Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,519,341 |
A→G |
noncoding (69/76 nt) |
lysV → |
tRNA‑Lys |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,519,341 | 0 | A | G | 99.1%
| 549.5
/ ‑5.6
| 221 | noncoding (69/76 nt) | lysV | tRNA‑Lys |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (121/96); total (122/99) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
TCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCG > NC_000913/2519251‑2519430
|
tCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGcc > 2:9937997/1‑93 (MQ=37)
cccGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGccc > 2:2239781/1‑93 (MQ=37)
ccGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCcca > 2:4755601/1‑93 (MQ=37)
gTCATCACCCACCACTTCGGGTCGTTAGCGCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCccacc > 2:6222988/1‑93 (MQ=255)
tcatcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCccacca > 1:9429406/1‑93 (MQ=37)
tcatcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCccacca > 2:4737691/1‑93 (MQ=37)
tcatcaCCCACCACTTCGGGTCGCCAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCccacca > 2:8671451/1‑93 (MQ=255)
catcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCaa < 2:874325/93‑1 (MQ=255)
catcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCaa > 1:4937737/1‑93 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAt < 2:3082028/93‑1 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAt > 1:5603518/1‑93 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAt < 1:5272855/93‑1 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAt < 2:9126510/93‑1 (MQ=255)
tcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATg > 1:6830628/1‑93 (MQ=255)
tcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATg > 1:6830630/1‑93 (MQ=255)
cccaccACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaa < 2:1124412/93‑1 (MQ=255)
cccaccACTTCGGGTCGTCAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaa < 1:2387765/93‑1 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa > 1:3185352/1‑93 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa < 1:8537215/93‑1 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa < 2:3363433/93‑1 (MQ=255)
accacTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTacaaa > 2:5091934/1‑93 (MQ=255)
cacTTCGGTTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAg < 2:5925005/93‑1 (MQ=255)
cacTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAg < 2:1748915/93‑1 (MQ=255)
acTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgc > 1:938611/1‑93 (MQ=25)
acTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgc < 1:8613844/93‑1 (MQ=25)
acTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAga > 2:2174295/1‑92 (MQ=25)
cTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgcg < 1:5890934/93‑1 (MQ=21)
cTTCGGGTCGTCAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgcg > 2:4038266/1‑93 (MQ=255)
tCGGGTTGTTAGCTCAGTTGGTAAGGCCGGTTGA‑TTTTAAACAAATGGTCCGAGGTTCCAAACCTGCACGGCCCACCAATGTAAAAAAGCGcc < 2:1317460/93‑1 (MQ=2)
cGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGccc < 2:5219238/93‑1 (MQ=14)
cGGGTCGTCAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGccc < 1:1143760/93‑1 (MQ=9)
ttGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGTTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTa < 1:5038055/93‑1 (MQ=9)
tGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAc > 1:4179176/1‑93 (MQ=12)
gT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTa < 1:3917725/93‑1 (MQ=18)
t‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 2:7489428/93‑1 (MQ=18)
t‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 2:2908198/93‑1 (MQ=18)
t‑AGAGCAGTGGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:4793295/93‑1 (MQ=16)
agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATc < 2:328405/93‑1 (MQ=18)
agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATc < 1:8374063/93‑1 (MQ=18)
agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAACAGCGCCCTAAAGGGGCTTTTTTACTATCTg > 2:2543955/1‑93 (MQ=11)
agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTg < 2:6909205/93‑1 (MQ=21)
gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGc > 1:4724061/1‑93 (MQ=18)
aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGa > 1:6487152/1‑93 (MQ=18)
aGTTGACTTTGAATCAATTGGACGCAGGTACGAATCCTGCACGTCCCACCAAGGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGa < 1:7604227/93‑1 (MQ=11)
gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGGCCTAAAGGCGCTTGTTTACTATCTGCGAt > 1:9002767/1‑93 (MQ=255)
gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAt > 2:3798569/1‑93 (MQ=18)
gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAt > 1:1324188/1‑93 (MQ=18)
gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAt > 1:6658078/1‑93 (MQ=18)
ttGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATa > 1:797068/1‑93 (MQ=18)
tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAc > 1:1058360/1‑93 (MQ=18)
tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAc < 1:986089/93‑1 (MQ=18)
gACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACt < 2:8494039/93‑1 (MQ=21)
aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAACAAAGCGCCCTAAAGGAGCTTTTTTACTATCTGCGATCCTc > 1:1520431/1‑93 (MQ=11)
cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCa < 1:7081399/93‑1 (MQ=18)
ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGGCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaa < 1:9130124/93‑1 (MQ=255)
tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa > 1:1898895/1‑93 (MQ=18)
tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa > 2:9534562/1‑93 (MQ=18)
tttAATCAATTGGTCGCAGGTGCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa < 2:7939763/93‑1 (MQ=16)
tttAATCAATGGGTAGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa < 2:1464613/93‑1 (MQ=255)
tAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa < 1:8095748/93‑1 (MQ=21)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 2:6255305/93‑1 (MQ=21)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 1:5950054/93‑1 (MQ=18)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt > 2:6355752/1‑93 (MQ=18)
aTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAtt > 1:1765634/1‑93 (MQ=18)
cAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCg > 1:2334720/1‑93 (MQ=18)
cAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCg > 1:6202531/1‑93 (MQ=18)
aaTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa < 2:10014472/93‑1 (MQ=21)
aaTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 2:5858213/1‑93 (MQ=18)
aTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaa > 2:2611144/1‑93 (MQ=18)
ttGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAc > 1:6256281/1‑93 (MQ=18)
ttGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAc < 2:1673249/93‑1 (MQ=18)
tGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAcc < 2:7987094/93‑1 (MQ=21)
ggTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCt < 2:3623092/93‑1 (MQ=18)
cGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca > 2:6014044/1‑93 (MQ=18)
cAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcacc > 1:4430159/1‑91 (MQ=16)
aGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca < 1:2469015/93‑1 (MQ=18)
aGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca < 2:9091637/93‑1 (MQ=18)
aGGTTCGAATCCTGCACGCCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca < 2:8677863/93‑1 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag < 2:677202/93‑1 (MQ=18)
ggTTCGAATCCGGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag < 1:3717047/93‑1 (MQ=16)
gTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAgg > 1:7665542/1‑93 (MQ=18)
gTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAgg > 2:3472466/1‑93 (MQ=18)
ttCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGt > 2:6195287/1‑93 (MQ=18)
tCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGtt < 1:7240979/93‑1 (MQ=18)
tCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGtt < 1:4860128/93‑1 (MQ=18)
cGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGttt > 2:8662976/1‑93 (MQ=18)
aaTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgg > 2:7265788/1‑92 (MQ=16)
aaTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttga < 1:3475691/93‑1 (MQ=21)
aTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgag < 1:460073/93‑1 (MQ=18)
aTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgag > 1:2045554/1‑93 (MQ=18)
tCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagt > 1:4313522/1‑93 (MQ=18)
ccTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagtt < 1:2697119/93‑1 (MQ=18)
ccTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagtt > 2:7954666/1‑93 (MQ=18)
cTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTa > 2:6683563/1‑50 (MQ=255)
cTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttg > 1:7367548/1‑93 (MQ=18)
tGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 2:2003382/93‑1 (MQ=18)
tGCACGGCACACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 2:9646331/93‑1 (MQ=16)
gCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag < 2:7648966/93‑1 (MQ=18)
gCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag < 1:6951251/93‑1 (MQ=18)
aCGGCCAACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgcg > 2:7204169/1‑93 (MQ=16)
|
TCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCG > NC_000913/2519251‑2519430
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC > NC_000913/2519248‑2519434
|
CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGG > SRR4302540.5299820/1‑94 (MQ=21)
CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGG > SRR4302540.8581874/1‑94 (MQ=21)
ATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCC > SRR4302540.5402264/1‑94 (MQ=20)
GTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCA > SRR4302540.9541429/1‑94 (MQ=20)
TCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGATTTTTAATCACTTGGTCGCAGGTTCGAATCATGCACGGCCCACCCA > SRR4302540.4991009/1‑94 (MQ=17)
TCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAA > SRR4302540.4991010/1‑94 (MQ=23)
CATCCGCCACCACTTCTGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAT < SRR4302540.4308885/94‑1 (MQ=8)
CATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAT < SRR4302540.4308886/94‑1 (MQ=25)
CATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAT > SRR4302540.5665177/1‑94 (MQ=25)
CATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAT < SRR4302540.6790373/94‑1 (MQ=25)
ATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATG < SRR4302540.5330411/94‑1 (MQ=28)
ATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATG > SRR4302540.6906261/1‑94 (MQ=28)
ATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATG > SRR4302540.6906262/1‑94 (MQ=28)
ATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATG > SRR4302540.6906263/1‑94 (MQ=28)
acacccccccccttcGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGT < SRR4302540.3564060/79‑1 (MQ=0)
TCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACTACCCACAAATGA > SRR4302540.9206505/1‑94 (MQ=19)
TCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGT > SRR4302540.7983299/1‑94 (MQ=30)
TCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGT > SRR4302540.1441752/1‑94 (MQ=30)
ACACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGT < SRR4302540.9998245/94‑1 (MQ=30)
ACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAA > SRR4302540.478600/1‑94 (MQ=30)
CCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA > SRR4302540.3219960/1‑94 (MQ=28)
CCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA > SRR4302540.2315529/1‑94 (MQ=28)
CCCACCACTTCGGGTCGTCAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA < SRR4302540.2413501/94‑1 (MQ=26)
CCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAA < SRR4302540.8636418/94‑1 (MQ=25)
CCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGGTCGAATCCTGCACGGCCCACCAATGTAAAA > SRR4302540.4005910/1‑94 (MQ=24)
ACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAA > SRR4302540.6179576/1‑94 (MQ=20)
CACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGC < SRR4302540.1265123/94‑1 (MQ=12)
CACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGC > SRR4302540.948433/1‑94 (MQ=12)
ACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTCATCAATTAGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAACAAAGCG > SRR4302540.6332231/1‑94 (MQ=8)
ACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCG < SRR4302540.8713932/94‑1 (MQ=10)
CTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGC < SRR4302540.5956013/94‑1 (MQ=7)
CTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGC > SRR4302540.812486/1‑94 (MQ=7)
CTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGC > SRR4302540.1899142/1‑94 (MQ=7)
CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCT < SRR4302540.7022745/94‑1 (MQ=0)
CGGGTCGTCAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCT < SRR4302540.1155711/94‑1 (MQ=0)
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTA > SRR4302540.4403730/1‑94 (MQ=0)
GGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAA > SRR4302540.5107978/1‑94 (MQ=0)
GTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAA > SRR4302540.1609172/1‑94 (MQ=0)
GTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAA < SRR4302540.7681906/94‑1 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAG > SRR4302540.9261441/1‑94 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302540.4492308/94‑1 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302540.385767/94‑1 (MQ=0)
GCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302540.9289195/94‑1 (MQ=0)
CGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGG > SRR4302540.8890547/1‑94 (MQ=0)
CGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGG > SRR4302540.2604618/1‑94 (MQ=0)
CGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGG > SRR4302540.204363/1‑94 (MQ=0)
GTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGC > SRR4302540.10068153/1‑94 (MQ=0)
GTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCG < SRR4302540.351411/94‑1 (MQ=0)
TAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGC > SRR4302540.4399146/1‑94 (MQ=0)
TAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGC < SRR4302540.2411228/94‑1 (MQ=0)
AGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCT < SRR4302540.2334358/94‑1 (MQ=0)
GCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTT > SRR4302540.1829336/1‑94 (MQ=0)
GCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTT > SRR4302540.3263084/1‑94 (MQ=0)
CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTT > SRR4302540.9281578/1‑94 (MQ=0)
CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTT > SRR4302540.5098472/1‑94 (MQ=0)
TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAATGCGCTATT > SRR4302540.4508324/1‑94 (MQ=0)
TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTT > SRR4302540.5909682/1‑94 (MQ=0)
CAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTT < SRR4302540.4475975/94‑1 (MQ=0)
GGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGTTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT < SRR4302540.627877/94‑1 (MQ=0)
AGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT > SRR4302540.8527390/1‑94 (MQ=0)
AGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT < SRR4302540.2989048/94‑1 (MQ=0)
AGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT < SRR4302540.1263417/94‑1 (MQ=0)
TTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGTTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAC < SRR4302540.5092552/94‑1 (MQ=2)
TTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAC > SRR4302540.4224554/1‑94 (MQ=2)
TTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAC < SRR4302540.2440233/94‑1 (MQ=2)
TGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACT > SRR4302540.3276363/1‑94 (MQ=5)
GGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTA > SRR4302540.2074708/1‑94 (MQ=7)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302540.469041/94‑1 (MQ=10)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302540.3960140/94‑1 (MQ=10)
TAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATC < SRR4302540.4844566/94‑1 (MQ=10)
TAGAGCAGTGGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATC < SRR4302540.4844565/94‑1 (MQ=9)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT < SRR4302540.9907878/94‑1 (MQ=10)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT < SRR4302540.8471243/94‑1 (MQ=10)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT < SRR4302540.6281408/94‑1 (MQ=10)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT < SRR4302540.5064225/94‑1 (MQ=10)
AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGC > SRR4302540.4774518/1‑94 (MQ=10)
GCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCG < SRR4302540.5826210/94‑1 (MQ=10)
GCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCG > SRR4302540.1654324/1‑94 (MQ=10)
CAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGA > SRR4302540.6559295/1‑94 (MQ=10)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGGCCTAAAGGCGCTTGTTTACTATCTGCGAT > SRR4302540.9110776/1‑94 (MQ=9)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAT > SRR4302540.8505938/1‑94 (MQ=10)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAT > SRR4302540.6731700/1‑94 (MQ=10)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAT > SRR4302540.8684590/1‑94 (MQ=10)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAT > SRR4302540.1337996/1‑94 (MQ=10)
AGTTGACTTTGAATCAATTGGACGCAGGTACGAATCCTGCACGTCCCACCAAGGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAT < SRR4302540.7689672/94‑1 (MQ=8)
GTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATA > SRR4302540.6781910/1‑94 (MQ=10)
GTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATA < SRR4302540.7107447/94‑1 (MQ=10)
GTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATA > SRR4302540.7480921/1‑94 (MQ=10)
GTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATA > SRR4302540.8259371/1‑94 (MQ=10)
GTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATA > SRR4302540.805532/1‑94 (MQ=10)
TTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAC > SRR4302540.1069136/1‑94 (MQ=10)
TGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACT < SRR4302540.996167/94‑1 (MQ=10)
GACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAACAAAGCGCCCTAAAGGAGCTTTTTTACTATCTGCGATCCTC > SRR4302540.1537263/1‑94 (MQ=8)
GACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTC > SRR4302540.3721805/1‑94 (MQ=10)
GACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTC < SRR4302540.7130498/94‑1 (MQ=10)
CTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAA < SRR4302540.7160214/94‑1 (MQ=10)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGGCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA < SRR4302540.9239858/94‑1 (MQ=9)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA > SRR4302540.9551523/1‑94 (MQ=10)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA > SRR4302540.1919671/1‑94 (MQ=10)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA > SRR4302540.3161570/1‑94 (MQ=10)
TTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAG > SRR4302540.7348692/1‑94 (MQ=10)
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT < SRR4302540.4417358/94‑1 (MQ=10)
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT < SRR4302540.9507721/94‑1 (MQ=10)
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT < SRR4302540.8189715/94‑1 (MQ=10)
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT > SRR4302540.3952659/1‑94 (MQ=10)
AATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATT > SRR4302540.1784782/1‑94 (MQ=10)
AATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATT < SRR4302540.6015860/94‑1 (MQ=10)
TCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCG > SRR4302540.2359876/1‑94 (MQ=10)
TCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCG > SRR4302540.2359877/1‑94 (MQ=10)
TCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCG > SRR4302540.6271576/1‑94 (MQ=10)
ATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAC > SRR4302540.6325894/1‑94 (MQ=10)
TTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACC < SRR4302540.8892297/94‑1 (MQ=10)
TTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACC < SRR4302540.9077746/94‑1 (MQ=10)
GGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTG > SRR4302540.5996461/1‑94 (MQ=10)
TCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCA < SRR4302540.1152598/94‑1 (MQ=10)
CGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAG < SRR4302540.9596302/94‑1 (MQ=10)
CGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAG > SRR4302540.3826356/1‑94 (MQ=10)
GCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCACC > SRR4302540.4478161/1‑94 (MQ=9)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG < SRR4302540.2495591/94‑1 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302540.7732169/1‑94 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG < SRR4302540.1666510/94‑1 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302540.9315993/1‑94 (MQ=10)
GGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGG > SRR4302540.7751899/1‑94 (MQ=10)
GGTTCGAATCCGGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGG < SRR4302540.3757601/94‑1 (MQ=9)
GTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGT > SRR4302540.5486495/1‑94 (MQ=10)
TCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTT < SRR4302540.4912245/94‑1 (MQ=10)
TCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTT < SRR4302540.7321746/94‑1 (MQ=10)
GAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGA > SRR4302540.5190097/1‑94 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG > SRR4302540.2067590/1‑94 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG > SRR4302540.8195785/1‑94 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG < SRR4302540.3513536/94‑1 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT > SRR4302540.4360486/1‑94 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT > SRR4302540.3627988/1‑94 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT < SRR4302540.464982/94‑1 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT < SRR4302540.6242440/94‑1 (MQ=10)
CCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTG > SRR4302540.7449686/1‑94 (MQ=10)
CCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTG < SRR4302540.2726228/94‑1 (MQ=10)
CTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGA > SRR4302540.4868046/1‑94 (MQ=10)
CTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGA < SRR4302540.4588876/94‑1 (MQ=10)
CCGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGA > SRR4302540.448274/1‑94 (MQ=9)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG < SRR4302540.7302631/94‑1 (MQ=10)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG > SRR4302540.1978595/1‑94 (MQ=10)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG < SRR4302540.7536635/94‑1 (MQ=10)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG < SRR4302540.3159607/94‑1 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC < SRR4302540.7028590/94‑1 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC > SRR4302540.6648594/1‑94 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC < SRR4302540.2714069/94‑1 (MQ=10)
CGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAACGATTCGAACCTCCACCAGGTTTGAGTTGAGCTCA > SRR4302540.5390855/1‑94 (MQ=8)
CGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGGGTTGAGCGCA < SRR4302540.4449136/94‑1 (MQ=9)
CGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCA > SRR4302540.5390856/1‑94 (MQ=10)
CGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCA > SRR4302540.7721348/1‑94 (MQ=10)
GGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAG > SRR4302540.5257478/1‑94 (MQ=10)
GCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC > SRR4302540.5031350/1‑94 (MQ=10)
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CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC > NC_000913/2519248‑2519434
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
