Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,442,106	A→G	S28S (AGT→AGC)	b2325 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,442,106	0	A	G	100.0%	698.7 / NA	216	S28S (AGT→AGC)	b2325	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/104); total (112/104)

Only 100 of 221 total aligned reads displayed.

CTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT  >  NC_000913/2442017‑2442195

 tAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTgg                                                                                       <  1:3715501/93‑1 (MQ=255)

 tAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTgg                                                                                       >  2:5395507/1‑93 (MQ=255)

  aaCGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGc                                                                                      <  2:1374189/93‑1 (MQ=255)

  aaCGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGc                                                                                      <  1:3125428/93‑1 (MQ=255)

   aCGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCa                                                                                     <  1:582359/93‑1 (MQ=255)

   aCGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCa                                                                                     >  1:2959148/1‑93 (MQ=255)

   aCGGTCGTAGGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATCCCCGCTGGCa                                                                                     <  1:5880187/93‑1 (MQ=255)

     ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaaa                                                                                   >  1:5578697/1‑93 (MQ=255)

     ggTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCaaa                                                                                   <  1:4943206/93‑1 (MQ=255)

       tCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAaaca                                                                                 >  1:4573535/1‑93 (MQ=255)

         gTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAcacaac                                                                               >  1:2506529/1‑93 (MQ=255)

          tATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACt                                                                              >  1:928727/1‑93 (MQ=255)

              cACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatc                                                                          <  2:4771317/93‑1 (MQ=255)

               gccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatca                                                                         <  2:4667630/92‑1 (MQ=255)

               aCCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatca                                                                         >  1:1943103/1‑93 (MQ=255)

               aCCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatca                                                                         <  1:2601474/93‑1 (MQ=255)

                ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat                                                                        >  1:1650033/1‑93 (MQ=255)

                ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat                                                                        >  1:3294655/1‑93 (MQ=255)

                ccGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcat                                                                        >  1:4038459/1‑93 (MQ=255)

                 cGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcatc                                                                       >  2:2562395/1‑93 (MQ=255)

                 cGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcatc                                                                       <  2:4920725/93‑1 (MQ=255)

                  gCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACtcatcatca                                                                      <  2:4438171/93‑1 (MQ=255)

                   ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc                                                                     <  2:5706733/93‑1 (MQ=255)

                   ccTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAc                                                                     >  1:1240193/1‑93 (MQ=255)

                     tGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTg                                                                   >  2:1269374/1‑93 (MQ=255)

                     tGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTg                                                                   >  1:3882892/1‑93 (MQ=255)

                      gAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATCCCCGCTGGCAAACAACTCATCATCACTgg                                                                  <  2:198039/93‑1 (MQ=255)

                      gAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTgg                                                                  <  1:1344449/93‑1 (MQ=255)

                        gCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCa                                                                >  2:5985307/1‑93 (MQ=255)

                        gCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCa                                                                <  1:1156316/93‑1 (MQ=255)

                          ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg                                                              <  1:3868583/93‑1 (MQ=255)

                          ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg                                                              >  2:6045962/1‑93 (MQ=255)

                          ggAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATg                                                              <  2:1621498/93‑1 (MQ=255)

                           gAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATgg                                                             >  1:5057231/1‑93 (MQ=255)

                            aGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGt                                                            <  1:4250766/93‑1 (MQ=255)

                             gTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTc                                                           >  2:5024919/1‑93 (MQ=255)

                             gTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTc                                                           >  2:5459401/1‑93 (MQ=255)

                              tGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCa                                                          >  2:1762314/1‑93 (MQ=255)

                                gTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAc                                                        <  1:1407613/93‑1 (MQ=255)

                                gTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAc                                                        <  1:261625/93‑1 (MQ=255)

                                 tcatcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAcc                                                       <  1:1012571/93‑1 (MQ=255)

                                  catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa                                                      >  2:1702419/1‑93 (MQ=255)

                                  catcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCa                                                      >  1:4837788/1‑93 (MQ=255)

                                   atccCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCAt                                                     <  1:744203/93‑1 (MQ=255)

                                   atcaCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGGCAAccca                                                     >  2:778014/1‑91 (MQ=255)

                                      accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  >  2:493332/1‑93 (MQ=255)

                                      accacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAcc                                                  >  2:1484862/1‑93 (MQ=255)

                                        cacTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGt                                                <  1:5234858/93‑1 (MQ=255)

                                              ccAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAAACATATCGTCGATTa                                          >  2:662755/1‑93 (MQ=255)

                                               cAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTaa                                         <  2:20176/93‑1 (MQ=255)

                                               cAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTaa                                         <  2:3673587/93‑1 (MQ=255)

                                                aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        <  2:6235228/93‑1 (MQ=255)

                                                aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        <  1:6233015/93‑1 (MQ=255)

                                                aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        >  1:647606/1‑93 (MQ=255)

                                                aGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAt                                        <  1:4381719/93‑1 (MQ=255)

                                                 gTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATg                                       <  1:432441/93‑1 (MQ=255)

                                                 gTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATg                                       >  2:4106960/1‑93 (MQ=255)

                                                 gTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATg                                       >  1:3809925/1‑93 (MQ=255)

                                                  ttCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGc                                      <  2:2760030/93‑1 (MQ=255)

                                                    cTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCa                                    >  1:4782179/1‑93 (MQ=255)

                                                    cTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCa                                    >  1:1893749/1‑93 (MQ=255)

                                                        gATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAt                                <  2:2334379/93‑1 (MQ=255)

                                                          tGGCTAATGTCAGGTGGGCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATgg                              >  2:3389782/1‑92 (MQ=255)

                                                          tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc                              >  2:3424026/1‑93 (MQ=255)

                                                          tGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGc                              >  2:3089644/1‑93 (MQ=255)

                                                           ggCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCg                             >  1:6021930/1‑93 (MQ=255)

                                                             cTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTg                           >  2:4312674/1‑93 (MQ=255)

                                                             cTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTg                           >  2:3946239/1‑93 (MQ=255)

                                                              tAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGa                          >  2:3781735/1‑93 (MQ=255)

                                                                aTGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGCtt                        >  1:4433202/1‑93 (MQ=255)

                                                                aTGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAtt                        >  2:2904203/1‑93 (MQ=255)

                                                                aTGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAtt                        >  1:5285035/1‑93 (MQ=255)

                                                                 tGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTc                       <  1:2353060/93‑1 (MQ=255)

                                                                  gTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCa                      >  1:2008100/1‑93 (MQ=255)

                                                                    cAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa                    <  1:4162542/93‑1 (MQ=255)

                                                                    cAGCTGGCCACGCAAATACCCGCTCGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCaaa                    <  1:2016479/93‑1 (MQ=255)

                                                                     aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc                   <  2:19070/93‑1 (MQ=255)

                                                                     aGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAc                   >  1:6090903/1‑93 (MQ=255)

                                                                      ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt                  <  2:2116339/93‑1 (MQ=255)

                                                                      ggTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACt                  >  1:5181337/1‑93 (MQ=255)

                                                                       gTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTc                 <  1:2326265/93‑1 (MQ=255)

                                                                       gTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTc                 <  2:120631/93‑1 (MQ=255)

                                                                        tgaccACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAGACTcc                <  2:4981865/90‑1 (MQ=255)

                                                                        tGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTcc                <  2:351903/93‑1 (MQ=255)

                                                                        tGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTcc                <  2:1520734/93‑1 (MQ=255)

                                                                         ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               <  2:1162981/93‑1 (MQ=255)

                                                                         ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               >  2:3470269/1‑93 (MQ=255)

                                                                         ggCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcg               >  1:2251053/1‑93 (MQ=255)

                                                                          gCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgc              >  1:3531118/1‑93 (MQ=255)

                                                                          gCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgc              <  1:3465622/93‑1 (MQ=255)

                                                                           ccACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCcgcg             <  2:5270202/93‑1 (MQ=255)

                                                                            cACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGa            <  2:3243847/93‑1 (MQ=255)

                                                                            cACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGa            >  2:2314457/1‑93 (MQ=255)

                                                                             aCGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGat           >  2:713949/1‑93 (MQ=255)

                                                                                 aaaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatcatc       >  1:22162/1‑93 (MQ=255)

                                                                                 aaaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGatcatc       <  1:4683488/93‑1 (MQ=255)

                                                                                 aaaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGAGatcatc       >  2:1575043/1‑93 (MQ=255)

                                                                                  aaTACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtct      >  1:4112629/1‑93 (MQ=255)

                                                                                    tACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCAtcttc    >  1:5780149/1‑93 (MQ=255)

                                                                                      cccGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATcttctt  >  1:5364974/1‑93 (MQ=255)

CTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT  >  NC_000913/2442017‑2442195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCCT  >  NC_000913/2442013‑2442199

CTGGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCG                                                                                               <  SRR4302533.5787812/94‑1 (MQ=60)

 TGGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGC                                                                                              >  SRR4302533.3279586/1‑94 (MQ=60)

 TGGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGC                                                                                              <  SRR4302533.2930825/94‑1 (MQ=60)

     TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC                                                                                          <  SRR4302533.2618799/94‑1 (MQ=60)

     TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC                                                                                          <  SRR4302533.3738311/94‑1 (MQ=60)

     TAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGC                                                                                          >  SRR4302533.4667742/1‑94 (MQ=60)

      AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACGCGCTGGCA                                                                                         >  SRR4302533.5303492/1‑94 (MQ=60)

      AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCA                                                                                         <  SRR4302533.3144636/94‑1 (MQ=60)

      AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCA                                                                                         >  SRR4302533.2977233/1‑94 (MQ=60)

      AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCA                                                                                         <  SRR4302533.3462636/94‑1 (MQ=60)

      AACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCA                                                                                         <  SRR4302533.3993714/94‑1 (MQ=60)

       ACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAA                                                                                        <  SRR4302533.585790/94‑1 (MQ=60)

       ACGGTCGTAGGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATCCCCGCTGGCAA                                                                                        <  SRR4302533.5915723/94‑1 (MQ=60)

        CGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAA                                                                                       >  SRR4302533.5612411/1‑94 (MQ=60)

         GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC                                                                                      <  SRR4302533.4973130/94‑1 (MQ=60)

         GGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAAC                                                                                      >  SRR4302533.2070284/1‑94 (MQ=60)

          GTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACA                                                                                     >  SRR4302533.4601252/1‑94 (MQ=60)

          GTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACA                                                                                     <  SRR4302533.1949588/94‑1 (MQ=60)

            CGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCACACAAC                                                                                   >  SRR4302533.2521980/1‑94 (MQ=60)

            CGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACACAAATACCCGCTGGCAAACAAC                                                                                   >  SRR4302533.2035329/1‑94 (MQ=60)

             GTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACT                                                                                  >  SRR4302533.934180/1‑94 (MQ=60)

                TGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCAT                                                                               <  SRR4302533.6062415/94‑1 (MQ=60)

                  CACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCA                                                                             >  SRR4302533.1954956/1‑94 (MQ=60)

                   ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT                                                                            >  SRR4302533.3314988/1‑94 (MQ=60)

                   ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT                                                                            <  SRR4302533.2617456/94‑1 (MQ=60)

                   ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT                                                                            >  SRR4302533.4063033/1‑94 (MQ=60)

                   ACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCAT                                                                            >  SRR4302533.1660030/1‑94 (MQ=60)

                    CCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATC                                                                           <  SRR4302533.2356352/94‑1 (MQ=60)

                     CGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCA                                                                          >  SRR4302533.4717362/1‑94 (MQ=60)

                     CGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCA                                                                          <  SRR4302533.1387519/94‑1 (MQ=60)

                      GCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAC                                                                         >  SRR4302533.1247603/1‑94 (MQ=60)

                      GCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCAC                                                                         >  SRR4302533.1553159/1‑94 (MQ=60)

                       CCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACT                                                                        <  SRR4302533.4233221/94‑1 (MQ=60)

                        CTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTG                                                                       >  SRR4302533.3906586/1‑94 (MQ=60)

                        CTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTG                                                                       <  SRR4302533.5620754/94‑1 (MQ=60)

                         TGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGG                                                                      >  SRR4302533.1243978/1‑94 (MQ=60)

                          GAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGC                                                                     <  SRR4302533.1352539/94‑1 (MQ=60)

                          GAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAACACCAGCTGGCAAACAACTCATCATCACTGGC                                                                     >  SRR4302533.1992478/1‑94 (MQ=60)

                            GCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCAT                                                                   <  SRR4302533.3864825/94‑1 (MQ=60)

                            GCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCAT                                                                   <  SRR4302533.3864826/94‑1 (MQ=60)

                            GCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCAT                                                                   <  SRR4302533.1163251/94‑1 (MQ=60)

                              GGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGG                                                                 >  SRR4302533.4575793/1‑94 (MQ=60)

                              GGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGG                                                                 >  SRR4302533.5087795/1‑94 (MQ=60)

                              GGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGG                                                                 <  SRR4302533.3892202/94‑1 (MQ=60)

                                AGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTC                                                               <  SRR4302533.4276412/94‑1 (MQ=60)

                                  TGNTCANNCCCACTTTCCAGTNNTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAA                                                             <  SRR4302533.5496624/94‑1 (MQ=60)

                                    GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC                                                           <  SRR4302533.263211/94‑1 (MQ=60)

                                    GTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACC                                                           <  SRR4302533.1416124/94‑1 (MQ=60)

                                     TCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCA                                                          <  SRR4302533.1018496/94‑1 (MQ=60)

                                     TCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCA                                                          >  SRR4302533.4131602/1‑94 (MQ=60)

                                     TCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCA                                                          >  SRR4302533.4867108/1‑94 (MQ=60)

                                       ATCCCCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATA                                                        <  SRR4302533.748584/94‑1 (MQ=60)

                                        TCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATAC                                                       <  SRR4302533.1003113/94‑1 (MQ=60)

                                         CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACC                                                      <  SRR4302533.6323387/94‑1 (MQ=60)

                                         CACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGCCAACCATACC                                                      >  SRR4302533.498988/1‑94 (MQ=60)

                                           CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                    >  SRR4302533.3904380/1‑94 (MQ=60)

                                           CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                    <  SRR4302533.4617106/94‑1 (MQ=60)

                                           CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                    >  SRR4302533.4814995/1‑94 (MQ=60)

                                           CCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGT                                                    >  SRR4302533.3285721/1‑94 (MQ=60)

                                            CACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTC                                                   <  SRR4302533.5266336/94‑1 (MQ=60)

                                            CACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTC                                                   <  SRR4302533.258656/94‑1 (MQ=60)

                                              CTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGA                                                 <  SRR4302533.2440656/94‑1 (MQ=60)

                                               TTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGAT                                                >  SRR4302533.4376947/1‑94 (MQ=60)

                                                 TCCAGTTCTGCGATGGCTAATGTCAGGTGTCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTA                                              <  SRR4302533.4274300/94‑1 (MQ=60)

                                                   CAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAAT                                            >  SRR4302533.651421/1‑94 (MQ=60)

                                                    AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                           >  SRR4302533.5145157/1‑94 (MQ=60)

                                                    AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                           <  SRR4302533.6270338/94‑1 (MQ=60)

                                                    AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                           <  SRR4302533.4450207/94‑1 (MQ=60)

                                                    AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                           <  SRR4302533.4408175/94‑1 (MQ=60)

                                                    AGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATG                                           >  SRR4302533.3833229/1‑94 (MQ=60)

                                                     GTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGC                                          >  SRR4302533.5904800/1‑94 (MQ=60)

                                                     GTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGC                                          <  SRR4302533.435016/94‑1 (MQ=60)

                                                     GTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGC                                          <  SRR4302533.5092489/94‑1 (MQ=60)

                                                     GTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGC                                          >  SRR4302533.1813302/1‑94 (MQ=60)

                                                       TCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCA                                        >  SRR4302533.1905310/1‑94 (MQ=60)

                                                       TCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCA                                        >  SRR4302533.4811154/1‑94 (MQ=60)

                                                        CTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAG                                       <  SRR4302533.1623605/94‑1 (MQ=60)

                                                         TGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGA                                      <  SRR4302533.5970835/94‑1 (MQ=60)

                                                           CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT                                    <  SRR4302533.2326449/94‑1 (MQ=60)

                                                           CGATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAAT                                    >  SRR4302533.1261452/1‑94 (MQ=60)

                                                            GATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATG                                   <  SRR4302533.311831/94‑1 (MQ=60)

                                                            GATGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATG                                   <  SRR4302533.1156657/94‑1 (MQ=60)

                                                              TGTCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCG                                 <  SRR4302533.4907726/94‑1 (MQ=60)

                                                              TGGCTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCG                                 >  SRR4302533.6058426/1‑94 (MQ=60)

                                                                 CTAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGA                              >  SRR4302533.523704/1‑94 (MQ=60)

                                                                  TAATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGAT                             >  SRR4302533.2258223/1‑94 (MQ=60)

                                                                   AATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGCTT                            >  SRR4302533.4460005/1‑94 (MQ=60)

                                                                   AATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATT                            >  SRR4302533.5316693/1‑94 (MQ=60)

                                                                    ATGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTC                           <  SRR4302533.3670055/94‑1 (MQ=60)

                                                                     TGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCA                          >  SRR4302533.2020471/1‑94 (MQ=60)

                                                                     TGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCA                          >  SRR4302533.2020470/1‑94 (MQ=60)

                                                                     TGTCAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCA                          <  SRR4302533.2367613/94‑1 (MQ=60)

                                                                        CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC                       >  SRR4302533.6127716/1‑94 (MQ=60)

                                                                        CAGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC                       <  SRR4302533.4187764/94‑1 (MQ=60)

                                                                        CAGCTGGCCACGCAAATACCCGCTCGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAAC                       <  SRR4302533.2028904/94‑1 (MQ=60)

                                                                         AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT                      <  SRR4302533.3525796/94‑1 (MQ=60)

                                                                         AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT                      >  SRR4302533.4163874/1‑94 (MQ=60)

                                                                         AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT                      >  SRR4302533.5212624/1‑94 (MQ=60)

                                                                         AGGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACT                      >  SRR4302533.707689/1‑94 (MQ=60)

                                                                          GGTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTC                     >  SRR4302533.2881835/1‑94 (MQ=60)

                                                                           GTGGCCACGCAAATGCCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCC                    <  SRR4302533.895094/94‑1 (MQ=60)

                                                                           GTGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCT                    <  SRR4302533.2340666/94‑1 (MQ=60)

                                                                            TGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCTACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                   <  SRR4302533.3406911/94‑1 (MQ=60)

                                                                            TGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                   <  SRR4302533.2550678/94‑1 (MQ=60)

                                                                            TGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                   >  SRR4302533.2264968/1‑94 (MQ=60)

                                                                            GGGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCG                   <  SRR4302533.557581/94‑1 (MQ=60)

                                                                             GGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGC                  >  SRR4302533.3552879/1‑94 (MQ=60)

                                                                             GGCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGC                  <  SRR4302533.6190750/94‑1 (MQ=60)

                                                                              GCCACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCG                 <  SRR4302533.3487012/94‑1 (MQ=60)

                                                                                CACGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGAT               <  SRR4302533.430891/94‑1 (MQ=60)

                                                                                  CGCAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCA             <  SRR4302533.5836737/94‑1 (MQ=60)

                                                                                    CAAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATC           >  SRR4302533.22309/1‑94 (MQ=60)

                                                                                     AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCATCCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT          <  SRR4302533.5342603/94‑1 (MQ=60)

                                                                                     AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT          >  SRR4302533.4137623/1‑94 (MQ=60)

                                                                                     AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT          <  SRR4302533.6101469/94‑1 (MQ=60)

                                                                                     AAATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCT          <  SRR4302533.4711863/94‑1 (MQ=60)

                                                                                       ATACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTC        >  SRR4302533.5815059/1‑94 (MQ=60)

                                                                                         ACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT      >  SRR4302533.5397203/1‑94 (MQ=60)

                                                                                         ACCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTT      <  SRR4302533.3822670/94‑1 (MQ=60)

                                                                                          CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT     >  SRR4302533.5324071/1‑94 (MQ=60)

                                                                                          CCCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTT     >  SRR4302533.2083461/1‑94 (MQ=60)

                                                                                           CCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTC    >  SRR4302533.5759335/1‑94 (MQ=60)

                                                                                           CCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTC    >  SRR4302533.6086702/1‑94 (MQ=60)

                                                                                           CCGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTC    <  SRR4302533.5030085/94‑1 (MQ=60)

                                                                                            CGCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCAAGAATGCGTGATTCAAACTCCGCGATGATCTTCTTTCC   >  SRR4302533.3020215/1‑94 (MQ=60)

                                                                                             GCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCCT  >  SRR4302533.1832695/1‑94 (MQ=60)

                                                                                             GCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCCT  >  SRR4302533.3554244/1‑94 (MQ=60)

                                                                                             GCTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTCCTTTCCT  <  SRR4302533.460181/94‑1 (MQ=60)

CTGGCTAACGGTCGTATGCACCGCCTGAGCGGAGTGGTCATCACCACTTTCCAGTTCTGCGATGGCTAATGTCAGGTGGCCACGCAAATACCCACTGGCAAACAACTCATCATCACTGGCATGGTCAACCATACCGTCGATTAATGCCAGAATGCGTGATTCAAACTCCGCGATCATCTTCTTTCCT  >  NC_000913/2442013‑2442199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`