Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,515,312 |
T→C |
M181V (ATG→GTG) |
b2395 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,515,312 | 0 | T | C | 99.7%
| 1029.7
/ ‑4.7
| 315 | M181V (ATG→GTG) | b2395 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (144/170); minor base G (0/1); total (144/171) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 |
Only 100 of 337 total aligned reads displayed.
CTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTA > NC_000913/2515222‑2515401
|
ctTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgt < 2:4443126/93‑1 (MQ=255)
ctTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgt < 2:49926/93‑1 (MQ=255)
tttGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgtt > 1:9027621/1‑93 (MQ=255)
ttGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgttg > 1:2552301/1‑93 (MQ=255)
ttGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgttg < 2:6076143/93‑1 (MQ=255)
tGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAcgttgt < 1:4314477/93‑1 (MQ=255)
gCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTa < 2:9814751/93‑1 (MQ=255)
cccAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTaa > 2:9058755/1‑93 (MQ=255)
cAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAt > 1:1732079/1‑93 (MQ=255)
aaCGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATc < 2:1868164/93‑1 (MQ=255)
aaCGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATc < 2:6436979/93‑1 (MQ=255)
aaCGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATc < 2:8157629/93‑1 (MQ=255)
cgacgGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAg < 2:2287438/93‑1 (MQ=255)
gacgGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGc < 2:6257689/93‑1 (MQ=255)
acgGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGca < 2:8808810/93‑1 (MQ=255)
ggAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGcaca < 2:8281397/93‑1 (MQ=255)
ggAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGcaca < 2:7085784/93‑1 (MQ=255)
gCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCg > 2:3213804/1‑93 (MQ=255)
gATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGt < 2:5558515/93‑1 (MQ=255)
gATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGt > 1:6123587/1‑93 (MQ=255)
atatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTg > 2:3624271/1‑93 (MQ=255)
atatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTg > 1:9406639/1‑93 (MQ=255)
atatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTg > 2:1123412/1‑93 (MQ=255)
atatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTg > 1:3464885/1‑93 (MQ=255)
tatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGa < 2:1666530/93‑1 (MQ=255)
tatCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGa > 2:8904975/1‑93 (MQ=255)
atCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGaa > 1:7885064/1‑93 (MQ=255)
cccTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGaaaa < 2:8553085/93‑1 (MQ=255)
cccTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGaaaa < 2:5114474/93‑1 (MQ=255)
cccTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGaaaa > 2:4635050/1‑93 (MQ=255)
ccTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAg < 1:1759617/93‑1 (MQ=255)
ccTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAg < 2:939062/93‑1 (MQ=255)
tGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTGAATCAGCACAGCGGTGAAAAGGc < 2:2659439/93‑1 (MQ=255)
tGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGCGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGc > 1:7267918/1‑93 (MQ=255)
gcgcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCt < 1:3052265/93‑1 (MQ=255)
cgcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCtt < 2:2793340/93‑1 (MQ=255)
cgcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCtt < 2:4872608/93‑1 (MQ=255)
gcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTa < 2:3685647/93‑1 (MQ=255)
gcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTa < 2:4145812/93‑1 (MQ=255)
gcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTa > 2:481446/1‑93 (MQ=255)
gcCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTa < 2:5436096/93‑1 (MQ=255)
cacaATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGc > 1:8990696/1‑93 (MQ=255)
cacaATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGc < 1:4500757/93‑1 (MQ=255)
aaTATCTGCGCAAAGTGGGGCCTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTACATCAGCACACAGGTGAAAAGGCTTAGCaaa > 1:4190160/1‑93 (MQ=255)
aaTATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCaaa > 1:4959400/1‑93 (MQ=255)
atatCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAAt < 1:9515589/93‑1 (MQ=255)
atatCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAAt < 2:75633/93‑1 (MQ=255)
tatCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATc > 1:2701952/1‑93 (MQ=255)
tCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCaa < 2:3727922/93‑1 (MQ=255)
tCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCaa > 2:1494148/1‑93 (MQ=255)
cTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAAc < 1:3715130/93‑1 (MQ=255)
cTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGACAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAAc < 2:9730179/93‑1 (MQ=255)
gcgcAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGa < 1:6866996/93‑1 (MQ=255)
gcgaAAAGTGGGGCCTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGa < 1:1365900/93‑1 (MQ=255)
gcAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGAcc > 1:8333667/1‑93 (MQ=255)
cAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCg > 1:572781/1‑93 (MQ=255)
aaaGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGt > 2:1374179/1‑93 (MQ=255)
aaGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTg > 1:8137733/1‑93 (MQ=255)
aGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGa < 1:2232176/93‑1 (MQ=255)
gTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaa < 2:10020508/93‑1 (MQ=255)
gggggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaaa < 2:7281843/92‑1 (MQ=255)
ggggACTTACAATCATGCGAGTGAGATAGTAGGAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaaaa < 1:6670758/93‑1 (MQ=255)
ggggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCGCAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaaaa < 2:5781623/93‑1 (MQ=255)
ggggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaaaa > 2:9541256/1‑93 (MQ=255)
ggggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGaaaa < 2:3668534/93‑1 (MQ=255)
gggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAt > 2:7893247/1‑93 (MQ=255)
ggACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATg > 2:6859735/1‑93 (MQ=255)
gACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATgg > 2:4286907/1‑93 (MQ=255)
aCTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATgga > 1:7322003/1‑92 (MQ=255)
cTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCa < 1:6647512/93‑1 (MQ=255)
tACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATc < 2:3898637/93‑1 (MQ=255)
tACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATc < 2:2057304/93‑1 (MQ=255)
aTCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCa > 1:518198/1‑93 (MQ=255)
aTCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCa < 2:5590263/93‑1 (MQ=255)
tCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAt > 1:354009/1‑93 (MQ=255)
tCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAt < 2:8997295/93‑1 (MQ=255)
tCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAt > 2:1581443/1‑93 (MQ=255)
tCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAt > 1:9711399/1‑93 (MQ=255)
cATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATc > 1:5941238/1‑93 (MQ=255)
tGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGc < 1:1657844/93‑1 (MQ=255)
gTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaa > 1:5464430/1‑93 (MQ=255)
gTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaa > 1:9779174/1‑93 (MQ=255)
tGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaaa > 1:7099557/1‑93 (MQ=255)
gagaTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaaaa < 2:5970481/93‑1 (MQ=255)
gagaTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaaaa > 1:2788354/1‑93 (MQ=255)
gaTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAgg < 1:6358061/93‑1 (MQ=255)
aTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGt < 1:799057/93‑1 (MQ=255)
aTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGt < 1:8676691/93‑1 (MQ=255)
aTAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGt < 1:532344/93‑1 (MQ=255)
agtagAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTgg < 2:3485661/93‑1 (MQ=255)
tagAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGat < 2:9449864/93‑1 (MQ=255)
agAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGata > 2:1044513/1‑93 (MQ=255)
gAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGatat > 1:660930/1‑93 (MQ=255)
aaaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATc > 2:8698197/1‑93 (MQ=255)
aaaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATc < 1:9092603/93‑1 (MQ=255)
aaaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATc > 2:7369621/1‑93 (MQ=255)
aaaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATc > 1:1454605/1‑93 (MQ=255)
aaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCt > 2:7946522/1‑93 (MQ=255)
aaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCt < 1:7372173/93‑1 (MQ=255)
aaaGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCt > 1:1052481/1‑93 (MQ=255)
|
CTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTA > NC_000913/2515222‑2515401
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGG > NC_000913/2515219‑2515405
|
TCTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCAC < SRR4302540.4002732/94‑1 (MQ=60)
CTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACG > SRR4302540.6555841/1‑94 (MQ=60)
CTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACG > SRR4302540.6600205/1‑94 (MQ=60)
CTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACG > SRR4302540.6397197/1‑94 (MQ=60)
CTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACG > SRR4302540.9161711/1‑94 (MQ=60)
TCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGT < SRR4302540.7981014/94‑1 (MQ=60)
TCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGT > SRR4302540.8076582/1‑94 (MQ=60)
CTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTT < SRR4302540.7385958/94‑1 (MQ=60)
CTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTT > SRR4302540.9450136/1‑94 (MQ=60)
CTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTT > SRR4302540.9135948/1‑94 (MQ=60)
TTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTG < SRR4302540.983313/94‑1 (MQ=60)
TTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTG > SRR4302540.5301052/1‑94 (MQ=60)
TTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTG > SRR4302540.2579809/1‑94 (MQ=60)
TTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTG < SRR4302540.2426392/94‑1 (MQ=60)
TGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTA < SRR4302540.4240564/94‑1 (MQ=60)
TGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTA < SRR4302540.4361450/94‑1 (MQ=60)
GCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAA > SRR4302540.6352850/1‑94 (MQ=60)
CCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAT > SRR4302540.2408071/1‑94 (MQ=60)
CCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAT < SRR4302540.59778/94‑1 (MQ=60)
CCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAT > SRR4302540.5597689/1‑94 (MQ=60)
CCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAT > SRR4302540.1750772/1‑94 (MQ=60)
CCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAAT > SRR4302540.1183922/1‑94 (MQ=60)
AACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCA > SRR4302540.5518941/1‑94 (MQ=60)
AACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCA < SRR4302540.6717199/94‑1 (MQ=60)
ACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAG < SRR4302540.4281731/94‑1 (MQ=60)
CGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGC > SRR4302540.6783065/1‑94 (MQ=60)
CGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGC < SRR4302540.4992939/94‑1 (MQ=60)
GACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCA < SRR4302540.865017/94‑1 (MQ=60)
ACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCAC < SRR4302540.5329389/94‑1 (MQ=60)
GGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAG > SRR4302540.3586497/1‑94 (MQ=60)
GGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAG > SRR4302540.9791374/1‑94 (MQ=60)
CGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGT > SRR4302540.6854722/1‑94 (MQ=60)
CGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGT < SRR4302540.2916896/94‑1 (MQ=60)
CGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGT > SRR4302540.6191787/1‑94 (MQ=60)
GATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTG > SRR4302540.9518509/1‑94 (MQ=60)
GATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTG > SRR4302540.3502597/1‑94 (MQ=60)
GATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTG > SRR4302540.3228029/1‑94 (MQ=60)
ATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGA < SRR4302540.2811618/94‑1 (MQ=60)
ATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGA < SRR4302540.315772/94‑1 (MQ=60)
ATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGA < SRR4302540.2811617/94‑1 (MQ=60)
TATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAA > SRR4302540.7977123/1‑94 (MQ=60)
TATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAA > SRR4302540.7301622/1‑94 (MQ=60)
TATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAA > SRR4302540.1513639/1‑94 (MQ=60)
ATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAA > SRR4302540.3060752/1‑94 (MQ=60)
TCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAA < SRR4302540.2215784/94‑1 (MQ=60)
CCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAG < SRR4302540.8845367/94‑1 (MQ=60)
CCTGCGCCACAATATGTACGCAAAGTGGGGACTTACAATCATGCGAGTGAGATATTAGAAAAGCACGTGGTAAATCAGCACAGCGGTGAAAAGG < SRR4302540.6505278/94‑1 (MQ=60)
CCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGG < SRR4302540.1778696/94‑1 (MQ=60)
CCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGG < SRR4302540.6505277/94‑1 (MQ=60)
CCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGG > SRR4302540.621600/1‑94 (MQ=60)
CTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGC > SRR4302540.8393276/1‑94 (MQ=60)
CTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGC > SRR4302540.8572005/1‑94 (MQ=60)
CTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGC < SRR4302540.7413747/94‑1 (MQ=60)
CTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGCGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGC > SRR4302540.7349014/1‑94 (MQ=60)
GCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTT < SRR4302540.3085756/94‑1 (MQ=60)
GCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTT < SRR4302540.9285262/94‑1 (MQ=60)
CGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTA > SRR4302540.3250985/1‑94 (MQ=60)
CGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGCGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTA > SRR4302540.5985546/1‑94 (MQ=60)
GCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAG < SRR4302540.834692/94‑1 (MQ=60)
CCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGC > SRR4302540.9098363/1‑94 (MQ=60)
CCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGAAGAAAAGCACGATGTAAATCAGCACAGCGGTGAACACGCTTAGC > SRR4302540.672583/1‑94 (MQ=60)
CCACAACATCTGCGCAAAGTGGGGACTTACTATCATGCGAGTGAGATAGTAGTAAAGCACGTTGTAAATTAGCACAGCGGGGAAATGGCTTAGC > SRR4302540.9098362/1‑94 (MQ=60)
CACAGTATCTGCGCAACGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCTGTGAAAAGGCTTAGCA < SRR4302540.4549547/94‑1 (MQ=60)
CACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCA < SRR4302540.4549548/94‑1 (MQ=60)
CACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCA < SRR4302540.7002193/94‑1 (MQ=60)
CACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCA < SRR4302540.7651286/94‑1 (MQ=60)
CACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCA > SRR4302540.6712084/1‑94 (MQ=60)
CAATATCTGCGCAAAGTGGGGCCTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTACATCAGCACACAGGTGAAAAGGCTTAGCAAA > SRR4302540.4235725/1‑94 (MQ=60)
CAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAA > SRR4302540.5013018/1‑94 (MQ=60)
ATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCTGTGAAAAGGCTTAGCAAATC < SRR4302540.9857843/94‑1 (MQ=60)
ATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATC > SRR4302540.2731105/1‑94 (MQ=60)
ATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATC > SRR4302540.9106341/1‑94 (MQ=60)
ATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATC < SRR4302540.9628288/94‑1 (MQ=60)
TATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCA < SRR4302540.1524649/94‑1 (MQ=60)
TCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAAC < SRR4302540.2758618/94‑1 (MQ=60)
TCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAAC < SRR4302540.7435430/94‑1 (MQ=60)
TCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAAC < SRR4302540.6030129/94‑1 (MQ=60)
CTGCTCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACG < SRR4302540.1731489/94‑1 (MQ=60)
CTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACG > SRR4302540.10048200/1‑94 (MQ=60)
CTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACG < SRR4302540.3755666/94‑1 (MQ=60)
TGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGA < SRR4302540.6633341/94‑1 (MQ=60)
GCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGAC < SRR4302540.5861021/94‑1 (MQ=60)
GCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGAC < SRR4302540.1380349/94‑1 (MQ=60)
GCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGAC < SRR4302540.6943117/94‑1 (MQ=60)
GCGAAAAGTGGGGCCTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGAC < SRR4302540.1380348/94‑1 (MQ=60)
CGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACC > SRR4302540.8430405/1‑94 (MQ=60)
CGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACC < SRR4302540.1774227/94‑1 (MQ=60)
CGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACC < SRR4302540.2164957/94‑1 (MQ=60)
CGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACC > SRR4302540.8157579/1‑94 (MQ=60)
CGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACC < SRR4302540.3577745/94‑1 (MQ=60)
GCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCG > SRR4302540.578998/1‑94 (MQ=60)
GCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCG > SRR4302540.578997/1‑94 (MQ=60)
GCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCG > SRR4302540.5340757/1‑94 (MQ=60)
CAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACACCGGCGAAAAGGCTTAGCAAATCAACGACCGC > SRR4302540.1766739/1‑94 (MQ=60)
CAAAGTGGGGACTTACAATCATGCGAGCGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAACAAATCAACGACCGT > SRR4302540.1766741/1‑94 (MQ=60)
AAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTG < SRR4302540.9107985/94‑1 (MQ=60)
AAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTG > SRR4302540.8232183/1‑94 (MQ=60)
AAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTG > SRR4302540.4873006/1‑94 (MQ=60)
AAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTG > SRR4302540.9547656/1‑94 (MQ=60)
AGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAA < SRR4302540.2256204/94‑1 (MQ=60)
GGTGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAT < SRR4302540.10034263/94‑1 (MQ=60)
GGGGACTTACAATCATGCTAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAT > SRR4302540.719077/1‑94 (MQ=60)
GGGGACTTACAATCATGCGAGTGAGATAGTAGGAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAT < SRR4302540.6744466/94‑1 (MQ=60)
GGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAT < SRR4302540.408748/94‑1 (MQ=60)
GGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAAT < SRR4302540.7957348/94‑1 (MQ=60)
GACTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGA > SRR4302540.7403781/1‑94 (MQ=60)
CTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCAT > SRR4302540.9527185/1‑94 (MQ=60)
CTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCAT < SRR4302540.6721053/94‑1 (MQ=60)
CTTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCAT > SRR4302540.2713351/1‑94 (MQ=60)
TTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATC < SRR4302540.805982/94‑1 (MQ=60)
TTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATC > SRR4302540.7346040/1‑94 (MQ=60)
TTACAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATC > SRR4302540.8846643/1‑94 (MQ=60)
TACAAGCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCC < SRR4302540.9675081/94‑1 (MQ=60)
CAATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGC < SRR4302540.5169083/94‑1 (MQ=60)
AATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCA > SRR4302540.523754/1‑94 (MQ=60)
AATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCA > SRR4302540.9871376/1‑94 (MQ=60)
AATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCA > SRR4302540.7823110/1‑94 (MQ=60)
ATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAT > SRR4302540.9825530/1‑94 (MQ=60)
ATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAT > SRR4302540.736451/1‑94 (MQ=60)
ATCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCAT > SRR4302540.357639/1‑94 (MQ=60)
TCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATC > SRR4302540.6006915/1‑94 (MQ=60)
TCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATC < SRR4302540.3961634/94‑1 (MQ=60)
TCATGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATC > SRR4302540.4870353/1‑94 (MQ=60)
CACGCCAGTGACATAGAAGAAAAACACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCG < SRR4302540.8396169/94‑1 (MQ=60)
TGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCC < SRR4302540.1675909/94‑1 (MQ=60)
TGCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCC < SRR4302540.1675910/94‑1 (MQ=60)
GCGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG > SRR4302540.6853142/1‑94 (MQ=60)
CGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGA < SRR4302540.9177376/94‑1 (MQ=60)
CGAGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGA < SRR4302540.4509244/94‑1 (MQ=60)
AGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAA > SRR4302540.9893797/1‑94 (MQ=60)
AGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAA > SRR4302540.5524572/1‑94 (MQ=60)
AGTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAA > SRR4302540.5524573/1‑94 (MQ=60)
GTGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAA > SRR4302540.7178555/1‑94 (MQ=60)
TGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAA > SRR4302540.2818465/1‑94 (MQ=60)
TGAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAA > SRR4302540.8094898/1‑94 (MQ=60)
TAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAG < SRR4302540.3571102/94‑1 (MQ=60)
GAGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAG < SRR4302540.8408160/94‑1 (MQ=60)
AGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGG < SRR4302540.917905/94‑1 (MQ=60)
AGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGG < SRR4302540.1329955/94‑1 (MQ=60)
AGATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGG > SRR4302540.3606444/1‑94 (MQ=60)
GATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGT < SRR4302540.6428863/94‑1 (MQ=60)
ATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTG < SRR4302540.807540/94‑1 (MQ=60)
ATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTG < SRR4302540.538097/94‑1 (MQ=60)
ATAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTG < SRR4302540.8777464/94‑1 (MQ=60)
TAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGG > SRR4302540.7044049/1‑94 (MQ=60)
TAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGG < SRR4302540.6741795/94‑1 (MQ=60)
TAGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGG > SRR4302540.5066325/1‑94 (MQ=60)
AGTAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGA > SRR4302540.4148115/1‑94 (MQ=60)
TAGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATA > SRR4302540.9416982/1‑94 (MQ=60)
AGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATAT > SRR4302540.668006/1‑94 (MQ=60)
AGAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATAT < SRR4302540.1645895/94‑1 (MQ=60)
GAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATC > SRR4302540.1470424/1‑94 (MQ=60)
GAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATC > SRR4302540.1470426/1‑94 (MQ=60)
GAAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATC < SRR4302540.1999826/94‑1 (MQ=60)
AAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCT > SRR4302540.1063192/1‑94 (MQ=60)
AAAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCT < SRR4302540.9201844/94‑1 (MQ=60)
AAAGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTT < SRR4302540.7454349/94‑1 (MQ=60)
AGCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTA < SRR4302540.6040470/94‑1 (MQ=60)
GCACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAG < SRR4302540.2730363/94‑1 (MQ=60)
CACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGC < SRR4302540.1348978/94‑1 (MQ=60)
ACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAACAGGTGGATATCTTTAGCG > SRR4302540.3981819/1‑94 (MQ=60)
ACGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCA < SRR4302540.2265640/94‑1 (MQ=60)
CGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGG < SRR4302540.7997018/94‑1 (MQ=60)
CGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGG > SRR4302540.5967840/1‑94 (MQ=60)
CGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGG < SRR4302540.8990302/94‑1 (MQ=60)
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TCTCTTTGCCCAACGACGGAGCGATATCCCTGCGCCACAATATCTGCGCAAAGTGGGGACTTACAATCATGCGAGTGAGATAGTAGAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGG > NC_000913/2515219‑2515405
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
