Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,630,942	T→C	K383K (AAA→AAG)	guaB ←	IMP dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,630,942	0	T	C	100.0%	844.3 / NA	255	K383K (AAA→AAG)	guaB	IMP dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (142/113); total (142/113)

Only 100 of 259 total aligned reads displayed.

CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC  >  NC_000913/2630852‑2631031

cACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGActt                                                                                         >  2:7146239/1‑93 (MQ=255)

 aCCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTg                                                                                        <  1:10047438/93‑1 (MQ=255)

  ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt                                                                                       <  2:5293682/93‑1 (MQ=255)

  ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt                                                                                       >  1:2555779/1‑93 (MQ=255)

  ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt                                                                                       >  1:8196526/1‑93 (MQ=255)

   cAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTa                                                                                      <  1:8728625/93‑1 (MQ=255)

    aGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTaa                                                                                     <  1:5872095/93‑1 (MQ=255)

      tttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa                                                                                   <  2:2290733/93‑1 (MQ=255)

      tttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa                                                                                   >  1:6744650/1‑93 (MQ=255)

      gttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa                                                                                   <  2:4115015/92‑1 (MQ=255)

       ttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGaa                                                                                  <  1:6161542/93‑1 (MQ=255)

        tGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAc                                                                                 <  2:5883216/93‑1 (MQ=255)

        tGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAc                                                                                 <  1:3778075/93‑1 (MQ=255)

         gTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACg                                                                                >  2:4589828/1‑93 (MQ=255)

         gTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACg                                                                                <  1:6130271/93‑1 (MQ=255)

          tCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACgg                                                                               <  2:4232718/93‑1 (MQ=255)

          tCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACgg                                                                               >  2:4516239/1‑93 (MQ=255)

            ggCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGcc                                                                             >  1:1897678/1‑93 (MQ=255)

             gCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGccc                                                                            <  1:7999107/93‑1 (MQ=255)

               aGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTg                                                                          <  1:8102126/93‑1 (MQ=255)

               aGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTg                                                                          <  2:9226710/93‑1 (MQ=255)

                gCGTTATCGCTCTGGAAATAACGGTCAGATGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg                                                                         >  1:9737652/1‑93 (MQ=255)

                gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg                                                                         >  1:3055836/1‑93 (MQ=255)

                gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg                                                                         >  1:6365153/1‑93 (MQ=255)

                gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg                                                                         >  2:894519/1‑93 (MQ=255)

                gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg                                                                         >  2:149454/1‑93 (MQ=255)

                   ttATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTag                                                                      >  2:6890352/1‑93 (MQ=255)

                   ttATCGCTCTGGAAATAACGGGCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTag                                                                      >  1:1803114/1‑93 (MQ=255)

                   ttATCGCTCTAGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTag                                                                      >  2:6551648/1‑93 (MQ=255)

                    tATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTaga                                                                     >  1:8369556/1‑93 (MQ=255)

                       cGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGtt                                                                  <  2:7714796/93‑1 (MQ=255)

                         ctctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCg                                                                <  2:6256903/93‑1 (MQ=255)

                          tctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGa                                                               <  2:8726628/93‑1 (MQ=255)

                          tctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGa                                                               >  1:777301/1‑93 (MQ=255)

                           ctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAt                                                              >  2:3498015/1‑93 (MQ=255)

                            tGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAtt                                                             <  1:3856224/93‑1 (MQ=255)

                             ggAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAttt                                                            <  2:9719236/93‑1 (MQ=255)

                              gAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTc                                                           <  1:8847092/93‑1 (MQ=255)

                              gAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTc                                                           <  1:2034534/93‑1 (MQ=255)

                                    aCGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCgg                                                     <  2:1330197/93‑1 (MQ=255)

                                    aCGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCgg                                                     >  1:4641656/1‑93 (MQ=255)

                                    aCGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCgg                                                     >  1:25814/1‑93 (MQ=255)

                                       gccAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGgaga                                                  >  2:2633080/3‑93 (MQ=255)

                                        tCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAt                                                 >  2:1242285/1‑93 (MQ=255)

                                         cAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAtt                                                <  2:8829112/93‑1 (MQ=255)

                                         cAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGAAGAGGTCGATTCGACCCGGAGAtt                                                >  2:7221741/1‑93 (MQ=255)

                                           gagGAACCTTTGGACATAGCGCCCAGGGCACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATGTCACGCGGAGCttct                                              >  2:3627858/1‑93 (MQ=255)

                                            agGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAttctt                                             >  2:4278211/1‑93 (MQ=255)

                                            agGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAttctt                                             >  2:6561699/1‑93 (MQ=255)

                                              gAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCa                                           >  1:7143191/1‑93 (MQ=255)

                                              gAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCa                                           >  1:798853/1‑93 (MQ=255)

                                              gAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCa                                           >  2:3947934/1‑93 (MQ=255)

                                               aaCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAg                                          <  1:1461574/93‑1 (MQ=255)

                                               aaCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAg                                          <  2:9848800/93‑1 (MQ=255)

                                                aCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGt                                         <  1:9360759/93‑1 (MQ=255)

                                                 ccTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTa                                        <  2:4630699/93‑1 (MQ=255)

                                                 ccTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTa                                        <  2:8566049/93‑1 (MQ=255)

                                                 ccTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTa                                        >  2:2931960/1‑93 (MQ=255)

                                                   tttGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCCGAGATTCTTCAGTAcc                                      >  2:8216511/1‑93 (MQ=255)

                                                      ggACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGc                                   <  2:6219164/93‑1 (MQ=255)

                                                       gACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGcc                                  >  1:3419212/1‑93 (MQ=255)

                                                       gACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGcc                                  >  1:5986946/1‑93 (MQ=255)

                                                       gACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGcc                                  >  2:6305718/1‑93 (MQ=255)

                                                         cATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAg                                >  1:4339402/1‑93 (MQ=255)

                                                         cATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAg                                <  2:5420846/93‑1 (MQ=255)

                                                           tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCTCCCGTAGATTCTTCAGTACCCGCCAGCa                              <  2:6788307/93‑1 (MQ=255)

                                                           tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCa                              <  2:2113914/93‑1 (MQ=255)

                                                           tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCa                              >  1:5145941/1‑93 (MQ=255)

                                                            cgcgCCCAGGGAACCCATACCACGGTAAGACTTGTAAGACCGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTATTCAGTACCCGCCAGCAt                             <  2:2383239/93‑1 (MQ=255)

                                                              cgcCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATgg                           <  1:6503000/93‑1 (MQ=255)

                                                               gcCCAGGGAACCCATCCCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGa                          <  2:7987593/93‑1 (MQ=255)

                                                               gcCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGa                          <  1:1650565/93‑1 (MQ=255)

                                                                 ccAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAc                        <  1:2412437/93‑1 (MQ=255)

                                                                 ccAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAc                        >  1:1052371/1‑93 (MQ=255)

                                                                 ccAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAc                        >  1:3551542/1‑93 (MQ=255)

                                                                  cAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAcc                       >  1:1387536/1‑93 (MQ=255)

                                                                  cAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAcc                       >  2:3790471/1‑93 (MQ=255)

                                                                  cAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAcc                       <  1:9040277/93‑1 (MQ=255)

                                                                  cAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAcc                       >  2:3234957/1‑93 (MQ=255)

                                                                    gggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTa                     >  1:8543593/1‑93 (MQ=255)

                                                                    gggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTa                     <  1:2761511/93‑1 (MQ=255)

                                                                     ggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAc                    >  1:4772907/1‑93 (MQ=255)

                                                                     ggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAc                    >  1:1236609/1‑93 (MQ=255)

                                                                     ggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAc                    <  2:1876551/93‑1 (MQ=255)

                                                                       gaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGTTTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa                  <  1:3133942/92‑1 (MQ=255)

                                                                       aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa                  <  2:949770/93‑1 (MQ=255)

                                                                       aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa                  >  1:3173989/1‑93 (MQ=255)

                                                                          ccATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCTATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCa               >  1:5226993/1‑93 (MQ=255)

                                                                           cATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAc              >  2:6923470/1‑93 (MQ=255)

                                                                           cATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAc              <  1:6989182/93‑1 (MQ=255)

                                                                            ctACCCCGGTAAGACTTGTAAGACCGGCCCTGGTAGAGTTCGATTTCACCGGGAGATTCTTCAGTCCCCGCCAGCATGGAACCTACCATCAcc             <  1:5654604/92‑1 (MQ=255)

                                                                            aTACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAcc             >  2:3153517/1‑93 (MQ=255)

                                                                             tACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACcg            <  2:325932/93‑1 (MQ=255)

                                                                               ccACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACcgcg          >  1:7566582/1‑93 (MQ=255)

                                                                                cACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCgcgc         <  1:6833019/93‑1 (MQ=255)

                                                                                 aCGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCt        <  1:2180814/93‑1 (MQ=255)

                                                                                   ggTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTg      >  1:2717765/1‑93 (MQ=255)

                                                                                     tAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTgcg    >  2:1003663/1‑93 (MQ=255)

                                                                                       aGACTTGTAAGAACGGCCCTGTTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGcc  <  2:6127635/93‑1 (MQ=255)

                                                                                       aGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGcc  >  1:2185784/1‑93 (MQ=255)

CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC  >  NC_000913/2630852‑2631031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG  >  NC_000913/2630850‑2631035

GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACT                                                                                              >  SRR4302540.1649235/1‑94 (MQ=60)

   ACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGT                                                                                           <  SRR4302540.10164233/94‑1 (MQ=60)

   ACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGT                                                                                           >  SRR4302540.2583314/1‑94 (MQ=60)

   ACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGT                                                                                           >  SRR4302540.8291782/1‑94 (MQ=60)

     CAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAA                                                                                         <  SRR4302540.8829985/94‑1 (MQ=60)

     CAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAA                                                                                         >  SRR4302540.7003221/1‑94 (MQ=60)

      AGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAG                                                                                        <  SRR4302540.5937000/94‑1 (MQ=60)

      AGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAG                                                                                        <  SRR4302540.2174610/94‑1 (MQ=60)

       GTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATGGCGCCCAGGGAACCCATACAACGGTAAGACTTGTAAGA                                                                                       >  SRR4302540.5865299/1‑94 (MQ=60)

       GTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGA                                                                                       >  SRR4302540.6819175/1‑94 (MQ=60)

       GTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGA                                                                                       <  SRR4302540.5975407/94‑1 (MQ=60)

       GTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGA                                                                                       >  SRR4302540.6615211/1‑94 (MQ=60)

        TTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAA                                                                                      >  SRR4302540.1438974/1‑94 (MQ=60)

        TTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAA                                                                                      <  SRR4302540.8439683/94‑1 (MQ=60)

         TTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAC                                                                                     <  SRR4302540.6230200/94‑1 (MQ=60)

         TTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAC                                                                                     <  SRR4302540.2763601/94‑1 (MQ=60)

          TGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACG                                                                                    >  SRR4302540.5741477/1‑94 (MQ=60)

          TGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACG                                                                                    <  SRR4302540.3819290/94‑1 (MQ=60)

           GTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGG                                                                                   >  SRR4302540.3136042/1‑94 (MQ=60)

           GTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGG                                                                                   <  SRR4302540.6198552/94‑1 (MQ=60)

             CGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCC                                                                                 >  SRR4302540.1918442/1‑94 (MQ=60)

             CGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCC                                                                                 >  SRR4302540.9632997/1‑94 (MQ=60)

              GGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCC                                                                                >  SRR4302540.9257992/1‑94 (MQ=60)

              GGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCC                                                                                >  SRR4302540.6195887/1‑94 (MQ=60)

               GCAGCTTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGACCCCATACCACGGTAAGACTTGTAAGAACGGCCCT                                                                               <  SRR4302540.6228315/94‑1 (MQ=60)

               GCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCT                                                                               <  SRR4302540.8092218/94‑1 (MQ=60)

               GCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCT                                                                               >  SRR4302540.6891505/1‑94 (MQ=60)

                CAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTG                                                                              <  SRR4302540.2134112/94‑1 (MQ=60)

                CAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTG                                                                              <  SRR4302540.322121/94‑1 (MQ=60)

                 AGNGNTNTCNCTCTGGANATNNNGGNCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             <  SRR4302540.1195551/94‑1 (MQ=60)

                 AGCGTTATCGCTCTGGAAATAACGGTCAGATGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             >  SRR4302540.9851973/1‑94 (MQ=60)

                 AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             >  SRR4302540.3089361/1‑94 (MQ=60)

                 AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             >  SRR4302540.8200006/1‑94 (MQ=60)

                 AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             <  SRR4302540.8196163/94‑1 (MQ=60)

                 AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG                                                                             >  SRR4302540.6436025/1‑94 (MQ=60)

                    GTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAG                                                                          >  SRR4302540.2608963/1‑94 (MQ=60)

                    GTTATCGCTCTGGAAATAACGGGCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAG                                                                          >  SRR4302540.1822753/1‑94 (MQ=60)

                     TTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGA                                                                         >  SRR4302540.4101998/1‑94 (MQ=60)

                     TTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGA                                                                         >  SRR4302540.8466690/1‑94 (MQ=60)

                      TATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAG                                                                        >  SRR4302540.3117124/1‑94 (MQ=60)

                       ATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAAACCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGT                                                                       <  SRR4302540.6561867/94‑1 (MQ=60)

                         CGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTC                                                                     <  SRR4302540.2688506/94‑1 (MQ=60)

                          GCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCG                                                                    <  SRR4302540.3182201/94‑1 (MQ=60)

                           CTCTGGAAATAACGGTCTGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA                                                                   <  SRR4302540.9584530/94‑1 (MQ=60)

                           CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA                                                                   >  SRR4302540.3235715/1‑94 (MQ=60)

                           CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA                                                                   >  SRR4302540.1052678/1‑94 (MQ=60)

                           CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA                                                                   >  SRR4302540.7343572/1‑94 (MQ=60)

                           CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA                                                                   >  SRR4302540.785571/1‑94 (MQ=60)

                            TCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAT                                                                  <  SRR4302540.7930448/94‑1 (MQ=60)

                             CTGGAAATAACGGTCAGAGGACCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT                                                                 <  SRR4302540.8469690/94‑1 (MQ=60)

                             CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCtgggaaaggtcgattt                                                                 >  SRR4302540.1467752/1‑78 (MQ=60)

                             CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT                                                                 <  SRR4302540.2009235/94‑1 (MQ=60)

                              TGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTT                                                                <  SRR4302540.3898149/94‑1 (MQ=60)

                                GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA                                                              <  SRR4302540.2056474/94‑1 (MQ=60)

                                GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA                                                              >  SRR4302540.6286510/1‑94 (MQ=60)

                                GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA                                                              <  SRR4302540.8949440/94‑1 (MQ=60)

                                  AATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACC                                                            >  SRR4302540.2289539/1‑94 (MQ=60)

                                   ATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCC                                                           >  SRR4302540.1082928/1‑94 (MQ=60)

                                    TAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCG                                                          <  SRR4302540.6514232/94‑1 (MQ=60)

                                     AACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGG                                                         >  SRR4302540.26092/1‑94 (MQ=60)

                                     AACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGG                                                         >  SRR4302540.4691353/1‑94 (MQ=60)

                                       CGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAG                                                       <  SRR4302540.1213381/94‑1 (MQ=60)

                                        GGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGA                                                      >  SRR4302540.8886467/1‑94 (MQ=60)

                                         GTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAT                                                     >  SRR4302540.4459427/1‑94 (MQ=60)

                                           CAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTC                                                   >  SRR4302540.2546385/1‑94 (MQ=60)

                                           CAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTC                                                   >  SRR4302540.2546386/1‑94 (MQ=60)

                                             GAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGATCGACTTCACCCGGAGATTCTT                                                 >  SRR4302540.9083244/1‑94 (MQ=60)

                                               GGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCA                                               >  SRR4302540.807335/1‑94 (MQ=60)

                                               GGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCA                                               >  SRR4302540.7222779/1‑94 (MQ=60)

                                                GAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAG                                              <  SRR4302540.8613619/94‑1 (MQ=60)

                                                GAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAG                                              <  SRR4302540.9921364/94‑1 (MQ=60)

                                                 AACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGT                                             <  SRR4302540.1477504/94‑1 (MQ=60)

                                                  ACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTA                                            <  SRR4302540.9472234/94‑1 (MQ=60)

                                                  ACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTA                                            >  SRR4302540.8085145/1‑94 (MQ=60)

                                                   CCTTTGGACATCGCGCCCAGGGACCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTAC                                           <  SRR4302540.6828224/94‑1 (MQ=60)

                                                       TGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGC                                       <  SRR4302540.4165092/94‑1 (MQ=60)

                                                        GGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCC                                      >  SRR4302540.6053258/1‑94 (MQ=60)

                                                        GGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCC                                      >  SRR4302540.3456411/1‑94 (MQ=60)

                                                          ACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAG                                    >  SRR4302540.4386643/1‑94 (MQ=60)

                                                           CATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGC                                   >  SRR4302540.5303180/1‑94 (MQ=60)

                                                           CATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGC                                   <  SRR4302540.1908303/94‑1 (MQ=60)

                                                           CATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGC                                   >  SRR4302540.1914618/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.7860367/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.1286783/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.2638497/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.3062011/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.3535897/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.3876927/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCA                                  >  SRR4302540.5201683/1‑94 (MQ=60)

                                                            ATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGACAGCA                                  >  SRR4302540.230608/1‑94 (MQ=60)

                                                             TCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCGTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCAT                                 <  SRR4302540.7205559/94‑1 (MQ=60)

                                                              CGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGCTTCTTCAGTACCCGCCAGCATG                                <  SRR4302540.1802316/94‑1 (MQ=60)

                                                                CGCCCAGGGACCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGA                              <  SRR4302540.3748398/94‑1 (MQ=60)

                                                                CGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGA                              <  SRR4302540.6575287/94‑1 (MQ=60)

                                                                CGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGA                              <  SRR4302540.1639250/94‑1 (MQ=60)

                                                                 GCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAA                             <  SRR4302540.1668564/94‑1 (MQ=60)

                                                                  CCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAC                            >  SRR4302540.1063081/1‑94 (MQ=60)

                                                                  CCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAC                            >  SRR4302540.3590346/1‑94 (MQ=60)

                                                                   CCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACC                           >  SRR4302540.1402380/1‑94 (MQ=60)

                                                                   CCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACC                           <  SRR4302540.2438442/94‑1 (MQ=60)

                                                                    CAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCT                          <  SRR4302540.9148794/94‑1 (MQ=60)

                                                                    CAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCT                          >  SRR4302540.8915743/1‑94 (MQ=60)

                                                                     AGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTA                         >  SRR4302540.7136736/1‑94 (MQ=60)

                                                                     AGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTA                         >  SRR4302540.8642857/1‑94 (MQ=60)

                                                                     AGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTA                         <  SRR4302540.8438488/94‑1 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGCTTTCACCCGGAGACTCTTCAGTACCCGCCAGCATGGACACTAC                        >  SRR4302540.5008929/1‑94 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTATCCGCCAGCATGGAACCTAC                        >  SRR4302540.5008930/1‑94 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAC                        >  SRR4302540.1249236/1‑94 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAC                        >  SRR4302540.4823897/1‑94 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAC                        <  SRR4302540.2791348/94‑1 (MQ=60)

                                                                      GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAC                        >  SRR4302540.4823896/1‑94 (MQ=60)

                                                                       GGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACC                       >  SRR4302540.367556/1‑94 (MQ=60)

                                                                        GAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCA                      >  SRR4302540.3208493/1‑94 (MQ=60)

                                                                         GACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGTTTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT                     <  SRR4302540.3168132/94‑1 (MQ=60)

                                                                         AACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT                     >  SRR4302540.5484048/1‑94 (MQ=60)

                                                                          ACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATC                    >  SRR4302540.8815782/1‑94 (MQ=60)

                                                                          ACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATC                    >  SRR4302540.8028248/1‑94 (MQ=60)

                                                                           CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCTATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA                   >  SRR4302540.5283994/1‑94 (MQ=60)

                                                                           CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA                   >  SRR4302540.8168296/1‑94 (MQ=60)

                                                                           CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA                   >  SRR4302540.5282826/1‑94 (MQ=60)

                                                                             CATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACC                 <  SRR4302540.7066771/94‑1 (MQ=60)

                                                                              CTACCCCGGTAAGACTTGTAAGACCGGCCCTGGTAGAGTTCGATTTCACCGGGAGATTCTTCAGTCCCCGCCAGCATGGAACCTACCATCACCG                <  SRR4302540.5716860/94‑1 (MQ=60)

                                                                              ATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCG                >  SRR4302540.7243141/1‑94 (MQ=60)

                                                                               atCCACGGTAAGACTTGTAAGAACGGCCCTTGTAGGGTTTCATTTCCCCCGGAGATTCTTCCGGACCCGCCAGCATGGAACCTACCATCACCGC               <  SRR4302540.8343729/92‑1 (MQ=60)

                                                                                CCCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCG              <  SRR4302540.4560271/94‑1 (MQ=60)

                                                                                ACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCG              >  SRR4302540.7651458/1‑94 (MQ=60)

                                                                                 CCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGC             >  SRR4302540.9413722/1‑94 (MQ=60)

                                                                                  CACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCT            >  SRR4302540.6430441/1‑94 (MQ=60)

                                                                                  CACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCT            <  SRR4302540.6908697/94‑1 (MQ=60)

                                                                                   CCGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTT           <  SRR4302540.2204339/94‑1 (MQ=60)

                                                                                   ACGGTAAGACTTGTGAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCCGTACCCGCCAGCCTGGCACCTAACATCACCGCGCTG           >  SRR4302540.3049238/1‑94 (MQ=60)

                                                                                   ACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTT           <  SRR4302540.2204338/94‑1 (MQ=60)

                                                                                    CGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTG          >  SRR4302540.2747068/1‑94 (MQ=60)

                                                                                     GGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGC         <  SRR4302540.8108878/94‑1 (MQ=60)

                                                                                       TAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGC       >  SRR4302540.6093180/1‑94 (MQ=60)

                                                                                        AAGAGTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC      <  SRR4302540.168589/94‑1 (MQ=60)

                                                                                        AAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC      >  SRR4302540.2209380/1‑94 (MQ=60)

                                                                                         AGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCA     >  SRR4302540.9007639/1‑94 (MQ=60)

                                                                                            CTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG  >  SRR4302540.927192/1‑94 (MQ=60)

GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG  >  NC_000913/2630850‑2631035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`