Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG > NC_000913/2418917‑2419103
|
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC > SRR4302540.9781978/1‑94 (MQ=60)
CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcca < SRR4302540.9665453/94‑4 (MQ=60)
CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcca < SRR4302540.8792488/94‑4 (MQ=60)
GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaa > SRR4302540.1645091/1‑90 (MQ=60)
CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaac > SRR4302540.518567/1‑89 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC < SRR4302540.2235533/94‑1 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC < SRR4302540.2183131/94‑1 (MQ=60)
GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC < SRR4302540.1386903/94‑1 (MQ=60)
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC > SRR4302540.3303738/1‑94 (MQ=60)
CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC > SRR4302540.7172700/1‑94 (MQ=60)
CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA > SRR4302540.7733933/1‑94 (MQ=60)
GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT < SRR4302540.3497818/94‑1 (MQ=60)
CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATT < SRR4302540.5148771/94‑1 (MQ=60)
CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATT < SRR4302540.10119018/94‑1 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC > SRR4302540.4143082/1‑94 (MQ=60)
CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC < SRR4302540.1100054/94‑1 (MQ=60)
TCATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC < SRR4302540.2745926/94‑1 (MQ=60)
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC > SRR4302540.4593163/1‑94 (MQ=60)
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCC < SRR4302540.4848459/94‑1 (MQ=60)
ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTAC > SRR4302540.7558330/1‑94 (MQ=60)
CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCACAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCT > SRR4302540.9970617/1‑94 (MQ=60)
CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCT < SRR4302540.9382956/94‑1 (MQ=60)
ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTA > SRR4302540.4136022/1‑94 (MQ=60)
TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTT < SRR4302540.3012911/94‑1 (MQ=60)
TTACAGTGGTTAGTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTAC < SRR4302540.7287425/94‑1 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC < SRR4302540.5472130/94‑1 (MQ=60)
TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC < SRR4302540.6584909/94‑1 (MQ=60)
ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACG < SRR4302540.9185263/94‑1 (MQ=60)
caggtGTTATTCTGGCAGGTAGGCGGAATGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC < SRR4302540.7876808/89‑1 (MQ=60)
CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACG > SRR4302540.10033064/1‑94 (MQ=60)
CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC > SRR4302540.6258248/1‑94 (MQ=60)
CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC < SRR4302540.1595693/94‑1 (MQ=60)
CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGC < SRR4302540.7876807/94‑1 (MQ=60)
AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT < SRR4302540.126055/94‑1 (MQ=60)
GTGGATATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCTAAATCAACATTTTAATCATGCAG‑‑‑CCCCCCccaaaccttttcctactttt > SRR4302540.9028806/1‑74 (MQ=60)
GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT < SRR4302540.6365498/94‑1 (MQ=60)
GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT < SRR4302540.6753211/94‑1 (MQ=60)
GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT < SRR4302540.802681/94‑1 (MQ=60)
GTTATTCTGGCAGGTAGGCGGGCTTGGGCCGATGCTTGGGCAAAATCCTCATTTTAATCCCGCAGCCCCCCCCCAAACCATTCCTTACGCTATT < SRR4302540.6365499/94‑1 (MQ=60)
GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAACTCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG < SRR4302540.1574351/94‑1 (MQ=60)
GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG > SRR4302540.5568164/1‑94 (MQ=60)
GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG < SRR4302540.5293473/94‑1 (MQ=60)
TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAA < SRR4302540.6822498/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302540.4945642/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302540.8955930/94‑1 (MQ=60)
ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC < SRR4302540.7556853/94‑1 (MQ=60)
TCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACG < SRR4302540.5711232/94‑1 (MQ=60)
TCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGT > SRR4302540.9061727/1‑94 (MQ=60)
CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTCAACGTT > SRR4302540.7261407/1‑94 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGGCCCCCCCCAAACCATTCCTTACGCTATTAAACGTT > SRR4302540.109970/1‑94 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAATCATTCCTTACGCTATTTAACGGTA > SRR4302540.8259114/1‑94 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302540.1317484/94‑1 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA > SRR4302540.1622400/1‑94 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302540.1357239/94‑1 (MQ=60)
TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302540.3819162/94‑1 (MQ=60)
GGCAGGTAGCCGAACTGGGGCCGATTTTTGGGAAAAACCATCATTTTAACCCCCCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTA < SRR4302540.6024381/94‑1 (MQ=28)
GAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA < SRR4302540.8971007/94‑1 (MQ=60)
CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA < SRR4302540.8036317/94‑1 (MQ=60)
CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA > SRR4302540.6568428/1‑94 (MQ=60)
CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA < SRR4302540.3713012/94‑1 (MQ=60)
CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA < SRR4302540.8036318/94‑1 (MQ=60)
AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG > SRR4302540.4589174/1‑94 (MQ=60)
GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG > SRR4302540.6467221/1‑94 (MQ=60)
GTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT < SRR4302540.7773197/94‑1 (MQ=60)
GAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT < SRR4302540.790423/94‑1 (MQ=60)
AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG > SRR4302540.7969221/1‑94 (MQ=60)
GCTGACTGGGCCCGATTCTTGGGCAAAATCATCATCTTAAGCACTCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA < SRR4302540.6670602/94‑1 (MQ=60)
GCGGACTGGGGCCGATGCTCGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA < SRR4302540.1232453/94‑1 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302540.1444049/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302540.5565867/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC > SRR4302540.10079548/1‑94 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC < SRR4302540.634732/94‑1 (MQ=60)
GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC < SRR4302540.4180438/94‑1 (MQ=60)
ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGCAACTC > SRR4302540.7408581/1‑94 (MQ=60)
CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA > SRR4302540.3906419/1‑94 (MQ=60)
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG < SRR4302540.4283022/94‑1 (MQ=60)
TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG < SRR4302540.4283282/94‑1 (MQ=60)
GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC < SRR4302540.1112285/94‑1 (MQ=60)
GGGCCGCTGCTTGGGCAACATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGACCGTTATCAGGTTGAAACTCAGCG < SRR4302540.9026246/94‑1 (MQ=60)
GCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC < SRR4302540.6460776/94‑1 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT < SRR4302540.6694634/94‑1 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT > SRR4302540.8418035/1‑94 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT > SRR4302540.6241905/1‑94 (MQ=60)
CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcccaaccatttccttagctaatggaaggtattcggtttaaactcaaagtat > SRR4302540.3938563/1‑43 (MQ=60)
CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT > SRR4302540.5870917/1‑94 (MQ=60)
CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT > SRR4302540.8034929/1‑94 (MQ=60)
GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTacggcttttgaacgtaatcgggttgaacttcggcgtctta > SRR4302540.6093460/1‑54 (MQ=60)
GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT < SRR4302540.4645074/94‑1 (MQ=60)
ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA > SRR4302540.2891883/1‑94 (MQ=60)
ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA > SRR4302540.8380346/1‑94 (MQ=60)
ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA > SRR4302540.2548473/1‑94 (MQ=60)
TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC > SRR4302540.8850006/1‑94 (MQ=60)
TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC > SRR4302540.8743455/1‑94 (MQ=60)
GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC > SRR4302540.152139/1‑94 (MQ=60)
GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC > SRR4302540.3709773/1‑94 (MQ=60)
GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC < SRR4302540.5942508/94‑1 (MQ=60)
CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA < SRR4302540.2843796/94‑1 (MQ=60)
CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA > SRR4302540.734812/1‑94 (MQ=60)
TTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT < SRR4302540.3156547/94‑1 (MQ=60)
TTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT < SRR4302540.8285382/94‑1 (MQ=60)
TGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG < SRR4302540.5111556/94‑1 (MQ=60)
GGTCAAAATCATCATTTTAATCACGCAGC‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA > SRR4302540.1503763/1‑94 (MQ=60)
GGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA < SRR4302540.4355176/94‑1 (MQ=60)
GCAAAATCATCATTTTAATCACGCGGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC < SRR4302540.6329205/94‑1 (MQ=60)
CAAAATCATCATTTTAATCCCGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCGGGTTGAAACTCAGCGTCTTTACCGTGTACT < SRR4302540.9093849/94‑1 (MQ=60)
AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG > SRR4302540.5381348/1‑94 (MQ=60)
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG < SRR4302540.855340/94‑1 (MQ=60)
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG > SRR4302540.7620405/1‑94 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCACCGTCTTTACCATGTACTGAGC > SRR4302540.1051268/1‑94 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACCTTATCAGGTTGAAACTCACCGTCTTTACAATGTAttgaca > SRR4302540.2980206/1‑88 (MQ=60)
TCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC > SRR4302540.4340413/1‑94 (MQ=60)
CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA > SRR4302540.1886332/1‑94 (MQ=60)
CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA < SRR4302540.1617292/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGG < SRR4302540.7838034/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG < SRR4302540.7838033/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG > SRR4302540.9665445/1‑94 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG < SRR4302540.5890037/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < SRR4302540.3406155/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < SRR4302540.841114/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAAACATTCCTTAAGCTATTGAACGTTTTCAGGGTGAAACTTAACGTCTTTAACATGTACTGAGCAAGCCGCT > SRR4302540.5773247/1‑94 (MQ=34)
TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTGG < SRR4302540.8122001/94‑1 (MQ=60)
TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG > SRR4302540.2180723/1‑94 (MQ=60)
AATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGCCTTTACCGTGTATTGAGCAAGCGGCTGG > SRR4302540.3280815/1‑94 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA < SRR4302540.6621988/94‑1 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA < SRR4302540.4970758/94‑1 (MQ=60)
ACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC < SRR4302540.6539340/94‑1 (MQ=60)
CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT < SRR4302540.6675830/94‑1 (MQ=60)
CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACC > SRR4302540.2026126/1‑94 (MQ=60)
cagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTC < SRR4302540.1639036/88‑1 (MQ=60)
cagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG > SRR4302540.4974661/6‑94 (MQ=60)
agccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCCC > SRR4302540.5163131/5‑94 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT > SRR4302540.482317/1‑94 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT < SRR4302540.3948276/94‑1 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT > SRR4302540.4437709/1‑94 (MQ=60)
ccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC > SRR4302540.9733866/3‑94 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302540.9756446/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302540.2652287/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG > SRR4302540.4495924/1‑94 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAATCTCAGCGTCTTTACCATGTAATGAGCAAGCGGCTAGAAAACTggacctggcg > SRR4302540.4850848/1‑84 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT < SRR4302540.8869900/94‑1 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT > SRR4302540.609969/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCGTGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302540.6369017/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302540.7051877/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.8913272/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.8467484/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.2454463/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302540.5490742/1‑94 (MQ=60)
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GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG > NC_000913/2418917‑2419103
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
