MQ=60)
TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAA < SRR4302533.4891887/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302533.2500002/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302533.833394/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302533.3080836/94‑1 (MQ=60)
TTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACG > SRR4302533.204209/1‑94 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302533.5663656/94‑1 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302533.4361152/94‑1 (MQ=60)
GCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATC < SRR4302533.1195835/94‑1 (MQ=60)
AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG > SRR4302533.2461612/1‑94 (MQ=60)
AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG < SRR4302533.1610187/94‑1 (MQ=60)
AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG > SRR4302533.1741148/1‑94 (MQ=60)
TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT < SRR4302533.399760/94‑1 (MQ=60)
TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT < SRR4302533.4505712/94‑1 (MQ=60)
AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG > SRR4302533.5822725/1‑94 (MQ=60)
AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG < SRR4302533.674244/94‑1 (MQ=60)
AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG > SRR4302533.3321762/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302533.5812921/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302533.3525542/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302533.4268615/1‑94 (MQ=60)
GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT < SRR4302533.942498/94‑1 (MQ=60)
ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTC < SRR4302533.2670733/94‑1 (MQ=60)
CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA > SRR4302533.1399301/1‑94 (MQ=60)
CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA < SRR4302533.1451228/94‑1 (MQ=60)
CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA > SRR4302533.5918777/1‑94 (MQ=60)
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG < SRR4302533.934898/94‑1 (MQ=60)
GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC < SRR4302533.3638826/94‑1 (MQ=60)
ggccgatgccttgggaaaatcattcatttaatcccgcagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG < SRR4302533.2614419/52‑1 (MQ=60)
GGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT < SRR4302533.1119282/94‑1 (MQ=60)
GGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT > SRR4302533.1811054/1‑94 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT < SRR4302533.2517614/94‑1 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT > SRR4302533.2105003/1‑94 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT > SRR4302533.5680883/1‑94 (MQ=60)
GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT < SRR4302533.1039501/94‑1 (MQ=60)
TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC > SRR4302533.5935059/1‑94 (MQ=60)
TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC > SRR4302533.1821294/1‑94 (MQ=60)
TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC < SRR4302533.2574176/94‑1 (MQ=60)
CTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAAGATGAAACTCAGCGTCTTTTCC > SRR4302533.1934619/1‑94 (MQ=60)
CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA < SRR4302533.4882678/94‑1 (MQ=60)
GGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT > SRR4302533.6103580/1‑94 (MQ=60)
GGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT > SRR4302533.5482367/1‑94 (MQ=60)
GCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC < SRR4302533.2108345/94‑1 (MQ=60)
AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG > SRR4302533.5050750/1‑94 (MQ=60)
AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG > SRR4302533.3063649/1‑94 (MQ=60)
AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG > SRR4302533.5672632/1‑94 (MQ=60)
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG < SRR4302533.1521645/94‑1 (MQ=60)
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG < SRR4302533.4925753/94‑1 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGC > SRR4302533.1037279/1‑94 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAga > SRR4302533.5123629/1‑92 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC > SRR4302533.5024761/1‑94 (MQ=60)
CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgcca > SRR4302533.1322766/1‑90 (MQ=60)
ATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG > SRR4302533.4798123/1‑94 (MQ=60)
ATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG > SRR4302533.6271892/1‑94 (MQ=60)
TCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC > SRR4302533.1237393/1‑94 (MQ=60)
TCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC < SRR4302533.4637305/94‑1 (MQ=60)
CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG > SRR4302533.298747/1‑94 (MQ=60)
CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG < SRR4302533.1688180/94‑1 (MQ=60)
CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG < SRR4302533.4022189/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG < SRR4302533.2466723/94‑1 (MQ=60)
TTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGAGTCTTTACCATGTACTGAGCAAGCGGC > SRR4302533.2664411/1‑94 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT > SRR4302533.3243820/1‑94 (MQ=60)
TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG < SRR4302533.3846847/94‑1 (MQ=60)
TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG < SRR4302533.909459/94‑1 (MQ=60)
TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG < SRR4302533.3036944/94‑1 (MQ=60)
TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG < SRR4302533.5898591/94‑1 (MQ=60)
TAATCACGCAGC‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCAGCTGGA > SRR4302533.5599712/1‑94 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA > SRR4302533.261254/1‑94 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA < SRR4302533.390489/94‑1 (MQ=60)
CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT < SRR4302533.676615/94‑1 (MQ=60)
agccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGC < SRR4302533.5297237/90‑1 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT > SRR4302533.3921899/1‑94 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT < SRR4302533.1862548/94‑1 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCCCCCT > SRR4302533.2863096/1‑94 (MQ=60)
gccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCC < SRR4302533.1125213/91‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTTAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302533.5604085/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302533.4989810/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302533.3057312/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302533.200263/94‑1 (MQ=60)
CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTCCTGAGCAAGCGGCTGGAAAACTCGCCCTGG < SRR4302533.2512716/94‑1 (MQ=60)
CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG > SRR4302533.4225554/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302533.3706271/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302533.5962189/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG < SRR4302533.2310555/94‑1 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302533.1822151/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCCGGCTG > SRR4302533.5552280/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTTGCCCTGGCTGG > SRR4302533.2729695/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302533.622112/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302533.3755385/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302533.1072475/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302533.4355433/1‑94 (MQ=60)
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GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG > NC_000913/2418917‑2419103
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
