Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,442,106	A→G	S28S (AGT→AGC)	b2325 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,442,106	0	A	G	100.0%	947.5 / NA	291	S28S (AGT→AGC)	b2325	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (151/140); total (151/140)

Only 100 of 296 total aligned reads displayed.

GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT  >  NC_000913/2442016‑2442195

gCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCCTCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCt                                                                                         <  1:7215414/93‑1 (MQ=255)

gCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCt                                                                                         >  1:7857215/1‑93 (MQ=255)

 cTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAACTACCCGCTg                                                                                        >  1:4831748/1‑93 (MQ=255)

 cTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTg                                                                                        <  2:6800756/93‑1 (MQ=255)

   aaCGGTCGTATGCACCGCCTGAGCGGAGTGGTAATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGc                                                                                      >  2:8421161/1‑93 (MQ=255)

      ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaaa                                                                                   >  2:7849460/1‑93 (MQ=255)

         cGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGTTGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaa                                                                                <  2:5688148/93‑1 (MQ=255)

          gTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaac                                                                               <  1:5613821/93‑1 (MQ=255)

          gTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaacaac                                                                               >  2:548006/1‑93 (MQ=255)

           tATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACt                                                                              >  1:8588749/1‑93 (MQ=255)

           tATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACt                                                                              >  2:1196054/1‑93 (MQ=255)

           tATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACt                                                                              <  1:6169335/93‑1 (MQ=255)

           tATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACt                                                                              >  1:2944672/1‑93 (MQ=255)

            aTGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtc                                                                             >  1:3296798/1‑93 (MQ=255)

             tGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtca                                                                            >  1:3217502/1‑93 (MQ=255)

             tGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtca                                                                            >  1:9876732/1‑93 (MQ=255)

               cACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatc                                                                          >  2:5927558/1‑93 (MQ=255)

               cACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatc                                                                          <  1:8126106/93‑1 (MQ=255)

               cACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatc                                                                          >  2:2600617/1‑93 (MQ=255)

                cccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatca                                                                         <  2:4134849/92‑1 (MQ=255)

                 ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat                                                                        <  2:3614734/93‑1 (MQ=255)

                  cGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcatc                                                                       <  2:3316276/93‑1 (MQ=255)

                    ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc                                                                     >  2:1151594/1‑93 (MQ=255)

                    ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc                                                                     >  1:4650273/1‑93 (MQ=255)

                      tGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTg                                                                   >  2:6391522/1‑93 (MQ=255)

                         gctgAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCa                                                                <  1:10015407/90‑1 (MQ=255)

                           ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg                                                              <  2:8661532/93‑1 (MQ=255)

                           gcaGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg                                                              >  1:5069773/3‑93 (MQ=255)

                            gAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATgg                                                             <  1:2369672/93‑1 (MQ=255)

                            gAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATgg                                                             >  1:5330882/1‑93 (MQ=255)

                             aGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGt                                                            <  2:3521830/93‑1 (MQ=255)

                             aGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGt                                                            <  2:5353718/93‑1 (MQ=255)

                               tGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCa                                                          >  1:5012145/1‑93 (MQ=255)

                                 gTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAc                                                        <  2:8035824/93‑1 (MQ=255)

                                 gTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAc                                                        <  2:6745939/93‑1 (MQ=255)

                                 gTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAc                                                        <  1:9073333/93‑1 (MQ=255)

                                  tcatcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAcc                                                       <  2:220953/93‑1 (MQ=255)

                                   catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa                                                      >  2:2043585/1‑93 (MQ=255)

                                    atcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCTACGCAAATACCCGCTGTCAAACAACTCATAATCACTGGCATCGTCATCCaa                                                     >  2:7442999/1‑92 (MQ=255)

                                     tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa                                                    >  2:4682936/1‑93 (MQ=255)

                                     tcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATa                                                    >  1:9459521/1‑93 (MQ=255)

                                      caccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAc                                                   <  2:9792141/93‑1 (MQ=255)

                                      caccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAc                                                   <  1:6599884/93‑1 (MQ=255)

                                       cccacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  <  2:2742304/92‑1 (MQ=255)

                                       accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  >  1:8368025/1‑93 (MQ=255)

                                       accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  <  2:2953355/93‑1 (MQ=255)

                                       accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  >  2:4924576/1‑93 (MQ=255)

                                       accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  <  1:127663/93‑1 (MQ=255)

                                       accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  >  2:1309452/1‑93 (MQ=255)

                                         cacTTTCCAGTTCAGCGATAGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTAGCATGGTCAACCATAccaa                                                <  1:8923012/93‑3 (MQ=255)

                                          ccTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTc                                               <  2:4327479/92‑1 (MQ=255)

                                          acTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTc                                               >  2:6854179/1‑93 (MQ=255)

                                          acTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTc                                               >  1:5166700/1‑93 (MQ=255)

                                            tttCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGa                                             <  2:8538675/93‑1 (MQ=255)

                                            tttCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGa                                             >  1:7317963/1‑93 (MQ=255)

                                            ttcccAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATGCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGa                                             <  2:9009010/90‑1 (MQ=255)

                                              tCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAtt                                           <  2:1227545/93‑1 (MQ=255)

                                              tCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAtt                                           <  2:3240891/93‑1 (MQ=255)

                                              tCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAtt                                           >  1:1547/1‑93 (MQ=255)

                                                cAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTaa                                         <  1:4349465/93‑1 (MQ=255)

                                                 aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        >  2:3914747/1‑93 (MQ=255)

                                                 aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        >  2:767575/1‑93 (MQ=255)

                                                  gTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATg                                       <  1:3164619/93‑1 (MQ=255)

                                                  gTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATg                                       >  1:9699716/1‑93 (MQ=255)

                                                    tCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGcc                                     >  1:7358572/1‑93 (MQ=255)

                                                      tGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAg                                   >  2:96196/1‑93 (MQ=255)

                                                       gCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGa                                  <  1:5991914/93‑1 (MQ=255)

                                                        cGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGaa                                 <  1:3639504/93‑1 (MQ=255)

                                                        cGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGaa                                 <  2:5079611/93‑1 (MQ=255)

                                                        cGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGaa                                 <  1:5286729/93‑1 (MQ=255)

                                                          aTGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATg                               >  1:7103679/1‑93 (MQ=255)

                                                           tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc                              <  2:1733294/93‑1 (MQ=255)

                                                           tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc                              <  2:2149042/93‑1 (MQ=255)

                                                           tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc                              >  2:5798672/1‑93 (MQ=255)

                                                             gCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGt                            <  2:1407461/93‑1 (MQ=255)

                                                                 aTGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAtt                        >  1:2083799/1‑93 (MQ=255)

                                                                  tGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTc                       >  1:4451657/1‑93 (MQ=255)

                                                                   gTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCa                      >  2:1837960/1‑93 (MQ=255)

                                                                     cAGGTGGCCACGCAAATGCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa                    <  1:1739761/93‑1 (MQ=255)

                                                                     cAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa                    <  1:8756208/93‑1 (MQ=255)

                                                                     cAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa                    <  2:2862047/93‑1 (MQ=255)

                                                                       ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt                  >  1:8215928/1‑93 (MQ=255)

                                                                       ggTGCCCGCGCAAATCCCCGCTGGCATACAACTCATCATCCCTGGCATGTTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt                  <  2:1084271/93‑1 (MQ=255)

                                                                        gTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTc                 <  1:10036489/93‑1 (MQ=255)

                                                                        gTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTc                 <  1:8081783/93‑1 (MQ=255)

                                                                         tGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTcc                <  1:3975903/93‑1 (MQ=255)

                                                                          ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               >  2:6254816/1‑93 (MQ=255)

                                                                          ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               <  1:4686813/93‑1 (MQ=255)

                                                                          ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               >  2:1668125/1‑93 (MQ=255)

                                                                             cACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGa            <  1:2809127/93‑1 (MQ=255)

                                                                             cACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGa            <  2:7686293/93‑1 (MQ=255)

                                                                              aCGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGat           >  1:7419171/1‑93 (MQ=255)

                                                                               cGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatc          >  1:1879215/1‑93 (MQ=255)

                                                                                  aaaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatcatc       >  1:4208440/1‑93 (MQ=255)

                                                                                     tACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttc    >  1:2568263/1‑93 (MQ=255)

                                                                                     tACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttc    <  2:696305/93‑1 (MQ=255)

                                                                                      aCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttct   <  2:9042633/93‑1 (MQ=255)

                                                                                      aCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttct   >  1:8869896/1‑93 (MQ=255)

                                                                                       cccGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATcttctt  <  2:3135580/93‑1 (MQ=255)

                                                                                       cccGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATcttctt  >  2:1709422/1‑93 (MQ=255)

GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT  >  NC_000913/2442016‑2442195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC  >  NC_000913/2442015‑2442198

GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCT                                                                                            >  SRR4302540.5370069/1‑94 (MQ=60)

GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCT                                                                                            >  SRR4302540.7949024/1‑94 (MQ=60)

 GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCCTCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTG                                                                                           <  SRR4302540.7295844/94‑1 (MQ=60)

 GCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAACTACCCGCTG                                                                                           >  SRR4302540.4883508/1‑94 (MQ=60)

   TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC                                                                                         >  SRR4302540.4086205/1‑94 (MQ=60)

   TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC                                                                                         >  SRR4302540.442402/1‑94 (MQ=60)

    AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCA                                                                                        >  SRR4302540.6654012/1‑94 (MQ=60)

       GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC                                                                                     >  SRR4302540.9866561/1‑94 (MQ=60)

       GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC                                                                                     >  SRR4302540.1390892/1‑94 (MQ=60)

       GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC                                                                                     <  SRR4302540.7704173/94‑1 (MQ=60)

        GTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACA                                                                                    <  SRR4302540.3000195/94‑1 (MQ=60)

        GTCGGATGCACCGCCTGAGCGGAGTAGTCATCACCTCTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACA                                                                                    <  SRR4302540.3000196/94‑1 (MQ=60)

          CGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCTGGTGGCCACGCAAATACCCGCTGGCAAACAAC                                                                                  >  SRR4302540.9769010/1‑94 (MQ=60)

           GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                 >  SRR4302540.8351509/1‑94 (MQ=60)

           GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                 >  SRR4302540.2977050/1‑94 (MQ=60)

           GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                 >  SRR4302540.8688590/1‑94 (MQ=60)

           GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                 >  SRR4302540.5231560/1‑94 (MQ=60)

           GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                 <  SRR4302540.5675579/94‑1 (MQ=60)

            TATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTC                                                                                >  SRR4302540.3332879/1‑94 (MQ=60)

            TATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTC                                                                                >  SRR4302540.3332872/1‑94 (MQ=60)

            TATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTC                                                                                <  SRR4302540.6238073/94‑1 (MQ=60)

            TATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGCCTAATGTCAGGTGTCCACGCAAATACCCGCTGGCACACACCTC                                                                                >  SRR4302540.734243/1‑94 (MQ=60)

            TATGCACAGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTC                                                                                >  SRR4302540.9959933/1‑94 (MQ=60)

             ATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCA                                                                               >  SRR4302540.1744846/1‑94 (MQ=60)

             ATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCA                                                                               >  SRR4302540.251755/1‑94 (MQ=60)

             ATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCA                                                                               >  SRR4302540.3252449/1‑94 (MQ=60)

             ATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCA                                                                               >  SRR4302540.9992082/1‑94 (MQ=60)

              TGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCAT                                                                              <  SRR4302540.897791/94‑1 (MQ=60)

              TGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCAT                                                                              <  SRR4302540.8874231/94‑1 (MQ=60)

                CACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCA                                                                            <  SRR4302540.4379001/94‑1 (MQ=60)

                CACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCA                                                                            <  SRR4302540.8220425/94‑1 (MQ=60)

                 CCCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT                                                                           <  SRR4302540.7452297/94‑1 (MQ=60)

                    GCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAC                                                                        >  SRR4302540.4700045/1‑94 (MQ=60)

                      CTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTG                                                                      >  SRR4302540.5536157/1‑94 (MQ=60)

                        GAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGC                                                                    >  SRR4302540.6231041/1‑94 (MQ=60)

                         GGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCA                                                                   <  SRR4302540.3400865/94‑1 (MQ=60)

                          GCTGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCAT                                                                  <  SRR4302540.10131995/94‑1 (MQ=60)

                          GCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCAT                                                                  <  SRR4302540.4888365/94‑1 (MQ=60)

                           CGCAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATG                                                                 >  SRR4302540.5124585/1‑94 (MQ=60)

                            GGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGG                                                                >  SRR4302540.5389288/1‑94 (MQ=60)

                            GGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGG                                                                >  SRR4302540.5389287/1‑94 (MQ=60)

                             GAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGT                                                               <  SRR4302540.7430081/94‑1 (MQ=60)

                             GAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGT                                                               <  SRR4302540.2395193/94‑1 (MQ=60)

                              GGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTC                                                              <  SRR4302540.1531582/94‑1 (MQ=60)

                               GTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCA                                                             >  SRR4302540.7994718/1‑94 (MQ=60)

                               GTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCA                                                             >  SRR4302540.5066410/1‑94 (MQ=60)

                               GTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCA                                                             >  SRR4302540.5066409/1‑94 (MQ=60)

                               GTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCA                                                             <  SRR4302540.5271256/94‑1 (MQ=60)

                                  GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC                                                          <  SRR4302540.9182293/94‑1 (MQ=60)

                                    CATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAT                                                        >  SRR4302540.3272071/1‑94 (MQ=60)

                                    CATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAT                                                        >  SRR4302540.1901192/1‑94 (MQ=60)

                                    CATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAT                                                        >  SRR4302540.4873264/1‑94 (MQ=60)

                                    CATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAT                                                        <  SRR4302540.9774003/94‑1 (MQ=60)

                                     ATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATA                                                       >  SRR4302540.5841487/1‑94 (MQ=60)

                                     ATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATA                                                       >  SRR4302540.7418701/1‑94 (MQ=60)

                                     ATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATA                                                       >  SRR4302540.9571763/1‑94 (MQ=60)

                                     ATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGCCAACCATC                                                       >  SRR4302540.8291525/1‑94 (MQ=60)

                                      TCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAC                                                      <  SRR4302540.6537183/94‑1 (MQ=60)

                                       CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC                                                     >  SRR4302540.8465136/1‑94 (MQ=60)

                                       CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC                                                     >  SRR4302540.1871688/1‑94 (MQ=60)

                                       CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC                                                     <  SRR4302540.6672971/94‑1 (MQ=60)

                                       CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC                                                     >  SRR4302540.7474648/1‑94 (MQ=60)

                                        cgcacgttccacgtctgcgaggcCTAATGTCAGGTGGCCACGCAAATCCCCGCTGGCAAACAACCCATCATCCCTGGCATGGTCAACCATACCG                                                    <  SRR4302540.281714/71‑1 (MQ=60)

                                        CCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCG                                                    <  SRR4302540.281715/94‑1 (MQ=60)

                                        ACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCG                                                    <  SRR4302540.129009/94‑1 (MQ=60)

                                        ACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCG                                                    <  SRR4302540.2895213/94‑1 (MQ=60)

                                         CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                   >  SRR4302540.804325/1‑94 (MQ=60)

                                         CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                   >  SRR4302540.7591852/1‑94 (MQ=60)

                                          CACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTC                                                  >  SRR4302540.5222897/1‑94 (MQ=60)

                                          CACTTTCCAGTTCAGCGATAGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTAGCATGGTCAACCATACCaac                                                  <  SRR4302540.9026575/94‑4 (MQ=60)

                                            CTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGA                                                >  SRR4302540.320322/1‑94 (MQ=60)

                                            CTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGA                                                >  SRR4302540.7399695/1‑94 (MQ=60)

                                             TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT                                               >  SRR4302540.2324933/1‑94 (MQ=60)

                                             TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT                                               <  SRR4302540.4705173/94‑1 (MQ=60)

                                             TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT                                               >  SRR4302540.4805308/1‑94 (MQ=60)

                                             TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT                                               <  SRR4302540.9289288/94‑1 (MQ=60)

                                              TTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATT                                              >  SRR4302540.1559/1‑94 (MQ=60)

                                               TCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA                                             >  SRR4302540.7354586/1‑94 (MQ=60)

                                               TCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA                                             <  SRR4302540.6963297/94‑1 (MQ=60)

                                               TCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA                                             >  SRR4302540.8474570/1‑94 (MQ=60)

                                                 CAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAT                                           <  SRR4302540.4396782/94‑1 (MQ=60)

                                                  AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                          >  SRR4302540.9813755/1‑94 (MQ=60)

                                                  AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                          >  SRR4302540.9200003/1‑94 (MQ=60)

                                                   GTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGC                                         <  SRR4302540.3199036/94‑1 (MQ=60)

                                                    TTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCC                                        >  SRR4302540.7440630/1‑94 (MQ=60)

                                                     TCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCA                                       <  SRR4302540.2724280/94‑1 (MQ=60)

                                                     TCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCA                                       >  SRR4302540.3820547/1‑94 (MQ=60)

                                                      CTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAG                                      <  SRR4302540.10099483/94‑1 (MQ=60)

                                                       TGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGA                                     <  SRR4302540.8902538/94‑1 (MQ=60)

                                                       TGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGA                                     <  SRR4302540.4714114/94‑1 (MQ=60)

                                                        GCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAA                                    <  SRR4302540.6058300/94‑1 (MQ=60)

                                                         CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT                                   <  SRR4302540.5344502/94‑1 (MQ=60)

                                                         CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT                                   >  SRR4302540.8326523/1‑94 (MQ=60)

                                                         CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT                                   <  SRR4302540.3679357/94‑1 (MQ=60)

                                                          GATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATG                                  >  SRR4302540.7182716/1‑94 (MQ=60)

                                                           ATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGC                                 >  SRR4302540.377529/1‑94 (MQ=60)

                                                             GGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGT                               <  SRR4302540.2033649/94‑1 (MQ=60)

                                                             GGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGT                               <  SRR4302540.5129725/94‑1 (MQ=60)

                                                             GGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGG                               >  SRR4302540.5080738/1‑94 (MQ=60)

                                                              GCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTG                              >  SRR4302540.881862/1‑94 (MQ=60)

                                                              GCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTG                              <  SRR4302540.4542106/94‑1 (MQ=60)

                                                               CTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGA                             >  SRR4302540.7213969/1‑94 (MQ=60)

                                                                TAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAT                            >  SRR4302540.4334643/1‑94 (MQ=60)

                                                                 AATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATT                           >  SRR4302540.8291063/1‑94 (MQ=60)

                                                                 AATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATT                           >  SRR4302540.2106181/1‑94 (MQ=60)

                                                                  ATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTC                          >  SRR4302540.4499913/1‑94 (MQ=60)

                                                                   TGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCA                         >  SRR4302540.2415037/1‑94 (MQ=60)

                                                                   TGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCA                         <  SRR4302540.7204407/94‑1 (MQ=60)

                                                                      CAGGTGGCCACGCAAATGCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC                      <  SRR4302540.1758576/94‑1 (MQ=60)

                                                                      CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC                      <  SRR4302540.8857771/94‑1 (MQ=60)

                                                                       AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT                     >  SRR4302540.8311421/1‑94 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.9138036/94‑1 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.10153207/94‑1 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.8175584/94‑1 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.8175585/94‑1 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.8175586/94‑1 (MQ=60)

                                                                         GTGGCCACGCAAATACCCGCGGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                   <  SRR4302540.10153206/94‑1 (MQ=60)

                                                                          TGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                  <  SRR4302540.4018743/94‑1 (MQ=60)

                                                                          TGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                  <  SRR4302540.8818079/94‑1 (MQ=60)

                                                                           GGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGC                 <  SRR4302540.4736937/94‑1 (MQ=60)

                                                                            GCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG                <  SRR4302540.1125962/94‑1 (MQ=60)

                                                                            GCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG                <  SRR4302540.320845/94‑1 (MQ=60)

                                                                            GCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG                <  SRR4302540.1125961/94‑1 (MQ=60)

                                                                            GCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG                <  SRR4302540.4423841/94‑1 (MQ=60)

                                                                             CCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGA               >  SRR4302540.10030074/1‑94 (MQ=60)

                                                                              CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT              <  SRR4302540.2839462/94‑1 (MQ=60)

                                                                              CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT              <  SRR4302540.4515431/94‑1 (MQ=60)

                                                                              CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT              >  SRR4302540.7501808/1‑94 (MQ=60)

                                                                               ACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATC             >  SRR4302540.8623872/1‑94 (MQ=60)

                                                                               ACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATC             >  SRR4302540.1899797/1‑94 (MQ=60)

                                                                                CGCAAATACCCGCTGGCGAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCA            <  SRR4302540.9076450/94‑1 (MQ=60)

                                                                                 GCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAT           <  SRR4302540.5187763/94‑1 (MQ=60)

                                                                                 GCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAT           >  SRR4302540.6027147/1‑94 (MQ=60)

                                                                                  CAAATCCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATC          <  SRR4302540.1869624/94‑1 (MQ=60)

                                                                                  CAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATC          >  SRR4302540.4254255/1‑94 (MQ=60)

                                                                                  CAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATC          >  SRR4302540.1655503/1‑94 (MQ=60)

                                                                                  CAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATC          >  SRR4302540.6209957/1‑94 (MQ=60)

                                                                                   AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT         <  SRR4302540.2861083/94‑1 (MQ=60)

                                                                                   AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGGCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGCTCATCT         >  SRR4302540.6884935/1‑94 (MQ=60)

                                                                                     ATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTC       >  SRR4302540.2595956/1‑94 (MQ=60)

                                                                                     ATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTC       >  SRR4302540.5098599/1‑94 (MQ=60)

                                                                                     ATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTC       <  SRR4302540.2208739/94‑1 (MQ=60)

                                                                                      TACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCT      >  SRR4302540.8972544/1‑94 (MQ=60)

                                                                                      TACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCT      >  SRR4302540.8972543/1‑94 (MQ=60)

                                                                                        CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT    >  SRR4302540.8341495/1‑94 (MQ=60)

                                                                                        CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT    <  SRR4302540.3634988/94‑1 (MQ=60)

                                                                                        CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT    <  SRR4302540.4025462/94‑1 (MQ=60)

                                                                                         CCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTC   <  SRR4302540.10148645/94‑1 (MQ=60)

                                                                                          CGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC  <  SRR4302540.801757/94‑1 (MQ=60)

GGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCC  >  NC_000913/2442015‑2442198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`