Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,560,887	T→C	V115A (GTG→GCG)	b2447 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,560,887	0	T	C	100.0%	917.1 / NA	285	V115A (GTG→GCG)	b2447	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (137/148); total (137/148)

Only 100 of 300 total aligned reads displayed.

ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGTGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGC  >  NC_000913/2560797‑2560976

aTCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGgcgc                                                                                         <  2:1549556/93‑1 (MQ=255)

 tCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCt                                                                                        >  2:6491335/1‑93 (MQ=255)

 tCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCt                                                                                        >  2:6273919/1‑93 (MQ=255)

 tCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCt                                                                                        <  2:7623905/93‑1 (MQ=255)

 tCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCt                                                                                        >  1:964565/1‑93 (MQ=255)

 accAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCt                                                                                        <  1:5091773/92‑1 (MQ=255)

     gAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGcc                                                                                    >  2:1428034/1‑93 (MQ=255)

       atatGCGAAGCCCTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTg                                                                                  <  2:3243262/93‑1 (MQ=255)

        tatGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTgg                                                                                 >  1:6436435/1‑93 (MQ=255)

          tGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGt                                                                               <  2:6693439/93‑1 (MQ=255)

          tGCGAAGCACTGGAACATGAAACGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGt                                                                               >  1:1858768/1‑93 (MQ=255)

           gCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTg                                                                              <  2:89417/93‑1 (MQ=255)

             gAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAg                                                                            >  1:7097376/1‑93 (MQ=255)

             gAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAg                                                                            >  2:1913196/1‑93 (MQ=255)

             gAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAg                                                                            >  1:2003352/1‑93 (MQ=255)

                gCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCtt                                                                         <  1:6621124/93‑1 (MQ=255)

                 cACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTa                                                                        <  2:885353/93‑1 (MQ=255)

                 cACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTa                                                                        >  1:5058154/1‑93 (MQ=255)

                    tGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGTGTGAGCTTATCg                                                                     <  2:9217171/93‑1 (MQ=255)

                    tGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCg                                                                     >  1:817200/1‑93 (MQ=255)

                    tGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCg                                                                     >  1:9454371/1‑93 (MQ=255)

                    cggAACATGAAAGGCGTCATGAATGACAAAGCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCg                                                                     <  2:3455131/92‑1 (MQ=255)

                        aCATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGcaca                                                                 >  1:8610871/1‑93 (MQ=255)

                         cATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACaa                                                                <  1:2962556/93‑1 (MQ=255)

                            gAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGa                                                             <  1:4131327/93‑1 (MQ=255)

                            gAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGa                                                             <  1:6698779/93‑1 (MQ=255)

                             aaaGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGac                                                            >  2:7184690/1‑93 (MQ=255)

                              aaGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGaca                                                           <  2:3968423/93‑1 (MQ=255)

                              aaGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGaca                                                           >  2:3346394/1‑93 (MQ=255)

                               aGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGacac                                                          <  2:7410251/93‑1 (MQ=255)

                               aGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGacac                                                          <  1:3601529/93‑1 (MQ=255)

                                ggCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACAcc                                                         <  1:5254965/93‑1 (MQ=255)

                                ggCGTCATGAATAACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACAcc                                                         >  1:3846880/1‑93 (MQ=255)

                                  cGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCtt                                                       <  1:4459365/93‑1 (MQ=255)

                                  cGTCATCAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCtt                                                       <  2:806764/93‑1 (MQ=255)

                                   gTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTc                                                      <  2:7363749/93‑1 (MQ=255)

                                    tCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCa                                                     >  1:3441861/1‑93 (MQ=255)

                                    tCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCa                                                     >  1:798964/1‑93 (MQ=255)

                                    tCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCa                                                     <  2:8139752/93‑1 (MQ=255)

                                    tCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGGGAGCTTATCGCACAAAGACACCTTCa                                                     >  2:6378683/1‑93 (MQ=255)

                                    tCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGCACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCa                                                     >  1:1032547/1‑93 (MQ=255)

                                     cATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCAc                                                    <  2:9905314/93‑1 (MQ=255)

                                      atgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACg                                                   >  2:9307140/1‑93 (MQ=255)

                                       tgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACgg                                                  >  1:1398642/1‑93 (MQ=255)

                                       tgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACgg                                                  <  2:9608168/93‑1 (MQ=255)

                                       tgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACgg                                                  >  2:3057279/1‑93 (MQ=255)

                                       tgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACgg                                                  >  1:472146/1‑93 (MQ=255)

                                       tgaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACgg                                                  >  1:4333621/1‑93 (MQ=255)

                                        gaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACggg                                                 >  1:5931529/1‑93 (MQ=255)

                                        gaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACggg                                                 <  1:7380435/93‑1 (MQ=255)

                                        gaatgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACggg                                                 <  2:9519030/93‑1 (MQ=255)

                                           tgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGc                                              <  2:8437579/93‑1 (MQ=255)

                                           tgaCAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGc                                              >  1:5846710/1‑93 (MQ=255)

                                               aaacCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTACCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGaaa                                          <  2:4839418/93‑1 (MQ=255)

                                               aaaaCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGaaa                                          <  1:8498732/93‑1 (MQ=255)

                                                  aCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACgg                                       >  2:7812584/1‑93 (MQ=255)

                                                  aCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACgg                                       <  2:7507298/93‑1 (MQ=255)

                                                  aCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACgg                                       <  2:7240720/93‑1 (MQ=255)

                                                   cccGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGt                                      <  2:2320413/93‑1 (MQ=255)

                                                    ccGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGtt                                     >  1:1531943/1‑93 (MQ=255)

                                                    ccGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGtt                                     <  2:643865/93‑1 (MQ=255)

                                                     cGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGttt                                    <  2:2708139/93‑1 (MQ=255)

                                                     cGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGttt                                    <  1:912406/93‑1 (MQ=255)

                                                     cGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGttt                                    <  2:4051940/93‑1 (MQ=255)

                                                      gCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTc                                   >  2:1196981/1‑93 (MQ=255)

                                                       cTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCa                                  >  2:5057962/1‑93 (MQ=255)

                                                          ccACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATa                               >  2:4521099/1‑93 (MQ=255)

                                                            aCGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACt                             <  2:1699246/93‑1 (MQ=255)

                                                             cGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACtt                            >  1:2551059/1‑93 (MQ=255)

                                                             cGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACtt                            <  1:2469039/93‑1 (MQ=255)

                                                              gCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTc                           >  1:7484891/1‑93 (MQ=255)

                                                              gCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTc                           <  1:6184461/93‑1 (MQ=255)

                                                              gCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTc                           <  1:214536/93‑1 (MQ=255)

                                                               ccGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTcc                          <  2:6574782/93‑1 (MQ=255)

                                                               ccGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTcc                          <  2:3869544/93‑1 (MQ=255)

                                                                cGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCa                         <  2:3135368/93‑1 (MQ=255)

                                                                 gACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCaa                        >  2:5650506/1‑93 (MQ=255)

                                                                  aCAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCaaa                       <  1:7901590/93‑1 (MQ=255)

                                                                   cAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAAc                      <  1:3187594/93‑1 (MQ=255)

                                                                     aGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGa                    >  1:8328506/1‑93 (MQ=255)

                                                                     aGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGa                    >  1:5625740/1‑93 (MQ=255)

                                                                     aGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGa                    <  2:2553798/93‑1 (MQ=255)

                                                                      gTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGAt                   <  2:4211757/93‑1 (MQ=255)

                                                                       tGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATg                  <  1:268474/93‑1 (MQ=255)

                                                                       tGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATg                  >  1:4536718/1‑93 (MQ=255)

                                                                       tGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATg                  >  2:5343282/1‑93 (MQ=255)

                                                                        gggtagggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGt                 >  1:4909367/1‑93 (MQ=255)

                                                                         ggtagggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTa                <  1:9853085/93‑1 (MQ=255)

                                                                            agggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGa             >  2:5911862/1‑93 (MQ=255)

                                                                            agggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGa             <  2:1308534/93‑1 (MQ=255)

                                                                            agggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGa             >  1:9242393/1‑93 (MQ=255)

                                                                              ggtaCAGCAAGGCGCTTGCCTGGGTGAGCTTATTGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACa           >  1:6955831/1‑93 (MQ=255)

                                                                                 aCAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATgg        <  2:4597502/93‑1 (MQ=255)

                                                                                  cAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGa       >  1:3315642/1‑93 (MQ=255)

                                                                                   aGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGaa      <  2:2078501/93‑1 (MQ=255)

                                                                                   aGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGaa      <  1:7707896/93‑1 (MQ=255)

                                                                                   aGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGaa      <  1:9945324/93‑1 (MQ=255)

                                                                                    gCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAc     <  2:6843466/93‑1 (MQ=255)

                                                                                       aGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGc  >  2:6040697/1‑93 (MQ=255)

                                                                                       aGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGc  >  2:3645227/1‑93 (MQ=255)

ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGTGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGC  >  NC_000913/2560797‑2560976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGTGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  >  NC_000913/2560794‑2560980

GGCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGC                                                                                               <  SRR4302540.8019960/94‑1 (MQ=60)

 GCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCG                                                                                              >  SRR4302540.3874249/1‑94 (MQ=60)

 GCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCG                                                                                              <  SRR4302540.1470962/94‑1 (MQ=60)

 GCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCG                                                                                              <  SRR4302540.1470960/94‑1 (MQ=60)

  CATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGC                                                                                             >  SRR4302540.5692613/1‑94 (MQ=60)

  CATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGC                                                                                             >  SRR4302540.9329855/1‑94 (MQ=60)

  CATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGC                                                                                             >  SRR4302540.730758/1‑94 (MQ=60)

   ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCT                                                                                            >  SRR4302540.974525/1‑94 (MQ=60)

   ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCT                                                                                            <  SRR4302540.9634614/94‑1 (MQ=60)

   ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCT                                                                                            <  SRR4302540.3158298/94‑1 (MQ=60)

   ATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCT                                                                                            <  SRR4302540.2916484/94‑1 (MQ=60)

    TCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAATCCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTT                                                                                           <  SRR4302540.5146854/94‑1 (MQ=60)

    TCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTT                                                                                           <  SRR4302540.1232846/94‑1 (MQ=60)

    ACCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTT                                                                                           <  SRR4302540.5146855/94‑1 (MQ=60)

     CCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTG                                                                                          >  SRR4302540.2680715/1‑94 (MQ=60)

     CCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTG                                                                                          >  SRR4302540.2819908/1‑94 (MQ=60)

       AGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCC                                                                                        <  SRR4302540.368405/94‑1 (MQ=60)

       AGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCC                                                                                        >  SRR4302540.4506131/1‑94 (MQ=60)

        GAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCT                                                                                       <  SRR4302540.8187955/94‑1 (MQ=60)

        GAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCT                                                                                       <  SRR4302540.5092450/94‑1 (MQ=60)

        GAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCT                                                                                       >  SRR4302540.8876042/1‑94 (MQ=60)

        GAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCT                                                                                       >  SRR4302540.4575467/1‑94 (MQ=60)

          ATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCATGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGG                                                                                     <  SRR4302540.8216103/94‑1 (MQ=60)

          ATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGG                                                                                     >  SRR4302540.3901549/1‑94 (MQ=60)

          ATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGG                                                                                     >  SRR4302540.6508074/1‑94 (MQ=60)

          ATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGG                                                                                     <  SRR4302540.2080967/94‑1 (MQ=60)

          ATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGG                                                                                     <  SRR4302540.6724880/94‑1 (MQ=60)

           TATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGG                                                                                    >  SRR4302540.10113353/1‑94 (MQ=60)

           TATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGG                                                                                    >  SRR4302540.8523665/1‑94 (MQ=60)

           TATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTCGG                                                                                    >  SRR4302540.5098905/1‑94 (MQ=60)

           TATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGAGGGTAGGGTACAGCAAGGCGCTTGCCTGGG                                                                                    <  SRR4302540.9052094/94‑1 (MQ=60)

            ATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGT                                                                                   <  SRR4302540.4484708/94‑1 (MQ=60)

            ATGCGAAGCACTGGAACATGAAACGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGT                                                                                   >  SRR4302540.1879153/1‑94 (MQ=60)

             TGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTG                                                                                  >  SRR4302540.9493072/1‑94 (MQ=60)

              GCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGA                                                                                 <  SRR4302540.6654398/94‑1 (MQ=60)

              GCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGA                                                                                 <  SRR4302540.6704603/94‑1 (MQ=60)

               CGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAG                                                                                >  SRR4302540.2025038/1‑94 (MQ=60)

               CGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAG                                                                                >  SRR4302540.1424290/1‑94 (MQ=60)

               CGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAG                                                                                >  SRR4302540.7176353/1‑94 (MQ=60)

                GAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGC                                                                               >  SRR4302540.5112915/1‑94 (MQ=60)

                GAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGC                                                                               >  SRR4302540.35134/1‑94 (MQ=60)

                  AGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTT                                                                             >  SRR4302540.6480490/1‑94 (MQ=60)

                   GCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTA                                                                            <  SRR4302540.6694438/94‑1 (MQ=60)

                   GCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTA                                                                            >  SRR4302540.5112843/1‑94 (MQ=60)

                     ACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATC                                                                          >  SRR4302540.4587471/1‑94 (MQ=60)

                     ACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATC                                                                          >  SRR4302540.8737589/1‑94 (MQ=60)

                      CTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCG                                                                         >  SRR4302540.9566581/1‑94 (MQ=60)

                      CTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCG                                                                         >  SRR4302540.825884/1‑94 (MQ=60)

                      CTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCG                                                                         >  SRR4302540.7483441/1‑94 (MQ=60)

                       TGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGC                                                                        <  SRR4302540.4577947/94‑1 (MQ=60)

                        GGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCA                                                                       <  SRR4302540.3448548/94‑1 (MQ=60)

                         GAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGgaa                                                                      >  SRR4302540.1991649/1‑91 (MQ=60)

                          AACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACA                                                                     >  SRR4302540.8710925/1‑94 (MQ=60)

                            CATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAA                                                                   <  SRR4302540.2995231/94‑1 (MQ=60)

                             ATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAG                                                                  <  SRR4302540.1372442/94‑1 (MQ=60)

                               GAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGAC                                                                <  SRR4302540.6772724/94‑1 (MQ=60)

                               GAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGAC                                                                <  SRR4302540.4176007/94‑1 (MQ=60)

                                AAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACA                                                               <  SRR4302540.8303784/94‑1 (MQ=60)

                                AAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACA                                                               <  SRR4302540.3682062/94‑1 (MQ=60)

                                AAAGACGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACA                                                               <  SRR4302540.5156233/94‑1 (MQ=60)

                                 AAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACAC                                                              <  SRR4302540.6513479/94‑1 (MQ=60)

                                  AGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACC                                                             <  SRR4302540.3640881/94‑1 (MQ=60)

                                  AGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACC                                                             <  SRR4302540.8383437/94‑1 (MQ=60)

                                  AGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACC                                                             >  SRR4302540.6023489/1‑94 (MQ=60)

                                  AGGCGTCATGAATAACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACC                                                             >  SRR4302540.3888711/1‑94 (MQ=60)

                                   GGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCT                                                            <  SRR4302540.5312279/94‑1 (MQ=60)

                                    ggagaagaaaaaacaaacccctCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTT                                                           <  SRR4302540.1384048/72‑1 (MQ=60)

                                     CGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTC                                                          <  SRR4302540.4507708/94‑1 (MQ=60)

                                     CGTCATCAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTC                                                          <  SRR4302540.7946457/94‑1 (MQ=60)

                                      GTCATGAATGACAAAACCCGCTTCCACGCCGACTAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCA                                                         <  SRR4302540.8600529/94‑1 (MQ=60)

                                      GTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCA                                                         >  SRR4302540.3479284/1‑94 (MQ=60)

                                      GTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCA                                                         >  SRR4302540.807447/1‑94 (MQ=60)

                                      GTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGCACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCA                                                         >  SRR4302540.1043046/1‑94 (MQ=60)

                                       TCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCAC                                                        >  SRR4302540.7185802/1‑94 (MQ=60)

                                       TCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCAC                                                        <  SRR4302540.9674107/94‑1 (MQ=60)

                                        CATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACG                                                       <  SRR4302540.6442831/94‑1 (MQ=60)

                                         ATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGG                                                      >  SRR4302540.477205/1‑94 (MQ=60)

                                         ATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGG                                                      >  SRR4302540.4380795/1‑94 (MQ=60)

                                         ATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGG                                                      >  SRR4302540.1413661/1‑94 (MQ=60)

                                          TGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGG                                                     >  SRR4302540.3304358/1‑94 (MQ=60)

                                          TGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGG                                                     >  SRR4302540.5997072/1‑94 (MQ=60)

                                           GAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGT                                                    <  SRR4302540.987526/94‑1 (MQ=60)

                                           GAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGT                                                    <  SRR4302540.7462678/94‑1 (MQ=60)

                                             ATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGC                                                  >  SRR4302540.7488180/1‑94 (MQ=60)

                                             ATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGC                                                  >  SRR4302540.7888356/1‑94 (MQ=60)

                                             ATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGC                                                  >  SRR4302540.5911382/1‑94 (MQ=60)

                                                  AAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAAC                                             <  SRR4302540.8597484/94‑1 (MQ=60)

                                                  AAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAAC                                             >  SRR4302540.9969864/1‑94 (MQ=60)

                                                  AAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAAC                                             <  SRR4302540.4079515/94‑1 (MQ=60)

                                                    AACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGG                                           <  SRR4302540.7044281/94‑1 (MQ=60)

                                                      CCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTT                                         >  SRR4302540.1548906/1‑94 (MQ=60)

                                                        CGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTC                                       <  SRR4302540.922058/94‑1 (MQ=60)

                                                         GCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCA                                      >  SRR4302540.309953/1‑94 (MQ=60)

                                                         GCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCA                                      >  SRR4302540.1538676/1‑94 (MQ=60)

                                                         GCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCA                                      >  SRR4302540.696859/1‑94 (MQ=60)

                                                         GCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCA                                      <  SRR4302540.4864384/94‑1 (MQ=60)

                                                          CTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAA                                     >  SRR4302540.202793/1‑94 (MQ=60)

                                                           TTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAAT                                    >  SRR4302540.5463529/1‑94 (MQ=60)

                                                             CCACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATAC                                  >  SRR4302540.9535228/1‑94 (MQ=60)

                                                               ACGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTT                                >  SRR4302540.2578556/1‑94 (MQ=60)

                                                                CGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTC                               >  SRR4302540.7568439/1‑94 (MQ=60)

                                                                CGCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTC                               <  SRR4302540.2495615/94‑1 (MQ=60)

                                                                 GCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCC                              <  SRR4302540.6253341/94‑1 (MQ=60)

                                                                 GCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCC                              <  SRR4302540.2694426/94‑1 (MQ=60)

                                                                 GCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCC                              <  SRR4302540.216631/94‑1 (MQ=60)

                                                                 GCCGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCC                              <  SRR4302540.4278127/94‑1 (MQ=60)

                                                                   CGACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCAAA                            >  SRR4302540.2568082/1‑94 (MQ=60)

                                                                    GACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAA                           <  SRR4302540.1943524/94‑1 (MQ=60)

                                                                     GCAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAAC                          <  SRR4302540.6037186/94‑1 (MQ=60)

                                                                     ACAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAAC                          <  SRR4302540.7993744/94‑1 (MQ=60)

                                                                      CAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACG                         <  SRR4302540.3222226/94‑1 (MQ=60)

                                                                      CAAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACG                         >  SRR4302540.226700/1‑94 (MQ=60)

                                                                       AAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGA                        >  SRR4302540.5687661/1‑94 (MQ=60)

                                                                       AAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGA                        >  SRR4302540.5687662/1‑94 (MQ=60)

                                                                       AAGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGA                        >  SRR4302540.8425168/1‑94 (MQ=60)

                                                                        AGTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGAT                       <  SRR4302540.84801/94‑1 (MQ=60)

                                                                         GTGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATG                      >  SRR4302540.4585824/1‑94 (MQ=60)

                                                                          TGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGT                     <  SRR4302540.4614062/94‑1 (MQ=60)

                                                                          TGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGT                     <  SRR4302540.1800168/94‑1 (MQ=60)

                                                                          TGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGT                     >  SRR4302540.4962219/1‑94 (MQ=60)

                                                                          TGGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGT                     <  SRR4302540.271122/94‑1 (MQ=60)

                                                                           GGGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTA                    <  SRR4302540.9956234/94‑1 (MQ=60)

                                                                            GGTAGGGTACAGCAAGGGGTTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTAC                   <  SRR4302540.2540772/94‑1 (MQ=60)

                                                                            GGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTAC                   <  SRR4302540.1871174/94‑1 (MQ=60)

                                                                            GGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTAC                   <  SRR4302540.9968241/94‑1 (MQ=60)

                                                                            GGTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTAC                   <  SRR4302540.597806/94‑1 (MQ=60)

                                                                             GTAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACG                  <  SRR4302540.5799061/94‑1 (MQ=60)

                                                                              TAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGA                 >  SRR4302540.5950884/1‑94 (MQ=60)

                                                                              TAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGA                 >  SRR4302540.9353088/1‑94 (MQ=60)

                                                                              TAGGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGA                 <  SRR4302540.4361454/94‑1 (MQ=60)

                                                                                GGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATTGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACA               >  SRR4302540.7033220/1‑94 (MQ=60)

                                                                                GGGTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACA               >  SRR4302540.8050728/1‑94 (MQ=60)

                                                                                  GTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATG             <  SRR4302540.3265629/94‑1 (MQ=60)

                                                                                  GTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATG             <  SRR4302540.10036871/94‑1 (MQ=60)

                                                                                  GTACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATG             <  SRR4302540.9312782/94‑1 (MQ=60)

                                                                                   TACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGG            >  SRR4302540.7684153/1‑94 (MQ=60)

                                                                                    ACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGA           >  SRR4302540.3351996/1‑94 (MQ=60)

                                                                                    ACAGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGA           >  SRR4302540.4922290/1‑94 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         <  SRR4302540.7796321/94‑1 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         <  SRR4302540.7796322/94‑1 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         >  SRR4302540.6971983/1‑94 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         <  SRR4302540.3569264/94‑1 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         <  SRR4302540.10061461/94‑1 (MQ=60)

                                                                                      AGCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAAC         >  SRR4302540.3474292/1‑94 (MQ=60)

                                                                                       GCAAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACG        <  SRR4302540.717009/94‑1 (MQ=60)

                                                                                         AAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGC      >  SRR4302540.2246630/1‑94 (MQ=60)

                                                                                         AAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGC      >  SRR4302540.5173579/1‑94 (MQ=60)

                                                                                         AAGGCGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGC      >  SRR4302540.8020631/1‑94 (MQ=60)

                                                                                             CGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  >  SRR4302540.3923954/1‑94 (MQ=60)

                                                                                             CGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  <  SRR4302540.4960935/94‑1 (MQ=60)

                                                                                             CGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  <  SRR4302540.4960937/94‑1 (MQ=60)

                                                                                             CGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  >  SRR4302540.3552109/1‑94 (MQ=60)

                                                                                             CGCTTGCCTGCGTGAGCTTATCGCACAAAGACCCCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  <  SRR4302540.4517663/94‑1 (MQ=60)

TGCATCCAGAATATGCGAAGCACTGGAACATGAAAGGCGTCATGAATGACAAAACCCGCTTCCACGCCGACAAGTGGGTAGGGTACAGCAAGGTGCTTGCCTGGGTGAGCTTATCGCACAAAGACACCTTCACGGGTGCGAAACGGTTTCAATACTTCCAAACGATGTACGACATGGAACGGCAAAT  >  NC_000913/2560794‑2560980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`