Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,603,370	T→C	Y180Y (TAT→TAC)	hyfD →	hydrogenase 4 membrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,603,370	0	T	C	95.7%	730.7 / 11.6	258	Y180Y (TAT→TAC)	hyfD	hydrogenase 4 membrane subunit
Reads supporting (aligned to +/- strand): ref base T (4/7); new base C (93/154); total (97/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-01

Only 100 of 329 total aligned reads displayed.

GGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGG  >  NC_000913/2603280‑2603462

ggCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCt                                                                                            <  2:5241879/93‑1 (MQ=255)

ggCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCt                                                                                            >  1:3135242/1‑93 (MQ=255)

   gTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTgc                                                                                         >  1:3461152/1‑93 (MQ=255)

     tGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTTCCTTtccg                                                                                       >  1:634097/1‑93 (MQ=255)

      gATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTgccgc                                                                                      <  1:6536604/93‑1 (MQ=255)

        tCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTgccgccg                                                                                    >  1:3783854/1‑93 (MQ=255)

           gTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTtccgccgccc                                                                                 >  1:2394149/1‑92 (MQ=255)

           gTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTtcccccgccc                                                                                 >  2:9773845/1‑92 (MQ=255)

           gTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTGGGGTTGTTCCTTgacgcccccc                                                                                 >  1:4518210/1‑92 (MQ=255)

             tattaCCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTGGGGGTGTACCTTGCCGCCGCCAcc                                                                               >  1:612638/1‑92 (MQ=255)

              attaCCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTTGGGTTGTACCTTTCCcccgccccgc                                                                              >  1:5845494/1‑93 (MQ=255)

              attaCCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGc                                                                              >  1:1361818/1‑93 (MQ=255)

              attaCCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTTGGGTTGTTCCTTGCCGCCGCCCCGc                                                                              >  2:9002287/1‑93 (MQ=255)

                  ccAGAGCGATAAGGCGCATCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGtt                                                                          <  2:6553195/93‑1 (MQ=255)

                  ccAGAGCAATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGtt                                                                          <  2:4489686/93‑1 (MQ=255)

                    agagCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGGCGCCGCCACGCTGtttt                                                                        >  2:6025238/1‑93 (MQ=255)

                    agagCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGtttt                                                                        <  2:3994544/93‑1 (MQ=255)

                    agagCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCCCCCCGCTGtttt                                                                        >  2:2689657/1‑93 (MQ=255)

                      agCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTg                                                                      >  1:5163625/1‑93 (MQ=255)

                       gCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCCCGCTGTTTTTGc                                                                     >  2:2539636/1‑93 (MQ=255)

                        cGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCa                                                                    <  2:2463268/93‑1 (MQ=255)

                        cGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCa                                                                    <  1:5025587/93‑1 (MQ=255)

                        cGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCCGTTTTTGCa                                                                    >  2:8209493/1‑93 (MQ=255)

                        cGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTTGGGGTGTATCTTGTCGCCGCCACGCTGttttttcg                                                                    >  2:3712304/1‑90 (MQ=255)

                         gATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAg                                                                   <  2:7545361/93‑1 (MQ=255)

                         gATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCCCCCCGCCGTTTTTGCaa                                                                   >  2:3855667/1‑92 (MQ=255)

                          aTAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGa                                                                  >  2:8710777/1‑93 (MQ=255)

                              aGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCCTGCCGCCGCCACGCCGTTTTTGCAGACCgg                                                              >  2:5794222/1‑93 (MQ=255)

                              aGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGGCCgg                                                              >  2:7842408/1‑93 (MQ=255)

                               gcgcAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGa                                                             <  1:959874/93‑1 (MQ=255)

                                cgcAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGaa                                                            <  2:9514729/93‑1 (MQ=255)

                                 gcAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAAc                                                           <  1:623091/93‑1 (MQ=255)

                                    gCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGtt                                                        <  2:6833961/93‑1 (MQ=255)

                                      gTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTATCTTGTCGCCGCCACGCTGTTTTTGCCGACCGGGACGTTTg                                                      >  2:6967302/1‑93 (MQ=255)

                                       ttCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTgc                                                     <  1:1203673/93‑1 (MQ=255)

                                       ttCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTgc                                                     >  1:9949475/1‑93 (MQ=255)

                                       ttCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGGACCTTGCCGCCCCCACGCTGTTTTTGCAGACCGGAACGTTTgg                                                     >  2:7939547/1‑92 (MQ=255)

                                          aGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGATGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCt                                                  <  2:1698901/93‑1 (MQ=255)

                                           gCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCtt                                                 >  1:8125694/1‑93 (MQ=255)

                                           gCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCtt                                                 <  1:3960957/93‑1 (MQ=255)

                                            cACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCCCGCTGTTTTTGCCGACCGGAACGTTTGCGCTTa                                                >  2:6664721/1‑93 (MQ=255)

                                             aCTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCCCGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAg                                               >  1:4212159/1‑93 (MQ=255)

                                             aCTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAg                                               <  2:8523182/93‑1 (MQ=255)

                                              cTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAgc                                              <  2:1107683/93‑1 (MQ=255)

                                              cTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAgc                                              >  2:294909/1‑93 (MQ=255)

                                              cTAAAAGCGTTACTTATCACTCATATCGGCTCCCTGGGGTTGTACCTTGGCGCCGCCACGCTGTTTTTGCAAACCCGAACGTTTGCGCTTAgc                                              >  1:8711281/1‑93 (MQ=255)

                                               tAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCCCCGCTGTGTTTGTAGACCGGGACTTTTGCGCTTAgcg                                             >  1:8989785/1‑93 (MQ=255)

                                               tAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTTCGCGTAgcg                                             >  1:2365435/1‑93 (MQ=255)

                                               tAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGGACCTTTGCGCCGCCACGCTGTTTTTGCAGAACGGAACGGTTGCGGTTAgcg                                             >  2:1564460/1‑93 (MQ=255)

                                                aaaaGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAgcgc                                            >  2:9906159/1‑93 (MQ=255)

                                                 aaaGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCCGTTTTTGCAGACCGGAACGGTTGCGCTTAGcgcg                                           >  2:5066527/1‑93 (MQ=255)

                                                  aaGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGa                                          <  2:6414662/93‑1 (MQ=255)

                                                  aaGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGa                                          <  1:1522323/93‑1 (MQ=255)

                                                   aGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGAt                                         <  1:5416221/93‑1 (MQ=255)

                                                    gCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTTCCTTTCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGATTAGCGCGATg                                        >  2:6305663/1‑93 (MQ=255)

                                                    gCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATg                                        <  1:7952508/93‑1 (MQ=255)

                                                     cGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTGGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTGGCGCTTAGCGCGATGa                                       <  2:4883120/93‑1 (MQ=255)

                                                      gTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAg                                      <  2:2320694/93‑1 (MQ=255)

                                                       ttACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGtt                                                        >  1:8855998/1‑74 (MQ=255)

                                                       ttACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTTCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGGTGAGc                                     >  1:304758/1‑93 (MQ=255)

                                                       ttACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTTCAGACCGGAACGTTTGCGCTTAGCGCGATGAGc                                     >  1:1878224/1‑93 (MQ=255)

                                                        tACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCg                                    >  1:8641443/1‑93 (MQ=255)

                                                        tACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCg                                    <  1:9073159/93‑1 (MQ=255)

                                                           ttATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGCACGTTTGCGCTTAGCGTGATGAGCgtgt                                 >  2:8238806/1‑93 (MQ=255)

                                                           ttATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGGTGAGCGAGt                                 >  2:4809611/1‑93 (MQ=255)

                                                            tATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCTTAGCGCGATGAGCGAggt                                >  2:2133456/1‑91 (MQ=255)

                                                            tATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTTCAGACCGGGACGCTTGCGCTTTGCCCGATGAGCGAGtt                                >  2:1825738/1‑93 (MQ=255)

                                                             aTCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTa                               >  2:2064172/1‑93 (MQ=255)

                                                             aTCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTa                               <  2:3589445/93‑1 (MQ=255)

                                                              tCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTac                              >  1:1430769/1‑93 (MQ=255)

                                                                ccTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTacac                            <  1:7681700/92‑1 (MQ=255)

                                                                aCTCATATCGGCTCGTTGGGGTTGTCCCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTacac                            <  2:4621844/93‑1 (MQ=255)

                                                                 cTCATATCGGCTCGTTGGGGCTGTACCTTGCCGGCGCCACGGTGGTTTTGCAGACCGGGACGCTTGCGGCTAGCGCGGTGAGCGGGGTACACg                           >  2:1644522/1‑93 (MQ=255)

                                                                   cATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACAGc                         >  2:4988252/1‑93 (MQ=255)

                                                                    atatCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCg                        <  1:2058609/93‑1 (MQ=255)

                                                                     tatCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGa                       <  1:7477599/93‑1 (MQ=255)

                                                                     tatCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGa                       <  1:2461852/93‑1 (MQ=255)

                                                                     catCGGCACGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGGTACACGGCGa                       >  2:6166921/2‑93 (MQ=255)

                                                                       tCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACg                     <  1:5861510/93‑1 (MQ=255)

                                                                         ggCTCGTTGGGGTTGTGCCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCa                   <  1:8417561/93‑1 (MQ=255)

                                                                         ggCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCa                   <  2:1407583/93‑1 (MQ=255)

                                                                         ggCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCa                   >  1:7126022/1‑93 (MQ=255)

                                                                         ggCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCa                   <  1:4687721/93‑1 (MQ=255)

                                                                          gCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCAc                  >  2:7276432/1‑93 (MQ=255)

                                                                            tCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGt                <  2:550585/93‑1 (MQ=255)

                                                                            tCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGt                <  1:2788627/93‑1 (MQ=255)

                                                                              gTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTa              <  1:5929081/93‑1 (MQ=255)

                                                                               ttGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTAt             >  1:9507726/1‑93 (MQ=255)

                                                                                tGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATc            <  1:1999933/93‑1 (MQ=255)

                                                                                 ggggTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCt           <  1:9366849/93‑1 (MQ=255)

                                                                                   ggTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTgg         <  1:4585407/93‑1 (MQ=255)

                                                                                     ttGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGCCGCACGTTATCTGGtt       >  1:2269646/1‑93 (MQ=255)

                                                                                      tGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGttt      <  2:8083307/93‑1 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTa     <  2:7003694/93‑1 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTa     >  1:7296287/1‑93 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTa     <  1:6810924/93‑1 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTa     <  2:9278229/93‑1 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTa     <  1:9199373/93‑1 (MQ=255)

                                                                                       gTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGCTACACGGCGACGCACGTTATCTGGTTTa     >  2:4244608/1‑93 (MQ=255)

                                                                                          tCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATgg  <  1:3601370/93‑1 (MQ=255)

GGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGG  >  NC_000913/2603280‑2603462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGC  >  NC_000913/2603278‑2603463

TGGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACC                                                                                              <  SRR4302540.4996913/94‑1 (MQ=60)

TGGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACC                                                                                              >  SRR4302540.645906/1‑94 (MQ=60)

CGGGCGGTGATGAGTTATTACCAGAGCGATAAAGCGCCGCGTTCAGCACTAAAAGCGTTACTTATCCCTCATCTCGGCTCGTTGGGGTTGTACC                                                                                              <  SRR4302540.4996912/94‑1 (MQ=60)

 GGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCT                                                                                             <  SRR4302540.549432/94‑1 (MQ=60)

 GGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCT                                                                                             >  SRR4302540.3169442/1‑94 (MQ=60)

  GGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTT                                                                                            <  SRR4302540.148487/94‑1 (MQ=60)

   GCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTG                                                                                           <  SRR4302540.933943/94‑1 (MQ=60)

    CGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTGCCTTGC                                                                                          >  SRR4302540.5999474/1‑94 (MQ=60)

    CGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTTC                                                                                          >  SRR4302540.8885709/1‑94 (MQ=60)

    CGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGC                                                                                          >  SRR4302540.3498823/1‑94 (MQ=60)

    CGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTGGGGGTGTACCTTGC                                                                                          >  SRR4302540.5999475/1‑94 (MQ=60)

     GTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCC                                                                                         <  SRR4302540.2661378/94‑1 (MQ=60)

     GTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCC                                                                                         <  SRR4302540.134828/94‑1 (MQ=60)

       TGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGC                                                                                       >  SRR4302540.8109697/1‑94 (MQ=60)

        GATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCC                                                                                      <  SRR4302540.6609151/94‑1 (MQ=60)

        GATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCC                                                                                      <  SRR4302540.9427612/94‑1 (MQ=60)

        GATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTGGGGTTGTACCTTGCCGCC                                                                                      >  SRR4302540.9502154/1‑94 (MQ=60)

         ATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCG                                                                                     >  SRR4302540.3825122/1‑94 (MQ=60)

         ATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCC                                                                                     >  SRR4302540.3115924/1‑94 (MQ=60)

          TCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTGCGCCGC                                                                                    >  SRR4302540.8138599/1‑94 (MQ=60)

           CAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCC                                                                                   >  SRR4302540.240700/1‑94 (MQ=60)

           CAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCC                                                                                   <  SRR4302540.2208704/94‑1 (MQ=60)

           CAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTTTCTTGGCGCCCCC                                                                                   >  SRR4302540.830949/1‑94 (MQ=60)

            AGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCCC                                                                                  >  SRR4302540.2419948/1‑94 (MQ=60)

            AGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCGTGGGGTTGTATCTTGCCGCCcccc                                                                                  >  SRR4302540.4567153/1‑90 (MQ=60)

             GTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTTTTTCTTGCGGCCGCCAC                                                                                 >  SRR4302540.2981674/1‑94 (MQ=60)

              TTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTGGGGGTGTACCTTGCCGCCGCCACC                                                                                >  SRR4302540.619179/1‑94 (MQ=60)

              TTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTGGGGGTGTAACTTGCCGCCGCCccc                                                                                >  SRR4302540.7276171/1‑91 (MQ=60)

               TATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTTGGGTTGTACCTTTCCCCCGCCCCGC                                                                               >  SRR4302540.5910156/1‑94 (MQ=60)

               TATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTTGGGTTGTACCTTGCCGCCGCCACGC                                                                               >  SRR4302540.1376201/1‑94 (MQ=60)

               TATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGC                                                                               >  SRR4302540.1376203/1‑94 (MQ=60)

                ATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCT                                                                              >  SRR4302540.8648739/1‑94 (MQ=60)

                    CCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTT                                                                          <  SRR4302540.5916709/94‑1 (MQ=60)

                    CCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTT                                                                          <  SRR4302540.270692/94‑1 (MQ=60)

                    CCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTT                                                                          >  SRR4302540.3960832/1‑94 (MQ=60)

                      CGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTT                                                                        <  SRR4302540.6478031/94‑1 (MQ=60)

                      AGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTT                                                                        <  SRR4302540.3756419/94‑1 (MQ=60)

                      AGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTT                                                                        <  SRR4302540.7737449/94‑1 (MQ=60)

                       GAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTG                                                                       >  SRR4302540.5219771/1‑94 (MQ=60)

                        AGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCCCCCCTGTTTTTTC                                                                      >  SRR4302540.5205953/1‑94 (MQ=60)

                         GCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCA                                                                     <  SRR4302540.7294632/94‑1 (MQ=60)

                         GCAATAGAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCA                                                                     <  SRR4302540.6389162/94‑1 (MQ=60)

                          CGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAG                                                                    <  SRR4302540.5079984/94‑1 (MQ=60)

                           GATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGA                                                                   >  SRR4302540.5255270/1‑94 (MQ=60)

                            ATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGAC                                                                  >  SRR4302540.1710215/1‑94 (MQ=60)

                              AAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCG                                                                <  SRR4302540.8344086/94‑1 (MQ=60)

                              AAAGCGCAGCGTGCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCG                                                                >  SRR4302540.9996421/1‑94 (MQ=60)

                               AAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGG                                                               <  SRR4302540.1915523/94‑1 (MQ=60)

                               AAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCCCGCTGTTTTTGCCGACCGG                                                               >  SRR4302540.2313925/1‑94 (MQ=60)

                                AGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGA                                                              >  SRR4302540.8800011/1‑94 (MQ=60)

                                 GCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCCACGCTGTTTTTTCAGACCcgca                                                             >  SRR4302540.4019457/1‑90 (MQ=60)

                                 GCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAA                                                             <  SRR4302540.969810/94‑1 (MQ=60)

                                  CGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAAC                                                            <  SRR4302540.7841720/94‑1 (MQ=60)

                                   GCAGCGTTCAGCACTAAAAGCGTTTCTTATCACTCATCTCGGCTCGTTGGAGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACG                                                           <  SRR4302540.5971998/94‑1 (MQ=60)

                                   GCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACG                                                           <  SRR4302540.629722/94‑1 (MQ=60)

                                   GCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACG                                                           <  SRR4302540.9786691/94‑1 (MQ=60)

                                   GCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACG                                                           <  SRR4302540.4986701/94‑1 (MQ=60)

                                    CAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGT                                                          >  SRR4302540.5179573/1‑94 (MQ=60)

                                     ctccgtaAGCACTAAAAGCGTTACTGCCCCCTCATAGCGTCTCGTTGGGGTTGTACCTCCCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTT                                                         <  SRR4302540.1417146/87‑1 (MQ=40)

                                     CGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTT                                                         <  SRR4302540.1417147/94‑1 (MQ=60)

                                     AGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTT                                                         <  SRR4302540.7974139/94‑1 (MQ=60)

                                     AGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTGGGGTTGTACCTTGCCCCCGCCACGCTGGTTTTGCAGACCGGAACGTT                                                         >  SRR4302540.1397879/1‑94 (MQ=60)

                                        GTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGC                                                      >  SRR4302540.10065638/1‑94 (MQ=60)

                                        GTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGG                                                      >  SRR4302540.10078887/1‑94 (MQ=60)

                                         TTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCG                                                     <  SRR4302540.6658416/94‑1 (MQ=60)

                                         TTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCG                                                     <  SRR4302540.1216040/94‑1 (MQ=60)

                                           CAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTTGGGTTGTACCTTGCCGCCGCCACGCGGGTTTTGCAGACCCGAACGTTTGCGCT                                                   >  SRR4302540.8049621/1‑94 (MQ=60)

                                            AGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCTT                                                  >  SRR4302540.8220004/1‑94 (MQ=60)

                                             GCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTA                                                 <  SRR4302540.4003678/94‑1 (MQ=60)

                                              CACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCCCGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAG                                                >  SRR4302540.4258019/1‑94 (MQ=60)

                                              CACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAG                                                >  SRR4302540.5376031/1‑94 (MQ=60)

                                              CACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTAACTTTCCGCCGCCACGCTGTTTTTGGCGACCAGAACGCTTGCGCTTTG                                                >  SRR4302540.7395538/1‑94 (MQ=60)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTTGGGCTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGGTTAGC                                               >  SRR4302540.6352786/1‑94 (MQ=60)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGGTTGCGCTTAGG                                               >  SRR4302540.5906215/1‑94 (MQ=60)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCGCTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGC                                               >  SRR4302540.4583981/1‑94 (MQ=60)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCCTTGGGGTTGTACCTTGCCGCCGCCACGCTGGTTTTGCAGACCGGAACGTTTGCGCTTAGC                                               >  SRR4302540.2395227/1‑94 (MQ=60)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCCGTGGGGGTGTACCTTTCCCGCGCCACGCTGGTTTTGCCGACCGGAACGTTTGGGCTTAGG                                               >  SRR4302540.4440003/1‑94 (MQ=40)

                                               ACTAAAAGCGTTACTTATCACTCATATCGGCTCCCTGGGGTTGTACCTTGGCGCCGCCACGCTGTTTTTGCAAACCCGAACGTTTGCGCTTAGC                                               >  SRR4302540.8812409/1‑94 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTTCCGCCGCCCCGCTGTGTTTGTAGACCGGGACTTTTGCGCTTAGCG                                              >  SRR4302540.9097381/1‑94 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCTGACCGGAACGTTTGCGCTTAGCG                                              >  SRR4302540.9097380/1‑94 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTTCGCGTAGCG                                              >  SRR4302540.2390905/1‑94 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCG                                              <  SRR4302540.8765208/94‑1 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCG                                              <  SRR4302540.6984002/94‑1 (MQ=60)

                                                CTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCG                                              <  SRR4302540.2446143/94‑1 (MQ=60)

                                                 TAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCCCGCTGTTTTTTCAGACCGGAACGTTTGCGCTTAGCGC                                             >  SRR4302540.345134/1‑94 (MQ=60)

                                                 TAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGC                                             >  SRR4302540.8996330/1‑94 (MQ=60)

                                                  AAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCG                                            >  SRR4302540.309228/1‑94 (MQ=60)

                                                    AAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGAT                                          <  SRR4302540.1539171/94‑1 (MQ=60)

                                                    AAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGAT                                          <  SRR4302540.9679718/94‑1 (MQ=60)

                                                    AAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGAT                                          <  SRR4302540.6800296/94‑1 (MQ=60)

                                                    AAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGAT                                          <  SRR4302540.2308688/94‑1 (MQ=60)

                                                     AGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATG                                         <  SRR4302540.5475778/94‑1 (MQ=60)

                                                      GCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGA                                        <  SRR4302540.8045208/94‑1 (MQ=60)

                                                      GCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGA                                        <  SRR4302540.3804038/94‑1 (MQ=60)

                                                        GTTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTaagcgctagatcggaaga                                      >  SRR4302540.8958462/1‑76 (MQ=60)

                                                        GTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTTCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGGTGAGC                                      >  SRR4302540.307785/1‑94 (MQ=60)

                                                        GTTACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTTCAGACCGGAACGTTTGCGCTTAGCGCGATGAGC                                      >  SRR4302540.1898797/1‑94 (MQ=60)

                                                         TTACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCG                                     >  SRR4302540.8741820/1‑94 (MQ=60)

                                                          TACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGA                                    <  SRR4302540.1910237/94‑1 (MQ=60)

                                                          TACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGA                                    <  SRR4302540.9182117/94‑1 (MQ=60)

                                                          TACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGGCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCTTAGCGCGAggagggg                                    >  SRR4302540.5403515/1‑87 (MQ=60)

                                                           ACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAG                                   <  SRR4302540.9272180/94‑1 (MQ=60)

                                                           ACTTATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAG                                   >  SRR4302540.8843802/1‑94 (MQ=60)

                                                           ACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTTCAGACCGGAACGGTTGCGCCTAGCGCGGTGAGCGAG                                   >  SRR4302540.72214/1‑94 (MQ=60)

                                                           ACTTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAG                                   >  SRR4302540.767077/1‑94 (MQ=60)

                                                            CTTATCACTCATATCGGCTCGTTGGGGGTGTAACTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGAAGTTTGCGCTTAGCGCGATGAGCGAGT                                  >  SRR4302540.6117498/1‑94 (MQ=60)

                                                             TTATCACTCATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGAAGTTTGGGCTTAGAGCGATGAGCGgggt                                 >  SRR4302540.7483692/1‑90 (MQ=60)

                                                              TATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTA                                <  SRR4302540.3204842/94‑1 (MQ=60)

                                                              TATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGGTTGCGCTTAGCGCGATGAGCGAGTTA                                >  SRR4302540.6222149/1‑94 (MQ=60)

                                                               ATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTAC                               >  SRR4302540.1446268/1‑94 (MQ=60)

                                                               ATCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTAC                               <  SRR4302540.2626227/94‑1 (MQ=60)

                                                                TCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACA                              <  SRR4302540.3504371/94‑1 (MQ=60)

                                                                TCACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACA                              <  SRR4302540.1458199/94‑1 (MQ=60)

                                                                 CACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACAC                             <  SRR4302540.3182415/94‑1 (MQ=60)

                                                                 CACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACAC                             >  SRR4302540.3851706/1‑94 (MQ=60)

                                                                 CACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACAC                             <  SRR4302540.4721868/94‑1 (MQ=60)

                                                                  CCTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACG                            <  SRR4302540.7768686/94‑1 (MQ=60)

                                                                  ACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACG                            <  SRR4302540.6449594/94‑1 (MQ=60)

                                                                  ACTCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACG                            <  SRR4302540.2205286/94‑1 (MQ=60)

                                                                    TCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCTTAGCGCGATGAGCGAGGTACACGGC                          >  SRR4302540.2287105/1‑94 (MQ=60)

                                                                    TCATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGC                          <  SRR4302540.4724212/94‑1 (MQ=60)

                                                                     CATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCG                         <  SRR4302540.4942690/94‑1 (MQ=60)

                                                                     CATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGGACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCG                         >  SRR4302540.5634053/1‑94 (MQ=60)

                                                                     CATATCGGCTCGTTGGGGGTGTACCTTGCCGCCGCCCCGCTGTTTTTTCAGACCCGGACGGTTGCGCTTAGCGCGATGAGCGAGGTACACGGCG                         >  SRR4302540.9193436/1‑94 (MQ=60)

                                                                      ATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGA                        <  SRR4302540.2080767/94‑1 (MQ=60)

                                                                      ATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGA                        <  SRR4302540.4192210/94‑1 (MQ=60)

                                                                      ATATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGGTACAAGGCGA                        >  SRR4302540.5785450/1‑94 (MQ=60)

                                                                       TATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGAC                       <  SRR4302540.8858218/94‑1 (MQ=60)

                                                                       TATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGAC                       <  SRR4302540.7561050/94‑1 (MQ=60)

                                                                       TATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGAC                       <  SRR4302540.7561051/94‑1 (MQ=60)

                                                                       TATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGAC                       <  SRR4302540.2488350/94‑1 (MQ=60)

                                                                        ATCGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACG                      <  SRR4302540.5934359/94‑1 (MQ=60)

                                                                         TCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGC                     <  SRR4302540.5926327/94‑1 (MQ=60)

                                                                          CGGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCA                    >  SRR4302540.7205384/1‑94 (MQ=60)

                                                                           GGCTCGTTGGGGTTGTGCCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCAC                   <  SRR4302540.8515270/94‑1 (MQ=60)

                                                                           GGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGATGCAC                   >  SRR4302540.9963279/1‑94 (MQ=60)

                                                                           GGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCAC                   <  SRR4302540.1767279/94‑1 (MQ=60)

                                                                           GGCTCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCAC                   <  SRR4302540.4737855/94‑1 (MQ=60)

                                                                              TCGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTT                <  SRR4302540.2818741/94‑1 (MQ=60)

                                                                               CGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTA               >  SRR4302540.10067785/1‑94 (MQ=60)

                                                                               CGTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTA               >  SRR4302540.4697668/1‑94 (MQ=60)

                                                                                GTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTAT              <  SRR4302540.5994596/94‑1 (MQ=60)

                                                                                GTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTAT              <  SRR4302540.1607049/94‑1 (MQ=60)

                                                                                GTTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTAT              >  SRR4302540.9620362/1‑94 (MQ=60)

                                                                                 TTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATC             <  SRR4302540.715886/94‑1 (MQ=60)

                                                                                 TTGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATC             >  SRR4302540.9667397/1‑94 (MQ=60)

                                                                                  TGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCT            <  SRR4302540.2021592/94‑1 (MQ=60)

                                                                                  TGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCT            <  SRR4302540.9167821/94‑1 (MQ=60)

                                                                                  TGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCT            <  SRR4302540.5922779/94‑1 (MQ=60)

                                                                                  TGGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCT            <  SRR4302540.9167820/94‑1 (MQ=60)

                                                                                   GGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTG           <  SRR4302540.4364880/94‑1 (MQ=60)

                                                                                   GGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTG           <  SRR4302540.9478381/94‑1 (MQ=60)

                                                                                   GGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTG           <  SRR4302540.9478380/94‑1 (MQ=60)

                                                                                   GGGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTG           <  SRR4302540.6854030/94‑1 (MQ=60)

                                                                                    GGGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGG          <  SRR4302540.2063270/94‑1 (MQ=60)

                                                                                     GGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGCACGTTTGCGCTTAGCCCGATGAGCGGGTTAAACGCCGACGGCCGTTACCTGGT         >  SRR4302540.9240430/1‑94 (MQ=60)

                                                                                     GGTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGT         <  SRR4302540.4634805/94‑1 (MQ=60)

                                                                                      GTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGCCGCACGTTATCTGGTT        >  SRR4302540.2293998/1‑94 (MQ=60)

                                                                                      GTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTT        >  SRR4302540.6150432/1‑94 (MQ=60)

                                                                                      GTTGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTT        <  SRR4302540.863309/94‑1 (MQ=60)

                                                                                        TGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTA      >  SRR4302540.7377716/1‑94 (MQ=60)

                                                                                        TGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTA      <  SRR4302540.6257114/94‑1 (MQ=60)

                                                                                        TGTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTA      >  SRR4302540.4241506/1‑94 (MQ=60)

                                                                                         GTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTAT     <  SRR4302540.9309729/94‑1 (MQ=60)

                                                                                         GTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTAT     <  SRR4302540.6886287/94‑1 (MQ=60)

                                                                                         GTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTAT     <  SRR4302540.2064102/94‑1 (MQ=60)

                                                                                         GTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTAT     >  SRR4302540.7335205/1‑94 (MQ=60)

                                                                                         GTACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTAT     >  SRR4302540.5639986/1‑94 (MQ=60)

                                                                                           ACCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGG   >  SRR4302540.2018497/1‑94 (MQ=60)

                                                                                            TCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGC  <  SRR4302540.3640721/94‑1 (MQ=60)

                                                                                            TCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGC  <  SRR4302540.3640722/94‑1 (MQ=60)

                                                                                            CCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGC  >  SRR4302540.6639410/1‑94 (MQ=60)

TGGGCGTTGATCAGTTATTACCAGAGCGATAAAGCGCAGCGTTCAGCACTAAAAGCGTTACTTATCACTCATATCGGCTCGTTGGGGTTGTATCTTGCCGCCGCCACGCTGTTTTTGCAGACCGGAACGTTTGCGCTTAGCGCGATGAGCGAGTTACACGGCGACGCACGTTATCTGGTTTATGGC  >  NC_000913/2603278‑2603463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`