Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,519,341 |
A→G |
noncoding (69/76 nt) |
lysV → |
tRNA‑Lys |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,519,341 | 0 | A | G | 100.0%
| 381.2
/ NA
| 151 | noncoding (69/76 nt) | lysV | tRNA‑Lys |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (64/87); total (64/87) |
Only 100 of 157 total aligned reads displayed.
TCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCG > NC_000913/2519251‑2519430
|
cGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCccac < 1:949425/93‑1 (MQ=37)
catcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGACCACCaa > 2:2843205/1‑93 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCCGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGGCCACCAAt > 2:1602878/1‑93 (MQ=255)
atcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAAt < 1:2682649/93‑1 (MQ=255)
tcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATg > 2:2473414/1‑93 (MQ=255)
tcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATg < 2:60678/93‑1 (MQ=255)
cacccaccACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGt < 2:147763/93‑1 (MQ=255)
cccaccACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaa > 1:3673782/1‑93 (MQ=255)
cccaccACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaa > 2:3871740/1‑93 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa < 1:1357202/93‑1 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa > 1:1401079/1‑93 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa > 1:3107199/1‑93 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa > 2:5830972/1‑93 (MQ=255)
ccaccaCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaa > 1:2171076/1‑93 (MQ=255)
caccacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaaa > 1:3508115/1‑93 (MQ=255)
caccacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaaa < 1:1212057/93‑1 (MQ=255)
caccacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaaa < 1:4515507/93‑1 (MQ=255)
ccacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaaaaa < 1:3042407/93‑1 (MQ=255)
ccacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTaaaaaa > 2:4047724/1‑93 (MQ=255)
ccTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgc < 1:1558934/92‑1 (MQ=21)
acTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgc > 2:5185580/1‑93 (MQ=25)
acTGCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgc < 1:1331154/93‑1 (MQ=12)
cTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAgcg > 1:1573758/1‑93 (MQ=21)
tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAc < 1:5808896/93‑1 (MQ=17)
ggTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGTCCTAAAGGCGCTTTTTTACt < 1:5894658/93‑1 (MQ=16)
gTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTa > 2:2146689/1‑93 (MQ=18)
gTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTa < 1:677486/93‑1 (MQ=18)
tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:2799150/93‑1 (MQ=18)
tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:2799151/93‑1 (MQ=18)
agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATc < 1:3844023/93‑1 (MQ=18)
gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCt < 2:3725746/93‑1 (MQ=21)
gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCt < 2:3473855/93‑1 (MQ=21)
cgCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTg > 2:1525206/2‑93 (MQ=18)
agCAGTTGACTTTTAATCAATTGGTGGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTg < 1:1599917/93‑1 (MQ=16)
agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGTCGCTTTTTTACTATCTg < 1:4084279/93‑1 (MQ=255)
agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTg < 1:5516815/93‑1 (MQ=21)
cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCg < 2:3030641/93‑1 (MQ=18)
aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGTCCACCAATGTAGAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGa > 1:3084055/1‑93 (MQ=255)
aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGa < 2:1667827/93‑1 (MQ=18)
gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGAt < 2:765731/93‑1 (MQ=21)
tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAc > 2:1143768/1‑93 (MQ=18)
gACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAAGCGCGGTTTTACTATCTGCGATACt > 2:1112464/1‑93 (MQ=11)
cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCa < 2:358259/93‑1 (MQ=18)
ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaa > 1:2963889/1‑93 (MQ=18)
tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa < 2:692495/93‑1 (MQ=21)
ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAg < 2:3090177/93‑1 (MQ=21)
ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAg > 1:2398757/1‑93 (MQ=18)
tAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa < 2:2462079/93‑1 (MQ=18)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 1:5773022/93‑1 (MQ=18)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 2:5428064/93‑1 (MQ=18)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 1:635877/93‑1 (MQ=18)
aaTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt > 1:1934245/1‑93 (MQ=18)
aTCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAtt < 1:3879798/93‑1 (MQ=18)
aaTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 1:4857403/1‑93 (MQ=18)
aaTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 2:4107599/1‑93 (MQ=18)
aTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaa > 1:2949310/1‑93 (MQ=18)
aTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaa > 2:5108296/1‑93 (MQ=18)
aTTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaa > 2:5580177/1‑93 (MQ=18)
ttGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAc < 2:5942333/93‑1 (MQ=18)
ttGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAc < 1:1977332/93‑1 (MQ=21)
ttGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAc < 1:969772/93‑1 (MQ=18)
tGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAcc < 2:487299/93‑1 (MQ=21)
tGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAAcc < 1:864261/93‑1 (MQ=21)
ggTCGCAGGTTCGAATCCTGCACGGTCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCt < 1:6089228/93‑1 (MQ=16)
ggTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGGTACTCAAAGATTCGAACCt < 2:6191882/93‑1 (MQ=16)
ggTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCt < 1:181142/93‑1 (MQ=21)
ggTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCt < 2:78075/93‑1 (MQ=21)
cGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca > 1:3726890/1‑93 (MQ=18)
cGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca > 1:3508469/1‑93 (MQ=18)
gCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcag > 1:4767635/1‑93 (MQ=18)
cAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagc < 2:4147598/93‑1 (MQ=18)
aGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:1899716/1‑93 (MQ=18)
aGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca < 1:6142070/93‑1 (MQ=21)
aGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 2:2088918/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 1:3209895/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 1:2145053/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 2:3841835/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 2:2277057/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 2:5603565/1‑93 (MQ=18)
ggTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag > 1:5921871/1‑93 (MQ=18)
gTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAgg < 1:2615845/93‑1 (MQ=18)
ttCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGt < 2:2414358/93‑1 (MQ=18)
ttCGAATAATGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCGTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGt > 2:3268993/1‑93 (MQ=11)
tCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGtt < 2:3214917/93‑1 (MQ=21)
tCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGtt < 2:4582596/93‑1 (MQ=18)
cGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGttt < 1:3669448/93‑1 (MQ=18)
cGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGttt < 1:5339951/93‑1 (MQ=18)
aaTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttga < 1:4021909/93‑1 (MQ=21)
aTCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgag < 1:1229687/93‑1 (MQ=18)
aTCCTCCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgag < 2:1218007/93‑1 (MQ=16)
tCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagt > 2:3919283/1‑93 (MQ=18)
tCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagt < 2:1613939/93‑1 (MQ=21)
tCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagt > 1:6208835/1‑93 (MQ=18)
tGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 2:3752409/93‑1 (MQ=18)
tGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 1:4419356/93‑1 (MQ=21)
tGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 1:1988599/93‑1 (MQ=18)
gCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag < 1:739710/93‑1 (MQ=18)
gCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag < 1:3269202/93‑1 (MQ=18)
cACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgc < 1:5465388/93‑1 (MQ=18)
aCGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGGgcg > 1:5019120/1‑93 (MQ=16)
|
TCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCG > NC_000913/2519251‑2519430
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC > NC_000913/2519248‑2519434
|
CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGG < SRR4302533.2922568/94‑1 (MQ=21)
CGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACC < SRR4302533.955001/94‑1 (MQ=20)
CGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACC < SRR4302533.879710/94‑1 (MQ=20)
ATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATG < SRR4302533.2699086/94‑1 (MQ=28)
ACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAA > SRR4302533.3696358/1‑94 (MQ=30)
ACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAA > SRR4302533.3778561/1‑94 (MQ=30)
CCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA > SRR4302533.3126297/1‑94 (MQ=28)
CCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA > SRR4302533.1409526/1‑94 (MQ=28)
CCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAA > SRR4302533.2184429/1‑94 (MQ=28)
CCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAA > SRR4302533.3529747/1‑94 (MQ=25)
CCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAA < SRR4302533.1365358/94‑1 (MQ=25)
CACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAA < SRR4302533.1219349/94‑1 (MQ=23)
CACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAA < SRR4302533.4542849/94‑1 (MQ=23)
CCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAG < SRR4302533.2563159/94‑1 (MQ=15)
CCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAG < SRR4302533.3061029/94‑1 (MQ=15)
CCTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCG < SRR4302533.1568321/94‑1 (MQ=7)
ACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCG > SRR4302533.1583235/1‑94 (MQ=10)
ACTGCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCG < SRR4302533.1339139/94‑1 (MQ=0)
CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCT < SRR4302533.1264534/94‑1 (MQ=0)
CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCT > SRR4302533.4433877/1‑94 (MQ=0)
GGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAA > SRR4302533.4263917/1‑94 (MQ=0)
GTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAA > SRR4302533.1008001/1‑94 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG > SRR4302533.3149720/1‑94 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302533.4037215/94‑1 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG > SRR4302533.555408/1‑94 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302533.5918227/94‑1 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302533.3057631/94‑1 (MQ=0)
TCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAG < SRR4302533.6047250/94‑1 (MQ=0)
GTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGC < SRR4302533.2674349/94‑1 (MQ=0)
GTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGC < SRR4302533.3869820/94‑1 (MQ=0)
GTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGC > SRR4302533.4770466/1‑94 (MQ=0)
TTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCG < SRR4302533.2406853/94‑1 (MQ=0)
TTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCG < SRR4302533.2387856/94‑1 (MQ=0)
TTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCG > SRR4302533.2864936/1‑94 (MQ=0)
AGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCT < SRR4302533.2779399/94‑1 (MQ=0)
AGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCT < SRR4302533.4872165/94‑1 (MQ=0)
CAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTT < SRR4302533.1774236/94‑1 (MQ=0)
AGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT < SRR4302533.2310130/94‑1 (MQ=0)
AGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTT < SRR4302533.1866152/94‑1 (MQ=0)
GTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTA > SRR4302533.1390738/1‑94 (MQ=0)
TGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACT < SRR4302533.5151702/94‑1 (MQ=5)
TGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACT < SRR4302533.4870868/94‑1 (MQ=5)
TGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACT < SRR4302533.5843974/94‑1 (MQ=5)
GGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGTCCTAAAGGCGCTTTTTTACTA < SRR4302533.5930259/94‑1 (MQ=7)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302533.4328797/94‑1 (MQ=10)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302533.681491/94‑1 (MQ=10)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302533.2966732/94‑1 (MQ=10)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT < SRR4302533.2723446/94‑1 (MQ=10)
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAT > SRR4302533.5539628/1‑94 (MQ=10)
TAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATC < SRR4302533.2816366/94‑1 (MQ=10)
TAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATC < SRR4302533.2816367/94‑1 (MQ=10)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT < SRR4302533.3867501/94‑1 (MQ=10)
AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCT > SRR4302533.592417/1‑94 (MQ=10)
AGCAGTTGACTTTTAATCAATTGGTGGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGC < SRR4302533.1609601/94‑1 (MQ=9)
AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGTCGCTTTTTTACTATCTGC < SRR4302533.4109142/94‑1 (MQ=9)
AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGC < SRR4302533.5550124/94‑1 (MQ=10)
CAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGTCCACCAATGTAGAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGA > SRR4302533.3103016/1‑94 (MQ=9)
CAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGA < SRR4302533.3695133/94‑1 (MQ=10)
AGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTCAAGGCGCTTTTTTACTATCTGCGAT > SRR4302533.6057392/1‑94 (MQ=9)
TTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAC < SRR4302533.1796285/94‑1 (MQ=10)
GACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTC > SRR4302533.1965933/1‑94 (MQ=10)
CTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAA > SRR4302533.2982008/1‑94 (MQ=10)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA < SRR4302533.2652896/94‑1 (MQ=10)
TTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAA > SRR4302533.4530249/1‑94 (MQ=10)
TTTAATCAGTTGGTCGCATGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGCCGCTTTTTTACTATCTGCGATACTCAAAG < SRR4302533.2054381/94‑1 (MQ=8)
TTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAG > SRR4302533.2413568/1‑94 (MQ=10)
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGA < SRR4302533.69572/94‑1 (MQ=10)
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGA > SRR4302533.3913855/1‑94 (MQ=10)
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTCCGATACTCAAAGT > SRR4302533.3443291/1‑94 (MQ=9)
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT > SRR4302533.1946046/1‑94 (MQ=10)
TAATCAATTGGTCGCAGGTTCGAATCCTGCAAGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAT < SRR4302533.983431/94‑1 (MQ=9)
AATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATT > SRR4302533.237675/1‑94 (MQ=10)
AATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATT < SRR4302533.5807885/94‑1 (MQ=10)
AATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATT < SRR4302533.639618/94‑1 (MQ=10)
ATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTC < SRR4302533.3903472/94‑1 (MQ=10)
ATCAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTC < SRR4302533.6269707/94‑1 (MQ=10)
CAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGA > SRR4302533.4886842/1‑94 (MQ=10)
CAATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGA > SRR4302533.3022111/1‑94 (MQ=10)
AATTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAA > SRR4302533.2967348/1‑94 (MQ=10)
TTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACC < SRR4302533.975462/94‑1 (MQ=10)
TTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACC < SRR4302533.1989441/94‑1 (MQ=10)
TTGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACC > SRR4302533.3215873/1‑94 (MQ=10)
TGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCT < SRR4302533.869323/94‑1 (MQ=10)
TGGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCT < SRR4302533.2998130/94‑1 (MQ=10)
GGTCGCAGGTTCGAATCCTGCACGGTCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTG < SRR4302533.6126036/94‑1 (MQ=9)
GGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTG < SRR4302533.182271/94‑1 (MQ=10)
GGTCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTG < SRR4302533.6188314/94‑1 (MQ=10)
TCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCA > SRR4302533.3530101/1‑94 (MQ=10)
TCGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCA > SRR4302533.3749752/1‑94 (MQ=10)
CGCAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAG > SRR4302533.4796536/1‑94 (MQ=10)
CAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCA > SRR4302533.1911319/1‑94 (MQ=10)
CAGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCA < SRR4302533.3095662/94‑1 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302533.2158265/1‑94 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG < SRR4302533.6179060/94‑1 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302533.5957666/1‑94 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302533.1525713/1‑94 (MQ=10)
AGGTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > SRR4302533.3229665/1‑94 (MQ=10)
GTTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGT < SRR4302533.2631902/94‑1 (MQ=10)
TTCGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTT > SRR4302533.5721123/1‑94 (MQ=10)
CGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTG < SRR4302533.3692005/94‑1 (MQ=10)
CGAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTG < SRR4302533.5371972/94‑1 (MQ=10)
GAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGA > SRR4302533.546957/1‑94 (MQ=10)
GAATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGA > SRR4302533.1835127/1‑94 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG > SRR4302533.3673597/1‑94 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG < SRR4302533.4046397/94‑1 (MQ=10)
AATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAG > SRR4302533.30852/1‑94 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT > SRR4302533.2509063/1‑94 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT < SRR4302533.1237049/94‑1 (MQ=10)
ATCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGT > SRR4302533.6246075/1‑94 (MQ=10)
TCCTGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTT < SRR4302533.1569186/94‑1 (MQ=10)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG < SRR4302533.4446076/94‑1 (MQ=10)
TGCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAG < SRR4302533.2000766/94‑1 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC < SRR4302533.205007/94‑1 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC < SRR4302533.744063/94‑1 (MQ=10)
GCACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGC < SRR4302533.3289370/94‑1 (MQ=10)
CACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGGGCG > SRR4302533.5049520/1‑94 (MQ=9)
CACGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCG < SRR4302533.5498326/94‑1 (MQ=10)
CGGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCA < SRR4302533.3263756/94‑1 (MQ=10)
GGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAG < SRR4302533.1733007/94‑1 (MQ=10)
GGCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAG < SRR4302533.3511432/94‑1 (MQ=10)
GCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC < SRR4302533.6061681/94‑1 (MQ=10)
GCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC < SRR4302533.868487/94‑1 (MQ=10)
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CGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGC > NC_000913/2519248‑2519434
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
