Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103
                                                                                                |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC                                                                                               <  SRR4302533.3256397/94‑1 (MQ=60)
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCC                                                                                               >  SRR4302533.5454633/1‑94 (MQ=60)
 AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCC                                                                                              <  SRR4302533.831300/94‑1 (MQ=60)
  GCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCcc                                                                                             <  SRR4302533.1486785/94‑3 (MQ=60)
     cccccCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCccaaa                                                                                          <  SRR4302533.3399887/89‑6 (MQ=60)
      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           >  SRR4302533.851629/1‑94 (MQ=60)
      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           >  SRR4302533.1764056/1‑94 (MQ=60)
      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAAC                                                                                           >  SRR4302533.618468/1‑94 (MQ=60)
       CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACC                                                                                          >  SRR4302533.901444/1‑94 (MQ=60)
        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA                                                                                         >  SRR4302533.2313674/1‑94 (MQ=60)
        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCA                                                                                         >  SRR4302533.2163221/1‑94 (MQ=60)
         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT                                                                                        >  SRR4302533.5096551/1‑94 (MQ=60)
         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT                                                                                        >  SRR4302533.5960731/1‑94 (MQ=60)
         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCAT                                                                                        >  SRR4302533.1862257/1‑94 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      >  SRR4302533.403763/1‑94 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      >  SRR4302533.2373601/1‑94 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      >  SRR4302533.4707785/1‑94 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTC                                                                                      <  SRR4302533.1277067/94‑1 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTT                                                                                   >  SRR4302533.5057921/1‑94 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTT                                                                                   <  SRR4302533.80057/94‑1 (MQ=60)
               TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTA                                                                                  <  SRR4302533.1047138/94‑1 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 >  SRR4302533.3671532/1‑94 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 <  SRR4302533.3714635/94‑1 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 >  SRR4302533.3637120/1‑94 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTAC                                                                                 <  SRR4302533.5303484/94‑1 (MQ=60)
                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACG                                                                                <  SRR4302533.2322292/94‑1 (MQ=60)
                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT                                                                              <  SRR4302533.3828856/94‑1 (MQ=60)
                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT                                                                              >  SRR4302533.4849560/1‑94 (MQ=60)
                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCT                                                                              <  SRR4302533.5160355/94‑1 (MQ=60)
                    GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTA                                                                             >  SRR4302533.6141965/1‑94 (MQ=60)
                      GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT                                                                           >  SRR4302533.5804716/1‑94 (MQ=60)
                      GGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATT                                                                           >  SRR4302533.3117322/1‑94 (MQ=60)
                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTG                                                                          <  SRR4302533.1351521/94‑1 (MQ=60)
                        TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGA                                                                         <  SRR4302533.156968/94‑1 (MQ=60)
                        TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGA                                                                         <  SRR4302533.5119336/94‑1 (MQ=60)
                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAA                                                                        <  SRR4302533.4891887/94‑1 (MQ=60)
                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302533.2500002/94‑1 (MQ=60)
                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302533.833394/94‑1 (MQ=60)
                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302533.3080836/94‑1 (MQ=60)
                           TTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACG                                                                      >  SRR4302533.204209/1‑94 (MQ=60)
                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302533.5663656/94‑1 (MQ=60)
                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302533.4361152/94‑1 (MQ=60)
                                GCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATC                                                                 <  SRR4302533.1195835/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               >  SRR4302533.2461612/1‑94 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302533.1610187/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               >  SRR4302533.1741148/1‑94 (MQ=60)
                                     TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                            <  SRR4302533.399760/94‑1 (MQ=60)
                                     TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                            <  SRR4302533.4505712/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           >  SRR4302533.5822725/1‑94 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           <  SRR4302533.674244/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           >  SRR4302533.3321762/1‑94 (MQ=60)
                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302533.5812921/1‑94 (MQ=60)
                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302533.3525542/1‑94 (MQ=60)
                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                       >  SRR4302533.4268615/1‑94 (MQ=60)
                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      <  SRR4302533.942498/94‑1 (MQ=60)
                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTC                                                     <  SRR4302533.2670733/94‑1 (MQ=60)
                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                    >  SRR4302533.1399301/1‑94 (MQ=60)
                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                    <  SRR4302533.1451228/94‑1 (MQ=60)
                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                    >  SRR4302533.5918777/1‑94 (MQ=60)
                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                                   <  SRR4302533.934898/94‑1 (MQ=60)
                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                                  <  SRR4302533.3638826/94‑1 (MQ=60)
                                                 ggccgatgccttgggaaaatcattcatttaatcccgcagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                                 <  SRR4302533.2614419/52‑1 (MQ=60)
                                                 GGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT                                                <  SRR4302533.1119282/94‑1 (MQ=60)
                                                 GGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT                                                >  SRR4302533.1811054/1‑94 (MQ=60)
                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              <  SRR4302533.2517614/94‑1 (MQ=60)
                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              >  SRR4302533.2105003/1‑94 (MQ=60)
                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                              >  SRR4302533.5680883/1‑94 (MQ=60)
                                                     GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                            <  SRR4302533.1039501/94‑1 (MQ=60)
                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302533.5935059/1‑94 (MQ=60)
                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302533.1821294/1‑94 (MQ=60)
                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          <  SRR4302533.2574176/94‑1 (MQ=60)
                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAAGATGAAACTCAGCGTCTTTTCC                                         >  SRR4302533.1934619/1‑94 (MQ=60)
                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCA                                        <  SRR4302533.4882678/94‑1 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     >  SRR4302533.6103580/1‑94 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     >  SRR4302533.5482367/1‑94 (MQ=60)
                                                              GCAAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC                                   <  SRR4302533.2108345/94‑1 (MQ=60)
                                                                AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG                                 >  SRR4302533.5050750/1‑94 (MQ=60)
                                                                AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG                                 >  SRR4302533.3063649/1‑94 (MQ=60)
                                                                AAAATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTG                                 >  SRR4302533.5672632/1‑94 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               <  SRR4302533.1521645/94‑1 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               <  SRR4302533.4925753/94‑1 (MQ=60)
                                                                   ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGC                              >  SRR4302533.1037279/1‑94 (MQ=60)
                                                                   ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAga                              >  SRR4302533.5123629/1‑92 (MQ=60)
                                                                   ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC                              >  SRR4302533.5024761/1‑94 (MQ=60)
                                                                     CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgcca                            >  SRR4302533.1322766/1‑90 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           >  SRR4302533.4798123/1‑94 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           >  SRR4302533.6271892/1‑94 (MQ=60)
                                                                       TCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC                          >  SRR4302533.1237393/1‑94 (MQ=60)
                                                                       TCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC                          <  SRR4302533.4637305/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         >  SRR4302533.298747/1‑94 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302533.1688180/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302533.4022189/94‑1 (MQ=60)
                                                                         ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                        <  SRR4302533.2466723/94‑1 (MQ=60)
                                                                          TTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGAGTCTTTACCATGTACTGAGCAAGCGGC                       >  SRR4302533.2664411/1‑94 (MQ=60)
                                                                           TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                      >  SRR4302533.3243820/1‑94 (MQ=60)
                                                                            TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302533.3846847/94‑1 (MQ=60)
                                                                            TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302533.909459/94‑1 (MQ=60)
                                                                            TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302533.3036944/94‑1 (MQ=60)
                                                                            TTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302533.5898591/94‑1 (MQ=60)
                                                                             TAATCACGCAGC‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCAGCTGGA                   >  SRR4302533.5599712/1‑94 (MQ=60)
                                                                              AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   >  SRR4302533.261254/1‑94 (MQ=60)
                                                                              AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   <  SRR4302533.390489/94‑1 (MQ=60)
                                                                                   CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT              <  SRR4302533.676615/94‑1 (MQ=60)
                                                                                       agccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGC           <  SRR4302533.5297237/90‑1 (MQ=60)
                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        >  SRR4302533.3921899/1‑94 (MQ=60)
                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302533.1862548/94‑1 (MQ=60)
                                                                                       C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCCCCCT        >  SRR4302533.2863096/1‑94 (MQ=60)
                                                                                        gccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCC          <  SRR4302533.1125213/91‑1 (MQ=60)
                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTTAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302533.5604085/94‑1 (MQ=60)
                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302533.4989810/94‑1 (MQ=60)
                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302533.3057312/94‑1 (MQ=60)
                                                                                           CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302533.200263/94‑1 (MQ=60)
                                                                                            CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTCCTGAGCAAGCGGCTGGAAAACTCGCCCTGG      <  SRR4302533.2512716/94‑1 (MQ=60)
                                                                                            CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG      >  SRR4302533.4225554/1‑94 (MQ=60)
                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302533.3706271/1‑94 (MQ=60)
                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302533.5962189/1‑94 (MQ=60)
                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   <  SRR4302533.2310555/94‑1 (MQ=60)
                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302533.1822151/1‑94 (MQ=60)
                                                                                               CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCCGGCTG   >  SRR4302533.5552280/1‑94 (MQ=60)
                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTTGCCCTGGCTGG  >  SRR4302533.2729695/1‑94 (MQ=60)
                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302533.622112/1‑94 (MQ=60)
                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302533.3755385/1‑94 (MQ=60)
                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302533.1072475/1‑94 (MQ=60)
                                                                                                CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302533.4355433/1‑94 (MQ=60)
                                                                                                |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑