Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,438,697 A→C L310R (CTG→CGG)  fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,438,6970AC100.0% 670.8 / NA 207L310R (CTG→CGG) fabB3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (96/111);  total (96/111)

Only 100 of 211 total aligned reads displayed.

ACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438607‑2438786
                                                                                          |                                                                                         
     agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    >  1:9119517/1‑93 (MQ=255)
     agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  2:4545483/93‑1 (MQ=255)
      gcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTc                                                                                   >  1:1622671/1‑93 (MQ=255)
       cagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCa                                                                                  <  2:2763014/93‑1 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  1:6860671/93‑1 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  2:2269607/93‑1 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  2:3222713/93‑1 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  1:5268416/93‑1 (MQ=255)
          cgcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGt                                                                               <  1:1472430/93‑1 (MQ=255)
           gcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTc                                                                              <  1:9319166/93‑1 (MQ=255)
           gcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTc                                                                              <  2:8081379/93‑1 (MQ=255)
           gcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTc                                                                              <  2:722634/93‑1 (MQ=255)
           gcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTc                                                                              <  1:4182823/93‑1 (MQ=255)
            cccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCg                                                                             >  2:409941/1‑93 (MQ=255)
             ccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATTGCTGCCCGCTCTTTCACGTCGc                                                                            >  2:7118619/1‑93 (MQ=255)
             ccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGc                                                                            >  1:1013467/1‑93 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           <  2:5998053/93‑1 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           <  1:6533846/93‑1 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           <  2:8999445/93‑1 (MQ=255)
               agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          >  2:6847549/1‑93 (MQ=255)
               agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          >  2:9078890/1‑93 (MQ=255)
               agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          >  2:7980903/1‑93 (MQ=255)
                gagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCaa                                                                         <  1:6046741/93‑1 (MQ=255)
                 agagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAc                                                                        <  1:5427955/93‑1 (MQ=255)
                 agagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAc                                                                        <  2:5267953/93‑1 (MQ=255)
                    gTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCgg                                                                     >  2:3543565/1‑93 (MQ=255)
                    gTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCgg                                                                     <  1:6958827/93‑1 (MQ=255)
                      gACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAg                                                                   <  2:9804633/93‑1 (MQ=255)
                      gACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAg                                                                   <  2:4253998/93‑1 (MQ=255)
                      gACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAg                                                                   <  2:2001939/93‑1 (MQ=255)
                       aCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGt                                                                  <  1:5125/93‑1 (MQ=255)
                         cGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCg                                                                >  2:9413585/1‑93 (MQ=255)
                          ggTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGa                                                               >  1:2004827/1‑93 (MQ=255)
                          ggTCATGGCTTTGGTTGCAGAAATCGCCGGGCTATTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGa                                                               >  1:8763496/1‑93 (MQ=255)
                            tCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTAACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAg                                                             <  1:3940732/93‑1 (MQ=255)
                             cATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGt                                                            <  2:2245301/93‑1 (MQ=255)
                              aTGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGtc                                                           >  1:1587277/1‑92 (MQ=255)
                               tGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAc                                                          <  1:1103687/93‑1 (MQ=255)
                                ggCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAcc                                                         <  1:9054021/93‑1 (MQ=255)
                                 gCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCg                                                        <  2:837499/93‑1 (MQ=255)
                                 gCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCg                                                        >  1:7038215/1‑93 (MQ=255)
                                  cTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGt                                                       <  2:9910643/93‑1 (MQ=255)
                                  cTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGt                                                       <  1:126113/93‑1 (MQ=255)
                                    ttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTgg                                                     <  2:6041616/93‑1 (MQ=255)
                                      tgTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   <  1:445334/92‑1 (MQ=255)
                                        ttGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGt                                                 <  2:3995142/93‑1 (MQ=255)
                                           cAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCa                                              <  1:9202365/93‑1 (MQ=255)
                                           cAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGCCGAAGCACCGCGGGCGTTcg                                              >  1:5379174/1‑92 (MQ=255)
                                            aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAg                                             <  2:752522/93‑1 (MQ=255)
                                             gAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAgg                                            >  2:3016575/1‑93 (MQ=255)
                                              aaaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGt                                           >  1:6468674/1‑93 (MQ=255)
                                              aaaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGt                                           <  1:5451339/93‑1 (MQ=255)
                                              aaaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGGTGGAGGTCAGGt                                           >  2:8071978/1‑93 (MQ=255)
                                                 tCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAAt                                        <  1:273634/93‑1 (MQ=255)
                                                 tCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAAt                                        <  1:370629/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATc                                       <  1:4509232/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACAGATAGCTGCCCGCTCTTTCACGTCGCCAACCGCAGTAGTAGTACCGTGGGGGCTCAGGCAAtg                                       >  2:6743320/1‑92 (MQ=255)
                                                   gCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCg                                      <  1:2483998/93‑1 (MQ=255)
                                                    ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGa                                     >  1:7261764/1‑93 (MQ=255)
                                                     cGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAt                                    <  1:8147238/93‑1 (MQ=255)
                                                     cGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAt                                    >  2:1525120/1‑93 (MQ=255)
                                                      gggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   >  1:1120035/1‑93 (MQ=255)
                                                      cggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   <  2:9329407/92‑1 (MQ=255)
                                                       ggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTg                                  >  1:1329745/1‑93 (MQ=255)
                                                        gCTCTTATCTCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 <  1:3246724/93‑1 (MQ=255)
                                                        gCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 <  1:8434913/93‑1 (MQ=255)
                                                        gCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 <  2:8750956/93‑1 (MQ=255)
                                                         ctctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTggg                                <  1:4865634/93‑1 (MQ=255)
                                                          tctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgggg                               >  2:3944237/1‑93 (MQ=255)
                                                          tctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgggg                               <  1:9515654/93‑1 (MQ=255)
                                                          tctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgggg                               >  2:7822732/1‑93 (MQ=255)
                                                            ttATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATTCATTGGGGTa                             >  2:7333450/1‑93 (MQ=255)
                                                              aTCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTAta                           >  2:2885841/1‑92 (MQ=255)
                                                              aTCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATc                           <  2:5497751/93‑1 (MQ=255)
                                                              aTCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATc                           >  2:7832868/1‑93 (MQ=255)
                                                               tCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCa                          >  1:5846714/1‑93 (MQ=255)
                                                                   cGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGc                      >  2:3773780/1‑93 (MQ=255)
                                                                   cGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGc                      <  1:3344517/93‑1 (MQ=255)
                                                                   cGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAGGTAATCGATTGGGGCATCAACGc                      >  2:2621053/1‑93 (MQ=255)
                                                                    gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     >  2:3074983/1‑93 (MQ=255)
                                                                    gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     <  1:3052023/93‑1 (MQ=255)
                                                                     aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcct                    >  2:1209617/1‑92 (MQ=255)
                                                                      acacTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAt                   <  2:6944106/93‑1 (MQ=255)
                                                                         cTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCa                <  1:9942551/93‑1 (MQ=255)
                                                                         cTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCa                <  2:6336337/93‑1 (MQ=255)
                                                                          ttCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCAt               <  2:4701574/93‑1 (MQ=255)
                                                                           tCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATc              >  2:4079810/1‑93 (MQ=255)
                                                                           tCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATc              >  1:5017104/1‑93 (MQ=255)
                                                                           tCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATc              <  2:6774187/93‑1 (MQ=255)
                                                                             aCGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGc            >  1:779719/1‑93 (MQ=255)
                                                                              cGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGcc           >  2:9495924/1‑93 (MQ=255)
                                                                               ggATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGcct          >  1:7716725/1‑92 (MQ=255)
                                                                               ggATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCa          >  1:2063341/1‑93 (MQ=255)
                                                                               ggATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCa          >  2:4812173/1‑93 (MQ=255)
                                                                               ggATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCa          <  2:3882921/93‑1 (MQ=255)
                                                                                  tAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCt       <  1:9827741/93‑1 (MQ=255)
                                                                                    gCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTc     >  2:7365665/1‑93 (MQ=255)
                                                                                    gCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTc     >  1:890971/1‑93 (MQ=255)
                                                                                     cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    <  2:4187015/93‑1 (MQ=255)
                                                                                     cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    <  2:841856/93‑1 (MQ=255)
                                                                                          |                                                                                         
ACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438607‑2438786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  >  NC_000913/2438609‑2438790
                                                                                        |                                                                                             
GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCT                                                                                          <  SRR4302540.4777795/94‑1 (MQ=60)
 CCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTT                                                                                         <  SRR4302540.6173392/94‑1 (MQ=60)
  CAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTT                                                                                        >  SRR4302540.9229129/1‑94 (MQ=60)
   AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                       >  SRR4302540.1640452/1‑94 (MQ=60)
    GCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCA                                                                                      >  SRR4302540.2046270/1‑94 (MQ=60)
     CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAAACGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     <  SRR4302540.6014202/94‑1 (MQ=60)
      AGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACG                                                                                    <  SRR4302540.6936701/94‑1 (MQ=60)
      AGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACG                                                                                    <  SRR4302540.5325920/94‑1 (MQ=60)
      AGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACG                                                                                    <  SRR4302540.5325921/94‑1 (MQ=60)
       GCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGT                                                                                   <  SRR4302540.1248986/94‑1 (MQ=60)
        CGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTC                                                                                  <  SRR4302540.1488527/94‑1 (MQ=60)
         GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                 <  SRR4302540.4228270/94‑1 (MQ=60)
         GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                 <  SRR4302540.9430365/94‑1 (MQ=60)
         GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                 >  SRR4302540.9281651/1‑94 (MQ=60)
         GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                 <  SRR4302540.1613393/94‑1 (MQ=60)
          CCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGC                                                                                >  SRR4302540.1023742/1‑94 (MQ=60)
            CAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                              <  SRR4302540.6606374/94‑1 (MQ=60)
            CAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                              <  SRR4302540.7224177/94‑1 (MQ=60)
             AGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAA                                                                             <  SRR4302540.983858/94‑1 (MQ=60)
              GAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAC                                                                            <  SRR4302540.6113918/94‑1 (MQ=60)
               AGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACC                                                                           <  SRR4302540.5487652/94‑1 (MQ=60)
                  GTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGA                                                                        <  SRR4302540.7036241/94‑1 (MQ=60)
                    GACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGT                                                                      >  SRR4302540.8083033/1‑94 (MQ=60)
                    GACCGGTCATGGCTTTCGTTGCAGAACTCGCCAGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGT                                                                      <  SRR4302540.5625924/94‑1 (MQ=60)
                     ACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGGGTC                                                                     >  SRR4302540.592879/1‑94 (MQ=60)
                     ACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTC                                                                     <  SRR4302540.5185/94‑1 (MQ=60)
                       CGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGA                                                                   >  SRR4302540.2026528/1‑94 (MQ=60)
                       CGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTATTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGA                                                                   >  SRR4302540.8865094/1‑94 (MQ=60)
                        GGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAA                                                                  >  SRR4302540.7042141/1‑94 (MQ=60)
                        GGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAA                                                                  >  SRR4302540.1793717/1‑94 (MQ=60)
                          TCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTAACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGT                                                                <  SRR4302540.3983303/94‑1 (MQ=60)
                           CATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTC                                                               >  SRR4302540.1604614/1‑94 (MQ=60)
                           CATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTA                                                               <  SRR4302540.9547026/94‑1 (MQ=60)
                             TGGCTTTGGTTGCAGAAGTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                             <  SRR4302540.1115065/94‑1 (MQ=60)
                             TGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                             <  SRR4302540.1115064/94‑1 (MQ=60)
                              GGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCG                                                            <  SRR4302540.9162710/94‑1 (MQ=60)
                              GGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCG                                                            >  SRR4302540.7116455/1‑94 (MQ=60)
                                CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTG                                                          <  SRR4302540.8857529/94‑1 (MQ=60)
                                CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTG                                                          <  SRR4302540.127446/94‑1 (MQ=60)
                                    TGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAG                                                      <  SRR4302540.450076/94‑1 (MQ=60)
                                    GGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAG                                                      >  SRR4302540.5465952/1‑94 (MQ=60)
                                    GGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGACGAAGAACCGTGGGAG                                                      >  SRR4302540.1306500/1‑94 (MQ=60)
                                      TTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTT                                                    <  SRR4302540.8041202/94‑1 (MQ=60)
                                       TGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTC                                                   <  SRR4302540.4526921/94‑1 (MQ=60)
                                        GCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGCCGAAGcaccgcgggcgttcg                                                  >  SRR4302540.5438330/1‑79 (MQ=60)
                                         CAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAG                                                 <  SRR4302540.9312779/94‑1 (MQ=60)
                                         CAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAG                                                 >  SRR4302540.5335553/1‑94 (MQ=60)
                                         CAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAG                                                 <  SRR4302540.4983920/94‑1 (MQ=60)
                                         CAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAG                                                 <  SRR4302540.3002670/94‑1 (MQ=60)
                                          AGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGGTAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGCGGGAGTTCAGG                                                >  SRR4302540.2433143/1‑94 (MQ=60)
                                           GAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGT                                               >  SRR4302540.6540650/1‑94 (MQ=60)
                                           GAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGT                                               >  SRR4302540.6540651/1‑94 (MQ=60)
                                            AAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTA                                              <  SRR4302540.5511330/94‑1 (MQ=60)
                                             AATCGCCGGGCTCTTATCGCCGAAGACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAA                                             <  SRR4302540.313405/94‑1 (MQ=60)
                                               TCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                           <  SRR4302540.276323/94‑1 (MQ=60)
                                               TCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                           <  SRR4302540.374456/94‑1 (MQ=60)
                                                CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCG                                          <  SRR4302540.4558094/94‑1 (MQ=60)
                                                 GCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGA                                         <  SRR4302540.2510761/94‑1 (MQ=60)
                                                 GCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGA                                         >  SRR4302540.7342787/1‑94 (MQ=60)
                                                  CCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCACCCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAT                                        <  SRR4302540.782391/94‑1 (MQ=60)
                                                   CGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATT                                       <  SRR4302540.8241815/94‑1 (MQ=60)
                                                   CGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATT                                       >  SRR4302540.2617734/1‑94 (MQ=60)
                                                   CGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATT                                       >  SRR4302540.1131655/1‑94 (MQ=60)
                                                    GGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTG                                      >  SRR4302540.1343638/1‑94 (MQ=60)
                                                     GGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTTG                                     >  SRR4302540.8949637/1‑94 (MQ=60)
                                                     GGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGG                                     >  SRR4302540.1387833/1‑94 (MQ=60)
                                                      GCTCTTATCTCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                    <  SRR4302540.3282079/94‑1 (MQ=60)
                                                      GCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                    >  SRR4302540.3292468/1‑94 (MQ=60)
                                                      GCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                    <  SRR4302540.5557264/94‑1 (MQ=60)
                                                      GCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                    <  SRR4302540.8532839/94‑1 (MQ=60)
                                                       CTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGG                                   <  SRR4302540.4917816/94‑1 (MQ=60)
                                                        TCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGT                                  <  SRR4302540.9628354/94‑1 (MQ=60)
                                                         CTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTA                                 >  SRR4302540.6651991/1‑94 (MQ=60)
                                                         CTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTA                                 >  SRR4302540.5112410/1‑94 (MQ=60)
                                                          TTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTAT                                >  SRR4302540.8254196/1‑94 (MQ=60)
                                                            ATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCA                              >  SRR4302540.5911386/1‑94 (MQ=60)
                                                                CCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTGTCAACGC                          >  SRR4302540.9180485/1‑94 (MQ=60)
                                                                 CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCC                         <  SRR4302540.3381211/94‑1 (MQ=60)
                                                                 CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCC                         <  SRR4302540.4517432/94‑1 (MQ=60)
                                                                  GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                        <  SRR4302540.3085513/94‑1 (MQ=60)
                                                                  GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                        >  SRR4302540.904983/1‑94 (MQ=60)
                                                                  GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGGCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGGATCAAAGCCA                        >  SRR4302540.4124212/1‑94 (MQ=60)
                                                                   AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                       <  SRR4302540.2329152/94‑1 (MQ=60)
                                                                   AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                       <  SRR4302540.5502552/94‑1 (MQ=60)
                                                                     CACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGC                     >  SRR4302540.736186/1‑94 (MQ=60)
                                                                       CTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCAT                   >  SRR4302540.3736273/1‑94 (MQ=60)
                                                                       CTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCAT                   <  SRR4302540.10058665/94‑1 (MQ=60)
                                                                        TTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATC                  >  SRR4302540.5071422/1‑94 (MQ=60)
                                                                          CACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGC                >  SRR4302540.788025/1‑94 (MQ=60)
                                                                            CGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAGCGTGGGAGGTCAGGGAATCGATTGGGGTATCAACGCCATGCATCGCCA              >  SRR4302540.2085541/1‑94 (MQ=60)
                                                                            CGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCT              >  SRR4302540.7805858/1‑94 (MQ=60)
                                                                            CGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCA              <  SRR4302540.9951867/94‑1 (MQ=60)
                                                                            CGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCA              >  SRR4302540.2085542/1‑94 (MQ=60)
                                                                             GGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCAT             >  SRR4302540.1507669/1‑94 (MQ=60)
                                                                               ATAGCTGCCCGCTCTTTCACGTCGACAACCGGAGCCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCAATGCATCGCCATCT           >  SRR4302540.7542191/1‑94 (MQ=60)
                                                                                TAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTT          <  SRR4302540.9942699/94‑1 (MQ=60)
                                                                                 AGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTC         >  SRR4302540.900440/1‑94 (MQ=60)
                                                                                  GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA        <  SRR4302540.4267040/94‑1 (MQ=60)
                                                                                   CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       >  SRR4302540.9394215/1‑94 (MQ=60)
                                                                                   CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       >  SRR4302540.3861617/1‑94 (MQ=60)
                                                                                    TGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG      <  SRR4302540.6997328/94‑1 (MQ=60)
                                                                                     GCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGC     <  SRR4302540.963028/94‑1 (MQ=60)
                                                                                     GCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGC     <  SRR4302540.1086705/94‑1 (MQ=60)
                                                                                      CCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCG    >  SRR4302540.2472428/1‑94 (MQ=60)
                                                                                      CCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCA    <  SRR4302540.5819692/94‑1 (MQ=60)
                                                                                       CCGCTCTTTCACGTCGCCAACCTGAGTCGAAGTACCTTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG   >  SRR4302540.1833463/1‑94 (MQ=60)
                                                                                        CGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  >  SRR4302540.6840236/1‑94 (MQ=60)
                                                                                        |                                                                                             
GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  >  NC_000913/2438609‑2438790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑