Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,562,351 G→A G118S (GGC→AGC)  b2449 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,562,3510GA100.0% 1607.5 / NA 431G118S (GGC→AGC) b2449hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (214/217);  total (214/217)

Only 100 of 448 total aligned reads displayed.

ATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACGGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGG  >  NC_000913/2562261‑2562440
                                                                                          |                                                                                         
aTCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGc                                                                                         >  1:6695610/1‑93 (MQ=255)
aTCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGc                                                                                         >  1:6238126/1‑93 (MQ=255)
 tCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCt                                                                                        >  2:5922966/1‑93 (MQ=255)
 tCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCt                                                                                        <  1:5598086/93‑1 (MQ=255)
  ccTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCtt                                                                                       <  2:930195/93‑1 (MQ=255)
     ggTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGt                                                                                    <  1:8604117/93‑1 (MQ=255)
       tAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGttt                                                                                  <  2:6250559/93‑1 (MQ=255)
         aaaTACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTg                                                                                >  1:8894003/1‑93 (MQ=255)
         aaaTACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTg                                                                                >  1:2195505/1‑93 (MQ=255)
         aaaTACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTg                                                                                <  1:6159069/93‑1 (MQ=255)
          aaTACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTgg                                                                               >  1:6600255/1‑93 (MQ=255)
            tACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggta                                                                             <  1:8514195/93‑1 (MQ=255)
            tACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggta                                                                             <  2:2384327/93‑1 (MQ=255)
            tACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggta                                                                             <  2:1090140/93‑1 (MQ=255)
             aCCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACACCAGCTTTGTTTTggtag                                                                            <  1:4375406/93‑1 (MQ=255)
             aCCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggtag                                                                            <  2:6619507/93‑1 (MQ=255)
             aCCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGGAGCAGAAAACAACAGCTTTGTTTTggtag                                                                            >  1:3497281/1‑93 (MQ=255)
               cATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggtaggt                                                                          <  2:5228289/93‑1 (MQ=255)
               cATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTggtaggt                                                                          <  2:4957343/93‑1 (MQ=255)
                 tttCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGgtaggtag                                                                        >  2:9608967/1‑93 (MQ=255)
                 tttCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGgtaggtag                                                                        <  1:5306593/93‑1 (MQ=255)
                  ttCAGCAATGAACCTGAGTTCAAACTTAAAACGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGATTTGGTAGGTaga                                                                       <  2:8936662/93‑1 (MQ=255)
                  ttCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTaga                                                                       >  1:8778716/1‑93 (MQ=255)
                  ttCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTaga                                                                       >  1:9396662/1‑93 (MQ=255)
                   tCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTagag                                                                      >  2:6395290/1‑93 (MQ=255)
                   tCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTagag                                                                      <  2:5678805/93‑1 (MQ=255)
                    cAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGt                                                                     <  1:1231736/93‑1 (MQ=255)
                    cAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGt                                                                     <  2:2671702/93‑1 (MQ=255)
                    cAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGt                                                                     <  1:453771/93‑1 (MQ=255)
                     aGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTa                                                                    <  1:8453865/93‑1 (MQ=255)
                      gCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGATTTGTTTTGGTAGGTAGAGTAt                                                                   >  2:3572347/1‑93 (MQ=255)
                       cAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAtt                                                                  <  2:1969133/93‑1 (MQ=255)
                         aTGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTg                                                                >  2:4126645/1‑93 (MQ=255)
                             aaCTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGaaaa                                                            >  2:778855/1‑93 (MQ=255)
                              aCTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGaaaaa                                                           <  2:8757931/93‑1 (MQ=255)
                               cTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAAc                                                          <  1:7902344/93‑1 (MQ=255)
                                tGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACg                                                         <  1:466835/93‑1 (MQ=255)
                                  aGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTa                                                       <  1:2807810/93‑1 (MQ=255)
                                   gTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTaa                                                      <  1:2644366/93‑1 (MQ=255)
                                     tCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCTAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAatt                                                    <  1:4270524/93‑1 (MQ=255)
                                        aaCTTAAAGCGGCAGCGGTCAGAGAATGCGGCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAattgat                                                 <  1:8039939/93‑1 (MQ=255)
                                        aaCTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAattgat                                                 >  1:10019931/1‑93 (MQ=255)
                                         aCTTAAAGGGCCACCGATCAGATAAACCGCAAACGTAGCAGAACACAACACCTTGGTTTGGGTAGGCAGAGTATTTGAAAAACCTAattgatt                                                <  1:2068099/93‑1 (MQ=255)
                                         aCTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAattgatt                                                <  2:8048747/93‑1 (MQ=255)
                                           ttAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGc                                              >  2:7360734/1‑93 (MQ=255)
                                           ttAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGc                                              <  1:4862933/93‑1 (MQ=255)
                                           ttAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGc                                              >  1:7341207/1‑93 (MQ=255)
                                            tAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCg                                             >  2:3331266/1‑93 (MQ=255)
                                               aGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAAt                                          >  2:7901683/1‑93 (MQ=255)
                                                gCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATa                                         >  2:4481978/1‑93 (MQ=255)
                                                  ggCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGc                                       <  1:3657564/93‑1 (MQ=255)
                                                   gCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTACTTGATTGCGAATAGca                                      >  2:1479800/1‑93 (MQ=255)
                                                    cAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTTCGAATAGcaa                                     >  2:1142492/1‑93 (MQ=255)
                                                    cAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGcaa                                     <  1:5829338/93‑1 (MQ=255)
                                                    cAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGcaa                                     <  1:7648947/93‑1 (MQ=255)
                                                     aGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGcaac                                    >  1:5918697/1‑93 (MQ=255)
                                                      gCGGTCTGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGcaaca                                   >  2:3716114/1‑93 (MQ=255)
                                                            agagAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTaaa                             >  2:3135984/1‑93 (MQ=255)
                                                              agaATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAaaca                           >  2:1351125/1‑93 (MQ=255)
                                                              agaATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAaaca                           <  2:2886905/93‑1 (MQ=255)
                                                               gaATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAaacaa                          >  2:3794938/1‑93 (MQ=255)
                                                                aaTGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAaacaac                         >  2:5765332/1‑93 (MQ=255)
                                                                 aTGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTATAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAcc                        >  2:4360447/1‑93 (MQ=255)
                                                                 aTGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAaacaaca                        >  2:7538088/1‑92 (MQ=255)
                                                                 aTGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAcc                        >  1:4858143/1‑93 (MQ=255)
                                                                 aTGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAcc                        <  1:5008762/93‑1 (MQ=255)
                                                                  tGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCa                       >  2:4776827/1‑93 (MQ=255)
                                                                   gcgaCAACGTAGCAGAAAACAACAGCTTGGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCaa                      <  1:4765036/93‑1 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTTGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    >  2:2209411/1‑93 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGTGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    <  1:9510476/93‑1 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    >  2:6938806/1‑93 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    <  2:9180233/93‑1 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    >  2:7679284/1‑93 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    <  2:9813481/93‑1 (MQ=255)
                                                                     gcCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATa                    <  2:4684862/93‑1 (MQ=255)
                                                                      ccAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATac                   <  2:5605011/93‑1 (MQ=255)
                                                                      ccAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATac                   <  2:4911080/93‑1 (MQ=255)
                                                                      ccAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATac                   >  1:985135/1‑93 (MQ=255)
                                                                       cAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATaca                  <  1:7801647/93‑1 (MQ=255)
                                                                       cAACGTAGCAGAAAACAACAGCTTNGTTTNGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATaca                  <  2:5413856/93‑1 (MQ=255)
                                                                        aaCGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATacac                 <  1:3378044/93‑1 (MQ=255)
                                                                         aCGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAcc                >  2:502274/1‑93 (MQ=255)
                                                                         aCGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAcc                <  1:6956563/93‑1 (MQ=255)
                                                                         aCGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAcc                <  2:1692667/93‑1 (MQ=255)
                                                                         aCGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAcc                <  1:9278346/93‑1 (MQ=255)
                                                                          cGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAccc               <  1:157575/93‑1 (MQ=255)
                                                                          cGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAccc               >  1:3070468/1‑93 (MQ=255)
                                                                            tAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCgg             >  1:8298320/1‑93 (MQ=255)
                                                                            tAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCgg             >  1:3739437/1‑93 (MQ=255)
                                                                             aGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGc            >  1:2476748/1‑93 (MQ=255)
                                                                              gCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGcc           >  1:1034840/1‑93 (MQ=255)
                                                                              gCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGcc           >  2:7159997/1‑93 (MQ=255)
                                                                              gCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGcc           >  1:739934/1‑93 (MQ=255)
                                                                                 gAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCt        <  1:3920939/93‑1 (MQ=255)
                                                                                 gAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCt        >  2:5142850/1‑93 (MQ=255)
                                                                                 gAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCt        >  2:8479583/1‑93 (MQ=255)
                                                                                 gAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCt        >  1:6846469/1‑93 (MQ=255)
                                                                                  aaaaCAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTc       >  1:1766684/1‑93 (MQ=255)
                                                                                   aaaCAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCg      >  2:6724326/1‑93 (MQ=255)
                                                                                    aacaacAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGc     <  2:2111438/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACGGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGG  >  NC_000913/2562261‑2562440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 233 total aligned reads displayed.
AACATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACGGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTTT  >  NC_000913/2562258‑2562444
                                                                                             |                                                                                             
AACATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACA                                                                                               >  SRR4302540.5155709/1‑94 (MQ=60)
 ACATCCTTGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAG                                                                                              <  SRR4302540.3405418/94‑1 (MQ=60)
 ACATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAG                                                                                              >  SRR4302540.8726804/1‑94 (MQ=60)
 ACATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAG                                                                                              <  SRR4302540.965685/94‑1 (MQ=60)
  CATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGC                                                                                             >  SRR4302540.6769527/1‑94 (MQ=60)
   ATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGCGAATGCGCCAACGTAGCAGAAAACAACAGCT                                                                                            >  SRR4302540.1835169/1‑94 (MQ=60)
   ATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCT                                                                                            <  SRR4302540.1052198/94‑1 (MQ=60)
   ATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCT                                                                                            <  SRR4302540.635368/94‑1 (MQ=60)
    TCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTT                                                                                           <  SRR4302540.5659678/94‑1 (MQ=60)
      CTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTG                                                                                         >  SRR4302540.8076924/1‑94 (MQ=60)
      CTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTG                                                                                         >  SRR4302540.9606589/1‑94 (MQ=60)
       TGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGT                                                                                        <  SRR4302540.6744114/94‑1 (MQ=60)
       TGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGT                                                                                        >  SRR4302540.8452357/1‑94 (MQ=60)
        TGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTT                                                                                       <  SRR4302540.8704110/94‑1 (MQ=60)
        GGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTT                                                                                       <  SRR4302540.8704109/94‑1 (MQ=60)
         GTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTT                                                                                      >  SRR4302540.2186184/1‑94 (MQ=60)
          TAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTT                                                                                     >  SRR4302540.4403929/1‑94 (MQ=60)
          TAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTT                                                                                     >  SRR4302540.4348409/1‑94 (MQ=60)
           AAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTG                                                                                    >  SRR4302540.2219217/1‑94 (MQ=60)
           AAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTG                                                                                    >  SRR4302540.8996956/1‑94 (MQ=60)
            AAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGG                                                                                   <  SRR4302540.6227692/94‑1 (MQ=60)
            AAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGG                                                                                   >  SRR4302540.6673345/1‑94 (MQ=60)
             AATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAAAAACAGCTTTGTTTTGGT                                                                                  >  SRR4302540.5624058/1‑94 (MQ=60)
              ATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTA                                                                                 <  SRR4302540.2810205/94‑1 (MQ=60)
              AGACCATCTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTA                                                                                 <  SRR4302540.2810206/94‑1 (MQ=60)
               TGCCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                <  SRR4302540.7511918/94‑1 (MQ=60)
               TACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                <  SRR4302540.7437614/94‑1 (MQ=60)
               TACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                <  SRR4302540.8613147/94‑1 (MQ=60)
               TACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                <  SRR4302540.4716157/94‑1 (MQ=60)
               TACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                <  SRR4302540.4848626/94‑1 (MQ=60)
               TACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGGAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                >  SRR4302540.3535366/1‑94 (MQ=60)
               TACCATTTCAGCAAAGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAG                                                                                >  SRR4302540.6796115/1‑94 (MQ=60)
                ACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACACCAGCTTTGTTTTGGTAGG                                                                               <  SRR4302540.4422921/94‑1 (MQ=60)
                ACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGG                                                                               <  SRR4302540.4188019/94‑1 (MQ=60)
                ACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGG                                                                               <  SRR4302540.3891253/94‑1 (MQ=60)
                 CCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGT                                                                              <  SRR4302540.2687152/94‑1 (MQ=60)
                 CCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGT                                                                              <  SRR4302540.6053295/94‑1 (MQ=60)
                  CATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTA                                                                             >  SRR4302540.2208730/1‑94 (MQ=60)
                   ATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAG                                                                            >  SRR4302540.6354286/1‑94 (MQ=60)
                   ATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAG                                                                            >  SRR4302540.1602262/1‑94 (MQ=60)
                    TTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGA                                                                           <  SRR4302540.5364664/94‑1 (MQ=60)
                    TTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGA                                                                           >  SRR4302540.8880373/1‑94 (MQ=60)
                    TTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGA                                                                           >  SRR4302540.9508471/1‑94 (MQ=60)
                      TCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGT                                                                         <  SRR4302540.4551993/94‑1 (MQ=60)
                      TCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGT                                                                         <  SRR4302540.8987774/94‑1 (MQ=60)
                       CAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTA                                                                        >  SRR4302540.4594453/1‑94 (MQ=60)
                       CAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTA                                                                        <  SRR4302540.458613/94‑1 (MQ=60)
                       CAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTA                                                                        <  SRR4302540.1244313/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       <  SRR4302540.5213641/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       <  SRR4302540.6912214/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       <  SRR4302540.7463721/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       >  SRR4302540.5172693/1‑94 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       <  SRR4302540.8552023/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       >  SRR4302540.8110390/1‑94 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       <  SRR4302540.2324121/94‑1 (MQ=60)
                        AGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTAT                                                                       >  SRR4302540.2238165/1‑94 (MQ=60)
                         GCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATT                                                                      <  SRR4302540.5131182/94‑1 (MQ=60)
                         GCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATT                                                                      <  SRR4302540.1028985/94‑1 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGTATGCGCCAACGTAGCAGAAAACCACAGCTTTGTTTTGGTAGGTAGAATATTTG                                                                    >  SRR4302540.7917933/1‑94 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTG                                                                    >  SRR4302540.8605291/1‑94 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTG                                                                    >  SRR4302540.5837732/1‑94 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTG                                                                    >  SRR4302540.7917932/1‑94 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTG                                                                    >  SRR4302540.9554655/1‑94 (MQ=60)
                           AATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGGATTTG                                                                    >  SRR4302540.8605289/1‑94 (MQ=60)
                            ATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGA                                                                   >  SRR4302540.7337040/1‑94 (MQ=60)
                            ATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGA                                                                   <  SRR4302540.9369040/94‑1 (MQ=60)
                            ATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGA                                                                   >  SRR4302540.4958406/1‑94 (MQ=60)
                             TGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAA                                                                  <  SRR4302540.1106666/94‑1 (MQ=60)
                             TGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAA                                                                  >  SRR4302540.6623222/1‑94 (MQ=60)
                             TGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAA                                                                  <  SRR4302540.3580869/94‑1 (MQ=60)
                             TGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAA                                                                  <  SRR4302540.8326376/94‑1 (MQ=60)
                                  CTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACG                                                             <  SRR4302540.539983/94‑1 (MQ=60)
                                   TGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGT                                                            >  SRR4302540.9392979/1‑94 (MQ=60)
                                   TGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGT                                                            <  SRR4302540.471830/94‑1 (MQ=60)
                                   TGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGT                                                            <  SRR4302540.7435143/94‑1 (MQ=60)
                                     AGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAA                                                          <  SRR4302540.2838134/94‑1 (MQ=60)
                                      GTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAAT                                                         >  SRR4302540.3603537/1‑94 (MQ=60)
                                      GTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAAT                                                         <  SRR4302540.391240/94‑1 (MQ=60)
                                        TCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCTAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTG                                                       <  SRR4302540.4316973/94‑1 (MQ=60)
                                        TCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTG                                                       >  SRR4302540.67610/1‑94 (MQ=60)
                                         CAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGA                                                      <  SRR4302540.8682552/94‑1 (MQ=60)
                                         CAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGA                                                      <  SRR4302540.9584798/94‑1 (MQ=60)
                                         CAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGA                                                      >  SRR4302540.5005122/1‑94 (MQ=60)
                                          AAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGAT                                                     >  SRR4302540.8967912/1‑94 (MQ=60)
                                          AAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGAT                                                     >  SRR4302540.10136547/1‑94 (MQ=60)
                                           AACTTAAAGCGGCAGCGGTCAGAGAATGCGGCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATT                                                    <  SRR4302540.8133367/94‑1 (MQ=60)
                                           AACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTactg                                                    >  SRR4302540.8484096/1‑90 (MQ=60)
                                            ACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTG                                                   <  SRR4302540.2090341/94‑1 (MQ=60)
                                            ACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTG                                                   <  SRR4302540.161335/94‑1 (MQ=60)
                                             CTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGC                                                  >  SRR4302540.7423125/1‑94 (MQ=60)
                                              TTAAAGCGGCATCGGTCAGATAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCG                                                 <  SRR4302540.4915082/94‑1 (MQ=60)
                                              TTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCG                                                 <  SRR4302540.4915083/94‑1 (MQ=60)
                                              TTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCG                                                 <  SRR4302540.1853704/94‑1 (MQ=60)
                                              TTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCG                                                 <  SRR4302540.6191647/94‑1 (MQ=60)
                                               TAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGA                                                >  SRR4302540.281258/1‑94 (MQ=60)
                                               TAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGA                                                >  SRR4302540.9254511/1‑94 (MQ=60)
                                               TAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGA                                                >  SRR4302540.8064392/1‑94 (MQ=60)
                                                AAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAATCAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAA                                               <  SRR4302540.101629/94‑1 (MQ=60)
                                                AAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAGCAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAA                                               <  SRR4302540.3139926/94‑1 (MQ=60)
                                                AAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAA                                               <  SRR4302540.55536/94‑1 (MQ=60)
                                                AAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAA                                               <  SRR4302540.646732/94‑1 (MQ=60)
                                                AAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAA                                               >  SRR4302540.8872809/1‑94 (MQ=60)
                                                 AAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAAT                                              >  SRR4302540.3671256/1‑94 (MQ=60)
                                                 AAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAAT                                              >  SRR4302540.2203981/1‑94 (MQ=60)
                                                 AAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGAATTTGAAAAACGTAATTGATTGCGAAT                                              >  SRR4302540.6904791/1‑94 (MQ=60)
                                                 AAGCGGCAGCGGCCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAAT                                              <  SRR4302540.1556016/94‑1 (MQ=60)
                                                   GCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAG                                            <  SRR4302540.3239764/94‑1 (MQ=60)
                                                    GGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGC                                           <  SRR4302540.1466612/94‑1 (MQ=60)
                                                    CGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGC                                           <  SRR4302540.9489365/94‑1 (MQ=60)
                                                     GGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCA                                          <  SRR4302540.3697615/94‑1 (MQ=60)
                                                     GGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCA                                          <  SRR4302540.3697614/94‑1 (MQ=60)
                                                      GCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAA                                         <  SRR4302540.3108505/94‑1 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAC                                        >  SRR4302540.5984079/1‑94 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAC                                        <  SRR4302540.7735051/94‑1 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAC                                        >  SRR4302540.5984078/1‑94 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAC                                        <  SRR4302540.5893785/94‑1 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAC                                        <  SRR4302540.7735050/94‑1 (MQ=60)
                                                       CAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAAA                                        >  SRR4302540.2938059/1‑94 (MQ=60)
                                                        AGCGGTCGGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACA                                       >  SRR4302540.4871150/1‑94 (MQ=60)
                                                        AGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACA                                       >  SRR4302540.9563772/1‑94 (MQ=60)
                                                        AGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACA                                       >  SRR4302540.4762236/1‑94 (MQ=60)
                                                        AGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACA                                       >  SRR4302540.4871153/1‑94 (MQ=60)
                                                          CGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAAC                                     >  SRR4302540.3731966/1‑94 (MQ=60)
                                                           GGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACT                                    <  SRR4302540.627971/94‑1 (MQ=60)
                                                           GGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACT                                    >  SRR4302540.256632/1‑94 (MQ=60)
                                                           GGTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTGTTGGTAGGTAGAGTATTTGAAAAACGTAATGGATTGCGAATAGCAACAACA                                    >  SRR4302540.7788319/1‑94 (MQ=60)
                                                            GTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTA                                   >  SRR4302540.7029526/1‑94 (MQ=60)
                                                            GTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTA                                   <  SRR4302540.3487115/94‑1 (MQ=60)
                                                            GTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTA                                   >  SRR4302540.8402078/1‑94 (MQ=60)
                                                            GTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTA                                   >  SRR4302540.4473089/1‑94 (MQ=60)
                                                            GTCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTA                                   <  SRR4302540.3487116/94‑1 (MQ=60)
                                                             TCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAA                                  <  SRR4302540.1593195/94‑1 (MQ=60)
                                                             TCAGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAA                                  <  SRR4302540.6231731/94‑1 (MQ=60)
                                                               AGAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAAC                                >  SRR4302540.7048992/1‑94 (MQ=60)
                                                                GAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACA                               <  SRR4302540.4355204/94‑1 (MQ=60)
                                                                GAGAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACA                               <  SRR4302540.4943292/94‑1 (MQ=60)
                                                                  GAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAC                             <  SRR4302540.2654815/94‑1 (MQ=60)
                                                                  GAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAC                             <  SRR4302540.937400/94‑1 (MQ=60)
                                                                  GAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAC                             >  SRR4302540.5950636/1‑94 (MQ=60)
                                                                  GAATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAC                             >  SRR4302540.9856027/1‑94 (MQ=60)
                                                                   AATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTACACAACC                            >  SRR4302540.4910227/1‑94 (MQ=60)
                                                                   AATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACC                            <  SRR4302540.4804038/94‑1 (MQ=60)
                                                                   AATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACC                            >  SRR4302540.4910225/1‑94 (MQ=60)
                                                                   AATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACC                            >  SRR4302540.4910226/1‑94 (MQ=60)
                                                                    ATGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCA                           >  SRR4302540.2552053/1‑94 (MQ=60)
                                                                     TGCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAA                          <  SRR4302540.5720115/94‑1 (MQ=60)
                                                                      GCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAAT                         <  SRR4302540.9878496/94‑1 (MQ=60)
                                                                      GCGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAAT                         <  SRR4302540.2337096/94‑1 (MQ=60)
                                                                       CGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATA                        <  SRR4302540.7912084/94‑1 (MQ=60)
                                                                       CGCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATA                        >  SRR4302540.3049021/1‑94 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACTACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       <  SRR4302540.8730826/94‑1 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       >  SRR4302540.995206/1‑94 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       <  SRR4302540.4127845/94‑1 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       <  SRR4302540.5757165/94‑1 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       >  SRR4302540.6293001/1‑94 (MQ=60)
                                                                        GCCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATAC                       <  SRR4302540.7360396/94‑1 (MQ=60)
                                                                         CCAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACA                      >  SRR4302540.379778/1‑94 (MQ=60)
                                                                          CAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAC                     <  SRR4302540.7892829/94‑1 (MQ=60)
                                                                          CAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAC                     >  SRR4302540.1267767/1‑94 (MQ=60)
                                                                          CAACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACAC                     <  SRR4302540.8676694/94‑1 (MQ=60)
                                                                           AACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACC                    >  SRR4302540.8361332/1‑94 (MQ=60)
                                                                           AACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACC                    >  SRR4302540.8951471/1‑94 (MQ=60)
                                                                           AACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACC                    <  SRR4302540.3414938/94‑1 (MQ=60)
                                                                            atggAGCAGAAAACAACAGCTTTGTTTTGTTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCC                   <  SRR4302540.1429169/90‑1 (MQ=60)
                                                                            ACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCC                   >  SRR4302540.3104161/1‑94 (MQ=60)
                                                                            ACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCC                   <  SRR4302540.7033957/94‑1 (MQ=60)
                                                                            ACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCC                   <  SRR4302540.9389258/94‑1 (MQ=60)
                                                                            ACGTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCC                   <  SRR4302540.465458/94‑1 (MQ=60)
                                                                              GTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGG                 >  SRR4302540.3780234/1‑94 (MQ=60)
                                                                              GTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGG                 >  SRR4302540.7984937/1‑94 (MQ=60)
                                                                              GTAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGG                 >  SRR4302540.8394673/1‑94 (MQ=60)
                                                                               TAGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGC                >  SRR4302540.2503414/1‑94 (MQ=60)
                                                                                AGCAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCC               >  SRR4302540.1045365/1‑94 (MQ=60)
                                                                                  CAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCC             >  SRR4302540.7501889/1‑94 (MQ=60)
                                                                                  CAGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCC             >  SRR4302540.6995473/1‑94 (MQ=60)
                                                                                   AGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAAGCAATACACACGGCTCCT            >  SRR4302540.7750539/1‑94 (MQ=60)
                                                                                   AGAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCT            >  SRR4302540.6922314/1‑94 (MQ=60)
                                                                                    GAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           <  SRR4302540.7558360/94‑1 (MQ=60)
                                                                                    GAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           >  SRR4302540.1785847/1‑94 (MQ=60)
                                                                                    GAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           >  SRR4302540.9763245/1‑94 (MQ=60)
                                                                                    GAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           <  SRR4302540.3925342/94‑1 (MQ=60)
                                                                                    GAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           <  SRR4302540.3963374/94‑1 (MQ=60)
                                                                                    AAAAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTC           <  SRR4302540.8364633/94‑1 (MQ=60)
                                                                                      AAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGC         <  SRR4302540.503006/94‑1 (MQ=60)
                                                                                      AAACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGC         >  SRR4302540.3508028/1‑94 (MQ=60)
                                                                                       AACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCC        >  SRR4302540.4567583/1‑94 (MQ=60)
                                                                                       AACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCC        <  SRR4302540.7003423/94‑1 (MQ=60)
                                                                                        ACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCG       >  SRR4302540.858807/1‑94 (MQ=60)
                                                                                        ACAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCG       <  SRR4302540.609802/94‑1 (MQ=60)
                                                                                         CAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGG      <  SRR4302540.1040085/94‑1 (MQ=60)
                                                                                         CAACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGG      <  SRR4302540.4762464/94‑1 (MQ=60)
                                                                                          AACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGG     >  SRR4302540.1302811/1‑94 (MQ=60)
                                                                                           ACAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGT    >  SRR4302540.9886012/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.608623/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.697330/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.2764251/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.8788623/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.8788624/1‑94 (MQ=60)
                                                                                            CAGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTT   >  SRR4302540.9186269/1‑94 (MQ=60)
                                                                                             AGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTTT  <  SRR4302540.628305/94‑1 (MQ=60)
                                                                                             |                                                                                             
AACATCCTGGTAAAATACCATTTCAGCAATGAAACTGAGTTCAAACTTAAAGCGGCAGCGGTCAGAGAATGCGCCAACGTAGCAGAAAACAACGGCTTTGTTTTGGTAGGTAGAGTATTTGAAAAACGTAATTGATTGCGAATAGCAACAACTAAACAACCAATACACCCGGCCCCTCGCCGGGTTT  >  NC_000913/2562258‑2562444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑