Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,419,074 |
A→G |
N145S (AAC→AGC) |
yfcG → |
putative S‑transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,419,074 | 0 | A | G | 99.6%
| 848.5
/ ‑5.3
| 264 | N145S (AAC→AGC) | yfcG | putative S‑transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (129/134); total (129/135) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 |
Only 100 of 273 total aligned reads displayed.
ATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTC > NC_000913/2418984‑2419163
|
catcattttaatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCa > 2:1104991‑M2/22‑93 (MQ=255)
atcattttaatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCaa > 1:1865882‑M2/21‑93 (MQ=255)
attttaatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCg < 1:7747573‑M2/76‑1 (MQ=255)
attttaatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCg < 1:5825637‑M2/76‑1 (MQ=255)
taatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTg < 1:8028643‑M2/80‑1 (MQ=255)
aatcacgccgccCCCCCCAACCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTgg < 2:1774104‑M2/81‑1 (MQ=255)
aatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTgg < 1:4917795‑M2/81‑1 (MQ=255)
aatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTgg > 1:2157497‑M2/13‑93 (MQ=255)
aatcacgcagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTgg < 1:6549344‑M2/81‑1 (MQ=255)
cagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACt < 1:1621263‑M2/87‑1 (MQ=255)
cagccCCCCCCAAACCATACCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTc < 2:537074‑M2/88‑1 (MQ=255)
ccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGcc < 2:2305661‑M2/91‑1 (MQ=255)
ccccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCct > 2:5611920/1‑93 (MQ=255)
cccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctg > 2:775483/1‑93 (MQ=255)
cccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctg > 2:8190733/1‑93 (MQ=255)
ccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctgg < 2:8868304/93‑1 (MQ=255)
cAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctggctg < 1:8811397/93‑1 (MQ=255)
aaaCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctggctgg > 1:5431011/1‑93 (MQ=255)
aaaCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCctggctgg < 1:1108128/93‑1 (MQ=255)
aaCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTggg > 2:7110538/1‑93 (MQ=255)
aCCATTGCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGa < 1:4401059/93‑1 (MQ=255)
aCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGa < 1:5964952/93‑1 (MQ=255)
acATTCCTTACGCTATTGATCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAg < 1:9355367/92‑1 (MQ=255)
aTTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGc > 1:6287958/1‑93 (MQ=255)
tCCTTACGCTATTGAACGTTATCAGGTTGAAATTCAGCGTCTTTATCATGTACTGAGCTAGCGGCTGTAAAACTCCCCCTGGCTTGGAGgaga > 1:9015168/1‑93 (MQ=255)
tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCga < 2:3435860/93‑1 (MQ=255)
cTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgaga > 1:8753026/1‑93 (MQ=255)
ttACGCTATTGAACGTTATCAGGTTGAAACTCATCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGaa < 1:9680765/93‑1 (MQ=255)
ttACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGaa < 1:4342024/93‑1 (MQ=255)
ttACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGaa > 1:7050633/1‑93 (MQ=255)
ttACGATATTGATCGTACTCAGGTTGAAACTCAGCGTCTTTACAATGAACTGAGCAAGCGGCTGGAAAACTCGCCCAGGCTGGGAGGAAAGaa < 2:8978473/93‑1 (MQ=255)
tACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAAc < 2:5312170/93‑1 (MQ=255)
cGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTa < 2:7903005/93‑1 (MQ=255)
cTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACa < 1:733008/93‑1 (MQ=255)
cTATTGAACGTGATCAGGTTGCAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACa < 1:5067249/93‑1 (MQ=255)
aTTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGc > 1:393162/1‑93 (MQ=255)
tGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCAt < 1:9883833/93‑1 (MQ=255)
tGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCAt < 2:946090/93‑1 (MQ=255)
gAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCAtt > 1:2584877/1‑93 (MQ=255)
gAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGCCGAGAACTACAGCAtt > 2:1510138/1‑93 (MQ=255)
aaCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGTAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTg < 1:9676643/93‑1 (MQ=255)
aaCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTg > 2:1869158/1‑93 (MQ=255)
aCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGc > 1:6431389/1‑93 (MQ=255)
gTTATTGGGTTGAAACTCAGCGTCTTTACCAGTTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCgg < 1:476987/93‑1 (MQ=255)
ttATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGa > 2:1652661/1‑93 (MQ=255)
ttATAAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGa < 1:1190723/93‑1 (MQ=255)
tATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGat < 2:5987752/93‑1 (MQ=255)
aTCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGata < 2:2990438/93‑1 (MQ=255)
aTCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGata < 2:5878742/93‑1 (MQ=255)
aTCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGata > 2:9689534/1‑93 (MQ=255)
cAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATAtt > 1:7550441/1‑93 (MQ=255)
aGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTg > 2:9408626/1‑93 (MQ=255)
aGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTg < 2:2961780/93‑1 (MQ=255)
gTTTAAACTCAGCGTCTTTACCATGGACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGcc < 1:9758367/93‑1 (MQ=255)
gTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGcc > 1:3873389/1‑93 (MQ=255)
gTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGcc < 2:7312889/93‑1 (MQ=255)
gTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGcc < 2:111465/93‑1 (MQ=255)
gTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGcc > 2:860229/1‑93 (MQ=255)
ttGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCct < 2:2580950/93‑1 (MQ=255)
ttGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCct < 2:6686991/93‑1 (MQ=255)
ttGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCct < 1:6149662/93‑1 (MQ=255)
ttGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCct < 2:1321175/93‑1 (MQ=255)
gtGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCct < 1:5330742/92‑1 (MQ=255)
gAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgc < 2:5491897/93‑1 (MQ=255)
aaaCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgct < 1:5701586/93‑1 (MQ=255)
aaaCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgct > 2:4466702/1‑93 (MQ=255)
aaCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgctg < 2:5014748/93‑1 (MQ=255)
aaCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgctg > 2:4137449/1‑93 (MQ=255)
aaCTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgctg < 1:955761/93‑1 (MQ=255)
aCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTgg > 1:135255/1‑93 (MQ=255)
aCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTgg > 2:7493676/1‑93 (MQ=255)
cAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCg > 1:8158797/1‑93 (MQ=255)
cAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCg > 2:3330600/1‑93 (MQ=255)
aGCGTCTTTACCATGTACTGAGCCAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGt < 1:2746050/93‑1 (MQ=255)
aGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGt < 1:5007070/93‑1 (MQ=255)
cGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTgg > 1:2071916/1‑93 (MQ=255)
gTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTggg < 1:8340555/93‑1 (MQ=255)
tCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGt > 1:842384/1‑93 (MQ=255)
cTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGtt > 1:3424908/1‑93 (MQ=255)
tttACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTa < 1:6704371/93‑1 (MQ=255)
tgaCCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTTCCTGCTGGCCGTGGGTTaa < 2:476051/91‑1 (MQ=255)
tACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAAt < 2:4370025/93‑1 (MQ=255)
tACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAAt < 2:1576173/93‑1 (MQ=255)
aCCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATg > 1:9165792/1‑93 (MQ=255)
aCCATGTACTGAGCAAGCGGCTGGAAAACACGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAAtc > 1:2329082/1‑92 (MQ=255)
cATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATggc > 1:145525/1‑91 (MQ=255)
cATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGcc > 1:4489500/1‑93 (MQ=255)
aTGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt < 1:4132711/93‑1 (MQ=255)
aTGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt > 2:7081177/1‑93 (MQ=255)
tGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTg > 2:5834617/1‑93 (MQ=255)
tGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTg > 2:872479/1‑93 (MQ=255)
tGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTg < 1:8567848/93‑1 (MQ=255)
tGTACGGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTg < 1:465600/93‑1 (MQ=255)
gTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTgg < 1:6929587/93‑1 (MQ=255)
tACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGa < 2:9663991/93‑1 (MQ=255)
cTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACt > 1:3217743/1‑93 (MQ=255)
tGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATTCCTGGACTc > 2:141702/1‑93 (MQ=255)
tGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTc > 2:3773978/1‑93 (MQ=255)
tGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTc < 2:3921888/93‑1 (MQ=255)
tGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTc < 1:9461350/93‑1 (MQ=255)
|
ATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTC > NC_000913/2418984‑2419163
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCA > NC_000913/2418983‑2419167
|
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG < SRR4302540.855340/94‑1 (MQ=60)
AATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG > SRR4302540.7620405/1‑94 (MQ=60)
aaatatccttttaaaccccgcggccccccccaaccaattccTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG < SRR4302540.2258530/53‑1 (MQ=60)
ATCATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCACCGTCTTTACCATGTACTGAGC > SRR4302540.1051268/1‑94 (MQ=60)
TCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC > SRR4302540.4340413/1‑94 (MQ=60)
CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA < SRR4302540.1617292/94‑1 (MQ=60)
CATCATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA > SRR4302540.1886332/1‑94 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGG < SRR4302540.7838034/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG > SRR4302540.9665445/1‑94 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG < SRR4302540.7838033/94‑1 (MQ=60)
ATTTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG < SRR4302540.5890037/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < SRR4302540.841114/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT < SRR4302540.3406155/94‑1 (MQ=60)
TTTAATCACGCAGCC‑CCCCCCAAAACATTCCTTAAGCTATTGAACGTTTTCAGGGTGAAACTTAACGTCTTTAACATGTACTGAGCAAGCCGCT > SRR4302540.5773247/1‑94 (MQ=34)
TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTGG < SRR4302540.8122001/94‑1 (MQ=60)
TAATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGG > SRR4302540.2180723/1‑94 (MQ=60)
AATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGCCTTTACCGTGTATTGAGCAAGCGGCTGG > SRR4302540.3280815/1‑94 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA < SRR4302540.6621988/94‑1 (MQ=60)
AATCACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA < SRR4302540.4970758/94‑1 (MQ=60)
ACGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC < SRR4302540.6539340/94‑1 (MQ=60)
CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT < SRR4302540.6675830/94‑1 (MQ=60)
CGCAGCC‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACC > SRR4302540.2026126/1‑94 (MQ=60)
cagcccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTC < SRR4302540.1639036/88‑1 (MQ=60)
cagccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG > SRR4302540.4974661/6‑94 (MQ=60)
agccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCCC > SRR4302540.5163131/5‑94 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT > SRR4302540.482317/1‑94 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT < SRR4302540.3948276/94‑1 (MQ=60)
C‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT > SRR4302540.4437709/1‑94 (MQ=60)
ccCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC > SRR4302540.9733866/3‑94 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG > SRR4302540.4495924/1‑94 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302540.2652287/94‑1 (MQ=60)
CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG < SRR4302540.9756446/94‑1 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAATCTCAGCGTCTTTACCATGTAATGAGCAAGCGGCTAGAAAACTggacctggcg > SRR4302540.4850848/1‑84 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT > SRR4302540.609969/1‑94 (MQ=60)
CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT < SRR4302540.8869900/94‑1 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCGTGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302540.6369017/1‑94 (MQ=60)
CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG > SRR4302540.7051877/1‑94 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.8467484/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.8913272/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG < SRR4302540.2454463/94‑1 (MQ=60)
CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG > SRR4302540.5490742/1‑94 (MQ=60)
AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGG < SRR4302540.1119577/94‑1 (MQ=60)
AACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGA < SRR4302540.8176948/94‑1 (MQ=60)
ACCATTGCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAG < SRR4302540.4448789/94‑1 (MQ=60)
ACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAG < SRR4302540.6030954/94‑1 (MQ=60)
ACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGCCAGGGAG > SRR4302540.2981389/1‑94 (MQ=60)
CCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGG > SRR4302540.6929684/1‑94 (MQ=60)
ACATTCCTTACGCTATTGATCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGG < SRR4302540.9466793/94‑1 (MQ=60)
CATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGGGGC > SRR4302540.1403377/1‑94 (MQ=60)
CATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGC > SRR4302540.6357949/1‑94 (MQ=60)
CATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGC > SRR4302540.6357948/1‑94 (MQ=60)
CATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGC > SRR4302540.1403378/1‑94 (MQ=60)
ATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCG > SRR4302540.6773758/1‑94 (MQ=60)
TTCCTTACGCTATTGAACGTTATCAGGTTGAAATTCAGCGTCTTTATCATGTACTGAGCTAGCGGCTGTAAAACTCCCCCTGGCTTGGAGGAGA > SRR4302540.9123339/1‑94 (MQ=60)
CCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGA > SRR4302540.7019056/1‑94 (MQ=60)
CCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGA > SRR4302540.7523450/1‑94 (MQ=60)
CCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGA > SRR4302540.8854572/1‑94 (MQ=60)
CTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAA > SRR4302540.7129045/1‑94 (MQ=60)
CTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAA > SRR4302540.7219843/1‑94 (MQ=60)
CTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAA > SRR4302540.9166672/1‑94 (MQ=60)
TTACGCTATTGAACGTTATCAGGTTGAAACTCATCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAAC < SRR4302540.9794671/94‑1 (MQ=60)
TTACGCTATTGAACGTTATCAGGTTGAAACTCATCGTCGTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAAC < SRR4302540.9794672/94‑1 (MQ=60)
TTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAAC < SRR4302540.4389288/94‑1 (MQ=60)
TACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACT > SRR4302540.5072293/1‑94 (MQ=60)
TACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACT > SRR4302540.8493675/1‑94 (MQ=60)
CGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGCAAAGTCGCCCTGGCTGGGAGGCGAGGACTAC > SRR4302540.5403126/1‑94 (MQ=60)
GCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGTCTGGAAAACTCGCGCTGGCTGGGAGGCGAGAACTACA > SRR4302540.7924680/1‑94 (MQ=60)
GCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACA > SRR4302540.9074540/1‑94 (MQ=60)
CTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAG < SRR4302540.740845/94‑1 (MQ=60)
CTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAG < SRR4302540.5122038/94‑1 (MQ=60)
CTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAG > SRR4302540.9917200/1‑94 (MQ=60)
CTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAG < SRR4302540.2251504/94‑1 (MQ=60)
CTATTGAACGTGATCAGGTTGCAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAG < SRR4302540.5122037/94‑1 (MQ=60)
TATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGC > SRR4302540.397229/1‑94 (MQ=60)
TATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGC > SRR4302540.7835604/1‑94 (MQ=60)
TATTGAACGTTATCAGCTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCCGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGC < SRR4302540.9457262/94‑1 (MQ=60)
ATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGGACTACAGCA > SRR4302540.9580092/1‑94 (MQ=60)
ATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGCACTACAGCA > SRR4302540.4430169/1‑94 (MQ=60)
TGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATT < SRR4302540.9999244/94‑1 (MQ=60)
TGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATT > SRR4302540.2612739/1‑94 (MQ=60)
TGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATT > SRR4302540.6603600/1‑94 (MQ=60)
TGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATT < SRR4302540.4268903/94‑1 (MQ=60)
AACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGTAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGC < SRR4302540.9790499/94‑1 (MQ=60)
AACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGC < SRR4302540.9790500/94‑1 (MQ=60)
AACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGC > SRR4302540.6502974/1‑94 (MQ=60)
AACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGC > SRR4302540.6445138/1‑94 (MQ=60)
ACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCG < SRR4302540.1974756/94‑1 (MQ=60)
ACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCG < SRR4302540.4783528/94‑1 (MQ=60)
CGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGG > SRR4302540.5015137/1‑94 (MQ=60)
GTTATTGGGTTGAAACTCAGCGTCTTTACCAGTTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGA < SRR4302540.482093/94‑1 (MQ=60)
GTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGA < SRR4302540.482092/94‑1 (MQ=60)
GTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGA > SRR4302540.9840445/1‑94 (MQ=60)
TTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGAT < SRR4302540.4159807/94‑1 (MQ=60)
TTATAAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGAT < SRR4302540.1202996/94‑1 (MQ=60)
TATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATA > SRR4302540.9512294/1‑94 (MQ=60)
ATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATAT < SRR4302540.8725327/94‑1 (MQ=60)
TCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATT > SRR4302540.7635074/1‑94 (MQ=60)
TCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATT < SRR4302540.9368817/94‑1 (MQ=60)
TCAGGTTGAAACTAAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATT < SRR4302540.9021589/94‑1 (MQ=60)
CAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTG < SRR4302540.5843628/94‑1 (MQ=60)
GGTTGAACCTCAGCCTCTGTAACATGCACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCC < SRR4302540.2168689/94‑1 (MQ=60)
GGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCC < SRR4302540.5924431/94‑1 (MQ=60)
GGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCC < SRR4302540.5592942/94‑1 (MQ=60)
GGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCC > SRR4302540.3915489/1‑94 (MQ=60)
GTTTAAACTCAGCGTCTTTACCATGGACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCT < SRR4302540.9872837/94‑1 (MQ=60)
GTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTTCCT > SRR4302540.1981880/1‑94 (MQ=60)
GTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCT < SRR4302540.5782926/94‑1 (MQ=60)
GTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCT > SRR4302540.7545338/1‑94 (MQ=60)
TTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTG < SRR4302540.6218155/94‑1 (MQ=60)
TTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTG > SRR4302540.1122970/1‑94 (MQ=60)
GTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTG < SRR4302540.5389146/94‑1 (MQ=60)
TGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGC > SRR4302540.2432859/1‑94 (MQ=60)
GAAACTCAGCTTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCT < SRR4302540.5941368/94‑1 (MQ=60)
GAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCT > SRR4302540.1279643/1‑94 (MQ=60)
GAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTCCCTCCT > SRR4302540.1279642/1‑94 (MQ=60)
AAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTG < SRR4302540.5764363/94‑1 (MQ=60)
AAACACAGCGCCTCTACCAGGTACTGCGCAAGCGGCTGGAACACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTG < SRR4302540.16515/94‑1 (MQ=60)
AACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGG > SRR4302540.136671/1‑94 (MQ=60)
AACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGG < SRR4302540.10082855/94‑1 (MQ=60)
AACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGG < SRR4302540.965667/94‑1 (MQ=60)
CTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCC > SRR4302540.5402859/1‑94 (MQ=60)
TCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCG > SRR4302540.9148084/1‑94 (MQ=60)
TCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCG > SRR4302540.8253526/1‑94 (MQ=60)
CAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGT > SRR4302540.354972/1‑94 (MQ=60)
AGCGTCTTTACCATGTACTGAGCCAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTG < SRR4302540.2775708/94‑1 (MQ=60)
AGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTG < SRR4302540.5061298/94‑1 (MQ=60)
AGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTG < SRR4302540.7162062/94‑1 (MQ=60)
GCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGG > SRR4302540.2094195/1‑94 (MQ=60)
CGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGG > SRR4302540.5172174/1‑94 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAGCTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT < SRR4302540.8171951/94‑1 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGCGGCGAGAACTACAGCATTGCGGATATTGGCTGCTGGCGGTGGGT > SRR4302540.851319/1‑94 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT < SRR4302540.8437364/94‑1 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT > SRR4302540.4321122/1‑94 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT > SRR4302540.2837818/1‑94 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT > SRR4302540.8708301/1‑94 (MQ=60)
GTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGT > SRR4302540.851318/1‑94 (MQ=60)
TCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTT > SRR4302540.3462141/1‑94 (MQ=60)
TCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTT > SRR4302540.2128556/1‑94 (MQ=60)
TTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAA < SRR4302540.6778366/94‑1 (MQ=60)
TTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAAT < SRR4302540.3698326/94‑1 (MQ=60)
TACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATG > SRR4302540.9275769/1‑94 (MQ=60)
TACCATGTACTGAGCAAGCGGCTGGAAAACACGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATC > SRR4302540.2354168/1‑94 (MQ=60)
ACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGC < SRR4302540.6092820/94‑1 (MQ=60)
ACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGC > SRR4302540.4451143/1‑94 (MQ=60)
CCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGGC > SRR4302540.147032/1‑94 (MQ=60)
CCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCC > SRR4302540.4538185/1‑94 (MQ=60)
CATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCT > SRR4302540.8530820/1‑94 (MQ=60)
CATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATACTGCCTGCTGGCCGTGGGTTAATGCCT < SRR4302540.393347/94‑1 (MQ=60)
ATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTG > SRR4302540.9935350/1‑94 (MQ=60)
ATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTG > SRR4302540.2709729/1‑94 (MQ=60)
ATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTG < SRR4302540.4177413/94‑1 (MQ=60)
TGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGG < SRR4302540.8667356/94‑1 (MQ=60)
TGTACGGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGG < SRR4302540.470570/94‑1 (MQ=60)
GTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGA < SRR4302540.7006700/94‑1 (MQ=60)
TACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGAC > SRR4302540.1679120/1‑94 (MQ=60)
ACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACT > SRR4302540.4651799/1‑94 (MQ=60)
ACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACT > SRR4302540.3252691/1‑94 (MQ=60)
TGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCG > SRR4302540.7261300/1‑94 (MQ=60)
TGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCG < SRR4302540.9573611/94‑1 (MQ=60)
TGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCG > SRR4302540.339393/1‑94 (MQ=60)
TGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCG > SRR4302540.1842375/1‑94 (MQ=60)
TGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCG > SRR4302540.1842374/1‑94 (MQ=60)
GAGCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGC > SRR4302540.3690025/1‑94 (MQ=60)
GCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCA > SRR4302540.760886/1‑94 (MQ=60)
GCAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCAA < SRR4302540.7073743/94‑1 (MQ=60)
|
AATCATCATTTTAATCACGCAG‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCA > NC_000913/2418983‑2419167
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
