Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,630,942 |
T→C |
K383K (AAA→AAG) |
guaB ← |
IMP dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,630,942 | 0 | T | C | 99.6%
| 783.5
/ NA
| 239 | K383K (AAA→AAG) | guaB | IMP dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (131/107); total (132/107) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 247 total aligned reads displayed.
CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC > NC_000913/2630852‑2631031
|
aCCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTg > 1:2954415/1‑93 (MQ=255)
cctgTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt < 2:3036249/90‑1 (MQ=255)
ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt < 1:4484189/93‑1 (MQ=255)
ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt > 2:1337252/1‑93 (MQ=255)
ccAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGt < 2:4721235/93‑1 (MQ=255)
aGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTaa > 1:4942983/1‑93 (MQ=255)
aGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTaa < 1:2517651/93‑1 (MQ=255)
aGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTaa > 2:4857170/1‑93 (MQ=255)
gTTTGTCGGCGGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCTTACCACGGTAAGACTTGTAAg < 2:4010815/93‑1 (MQ=255)
gTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAg < 2:5484563/93‑1 (MQ=255)
tttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa > 2:5948199/1‑93 (MQ=255)
tttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa < 2:3642219/93‑1 (MQ=255)
tttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACAGCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGa < 2:442820/93‑1 (MQ=255)
ttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGaa < 1:2322092/93‑1 (MQ=255)
ttGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGaa < 2:2722646/93‑1 (MQ=255)
tGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGCAc > 2:1889782/1‑93 (MQ=255)
tGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAc < 2:2925985/93‑1 (MQ=255)
gTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACg < 1:3094853/93‑1 (MQ=255)
gcGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACgg < 1:3808776/92‑1 (MQ=255)
gCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTGTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGccc < 1:4640259/93‑1 (MQ=255)
cAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCt > 2:3938070/1‑93 (MQ=255)
aGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTg < 1:3503123/93‑1 (MQ=255)
gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg > 1:3939519/1‑93 (MQ=255)
gCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTgg > 2:3270219/1‑93 (MQ=255)
ttATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTag > 1:3309011/1‑93 (MQ=255)
aTCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTagag < 2:2587377/93‑1 (MQ=255)
aTCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTagag > 1:5793040/1‑93 (MQ=255)
cGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGtt < 1:4098328/93‑1 (MQ=255)
gCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTc > 2:80954/1‑93 (MQ=255)
gCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTc > 1:5180876/1‑93 (MQ=255)
gCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTc > 2:3602517/1‑93 (MQ=255)
tctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGa > 2:2680360/1‑93 (MQ=255)
tctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGa > 1:1543195/1‑93 (MQ=255)
tctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGa > 1:1782894/1‑93 (MQ=255)
ctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAt > 1:4524292/1‑93 (MQ=255)
ctGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAt < 1:5843007/93‑1 (MQ=255)
tGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAtt > 1:5556911/1‑93 (MQ=255)
tGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAtt < 2:463509/93‑1 (MQ=255)
ggAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAttt > 2:6173832/1‑93 (MQ=255)
ggAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGACCCTGGGAGAGGTCGAttt > 2:1298572/1‑93 (MQ=255)
gAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTc < 1:4994343/93‑1 (MQ=255)
aaaTAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCa > 1:384161/1‑93 (MQ=255)
aaTAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCAc < 1:5993389/93‑1 (MQ=255)
aaTAACGGTCAGAGCAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCAc < 1:4264860/93‑1 (MQ=255)
aTAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCAcc < 1:4059017/93‑1 (MQ=255)
aTAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCAcc > 1:6123460/1‑93 (MQ=255)
tAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCAccc < 2:4341072/93‑1 (MQ=255)
aaaCGCTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGGAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCcccc < 2:2262400/92‑1 (MQ=255)
aaCGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCg > 1:5655938/1‑93 (MQ=255)
aCGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCgg > 1:1604436/1‑93 (MQ=255)
cGGTCAGAGCAACCTTTGGCCATCGCGCTCAGGGAACCCATACCACGGTAAGACTTGTAAGACCGGCCCTGGTAGAGTTCGATTTCACCCCga < 2:3441245/93‑1 (MQ=255)
tCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAt > 2:3819258/1‑93 (MQ=255)
tCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAt > 1:1033549/1‑93 (MQ=255)
cAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAtt > 2:1758407/1‑93 (MQ=255)
agagGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAttc < 2:2985392/93‑1 (MQ=255)
agagGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAttc < 2:2438926/93‑1 (MQ=255)
gagGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAttct > 2:391145/1‑93 (MQ=255)
aaCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAg < 1:635614/93‑1 (MQ=255)
aCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGt > 2:5287989/1‑93 (MQ=255)
aCCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGt < 2:5919139/93‑1 (MQ=255)
ccTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTa > 1:2849493/1‑93 (MQ=255)
cTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTAc > 2:3183575/1‑93 (MQ=255)
tttGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTAcc > 1:2119964/1‑93 (MQ=255)
ttGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTAccc < 1:3279956/93‑1 (MQ=255)
tGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCg > 2:4573106/1‑93 (MQ=255)
ggACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGc < 1:2806550/93‑1 (MQ=255)
aCATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCa < 2:1057140/93‑1 (MQ=255)
aCATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCa < 2:5103363/93‑1 (MQ=255)
tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCa < 2:1558134/93‑1 (MQ=255)
tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCa < 1:4000571/93‑1 (MQ=255)
tCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCa < 1:6209024/93‑1 (MQ=255)
cgcgCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCAt > 2:2779889/1‑93 (MQ=255)
gcgcCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATg > 2:3105052/1‑93 (MQ=255)
gcCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGa < 1:2651253/93‑1 (MQ=255)
cccAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGaa > 2:2893210/1‑93 (MQ=255)
cAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAAcc > 1:1262023/1‑93 (MQ=255)
ggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAc < 2:1127100/93‑1 (MQ=255)
ggAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCCAc > 2:3880350/1‑93 (MQ=255)
gAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTAcc > 2:584072/1‑93 (MQ=255)
aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa < 1:102050/93‑1 (MQ=255)
aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa < 1:1825631/93‑1 (MQ=255)
aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa < 1:5134419/93‑1 (MQ=255)
aaCCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCa < 1:5097348/93‑1 (MQ=255)
ccATCCCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCa < 2:4172184/93‑1 (MQ=255)
ccATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCa > 1:5443169/1‑93 (MQ=255)
ccATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCa > 1:4242392/1‑93 (MQ=255)
cATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAc > 1:2229298/1‑93 (MQ=255)
cATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAc < 2:4906639/93‑1 (MQ=255)
aTACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAcc > 2:1454742/1‑93 (MQ=255)
aTACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAcc < 1:2729270/93‑1 (MQ=255)
tACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACcg > 2:5349050/1‑93 (MQ=255)
tACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCAGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACcg < 1:532671/93‑1 (MQ=255)
aCCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACcgc < 1:3156294/93‑1 (MQ=255)
aCGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCt < 1:6042862/93‑1 (MQ=255)
gTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTgc < 2:5204658/93‑1 (MQ=255)
gTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTgc < 1:5256720/93‑1 (MQ=255)
gTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTgc > 2:5556478/1‑93 (MQ=255)
tAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTgcg > 1:3694274/1‑93 (MQ=255)
aGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGcc > 2:579491/1‑93 (MQ=255)
aGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGcc < 2:2571451/93‑1 (MQ=255)
|
CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCC > NC_000913/2630852‑2631031
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG > NC_000913/2630850‑2631035
|
GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACT > SRR4302533.6067044/1‑94 (MQ=60)
GCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTT < SRR4302533.4025876/94‑1 (MQ=60)
CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTG < SRR4302533.3842263/94‑1 (MQ=60)
CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTG > SRR4302533.3191158/1‑94 (MQ=60)
CACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTG > SRR4302533.2972483/1‑94 (MQ=60)
CCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTA > SRR4302533.5130515/1‑94 (MQ=60)
CCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTA > SRR4302533.3316003/1‑94 (MQ=60)
CCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTA < SRR4302533.4511345/94‑1 (MQ=60)
CAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAA > SRR4302533.4972907/1‑94 (MQ=60)
AGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAG < SRR4302533.2533164/94‑1 (MQ=60)
AGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAG < SRR4302533.5305111/94‑1 (MQ=60)
AGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAG < SRR4302533.4076316/94‑1 (MQ=60)
TTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAC < SRR4302533.5921761/94‑1 (MQ=60)
TTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAC < SRR4302533.2336464/94‑1 (MQ=60)
TTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAAC < SRR4302533.1976027/94‑1 (MQ=60)
GTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGG < SRR4302533.3113879/94‑1 (MQ=60)
GTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGG < SRR4302533.2111096/94‑1 (MQ=60)
GCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGC < SRR4302533.3832076/94‑1 (MQ=60)
CGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCC > SRR4302533.3869076/1‑94 (MQ=60)
GGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCC < SRR4302533.6252844/94‑1 (MQ=60)
GCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCT < SRR4302533.1796045/94‑1 (MQ=60)
GCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTGTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCT < SRR4302533.4668375/94‑1 (MQ=60)
AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG < SRR4302533.3524720/94‑1 (MQ=60)
AGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGG > SRR4302533.3963561/1‑94 (MQ=60)
GCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGT < SRR4302533.112221/94‑1 (MQ=60)
GCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGT < SRR4302533.2542305/94‑1 (MQ=60)
GCGTTATCGCTCCGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGT < SRR4302533.4040474/94‑1 (MQ=60)
CGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTA > SRR4302533.3949335/1‑94 (MQ=60)
CGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTA < SRR4302533.2832071/94‑1 (MQ=60)
GTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAG > SRR4302533.3329443/1‑94 (MQ=60)
GTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAG > SRR4302533.5268379/1‑94 (MQ=60)
TATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAG > SRR4302533.5828037/1‑94 (MQ=60)
ATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGT > SRR4302533.3779235/1‑94 (MQ=60)
ATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGT < SRR4302533.2661175/94‑1 (MQ=60)
ATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGT < SRR4302533.2243959/94‑1 (MQ=60)
ATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGCCCCTGGTAGAGT > SRR4302533.5290199/1‑94 (MQ=60)
CGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTC > SRR4302533.5212163/1‑94 (MQ=60)
CGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTC < SRR4302533.4123274/94‑1 (MQ=60)
CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA > SRR4302533.1552489/1‑94 (MQ=60)
CTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGA > SRR4302533.1793741/1‑94 (MQ=60)
TCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGAT > SRR4302533.4551681/1‑94 (MQ=60)
CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT > SRR4302533.5590493/1‑94 (MQ=60)
CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT < SRR4302533.5063235/94‑1 (MQ=60)
CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT > SRR4302533.3421405/1‑94 (MQ=60)
CTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATT < SRR4302533.5878333/94‑1 (MQ=60)
GGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTC > SRR4302533.2714081/1‑94 (MQ=60)
GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA > SRR4302533.386479/1‑94 (MQ=60)
GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA < SRR4302533.5024622/94‑1 (MQ=60)
GAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCA < SRR4302533.5518650/94‑1 (MQ=60)
AATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACC > SRR4302533.6160375/1‑94 (MQ=60)
AATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACC < SRR4302533.6029692/94‑1 (MQ=60)
AATAACGGTCAGAGCAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACC < SRR4302533.4290545/94‑1 (MQ=60)
ATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCC < SRR4302533.3786700/94‑1 (MQ=60)
ATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCC < SRR4302533.4083725/94‑1 (MQ=60)
TAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCG < SRR4302533.6063582/94‑1 (MQ=60)
TAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCG > SRR4302533.5690116/1‑94 (MQ=60)
AACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGG > SRR4302533.4090564/1‑94 (MQ=60)
AACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGG > SRR4302533.1614149/1‑94 (MQ=60)
GGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGA < SRR4302533.3615367/94‑1 (MQ=60)
GTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAT > SRR4302533.4895015/1‑94 (MQ=60)
GTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGAT > SRR4302533.1039629/1‑94 (MQ=60)
CAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTC > SRR4302533.5497819/1‑94 (MQ=60)
AGGAACCTTGGGACATCGCGCCCATGGAACCCATACCACGGTAAGATTAGTTAGAACGGCCCTGGTATAGTTCGATTTCACCCGGAGATTCTTC > SRR4302533.6345030/1‑94 (MQ=60)
GAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAG > SRR4302533.498927/1‑94 (MQ=60)
GAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAG > SRR4302533.1028396/1‑94 (MQ=60)
AACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGT > SRR4302533.3128293/1‑94 (MQ=60)
AACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGT < SRR4302533.639352/94‑1 (MQ=60)
ACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTA > SRR4302533.429519/1‑94 (MQ=60)
ACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTA > SRR4302533.2867026/1‑94 (MQ=60)
CCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTAC < SRR4302533.4223769/94‑1 (MQ=60)
CTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACC > SRR4302533.4278846/1‑94 (MQ=60)
CTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACC > SRR4302533.4597230/1‑94 (MQ=60)
CTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACC > SRR4302533.1553132/1‑94 (MQ=60)
CTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACC > SRR4302533.1773554/1‑94 (MQ=60)
CTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACC > SRR4302533.2133038/1‑94 (MQ=60)
TTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCG < SRR4302533.3300205/94‑1 (MQ=60)
TTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCG > SRR4302533.5739060/1‑94 (MQ=60)
TTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCG < SRR4302533.6221988/94‑1 (MQ=60)
GGACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCC < SRR4302533.2823821/94‑1 (MQ=60)
ACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAG < SRR4302533.3211746/94‑1 (MQ=60)
ACATCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAG > SRR4302533.5726993/1‑94 (MQ=60)
TCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCAT < SRR4302533.840569/94‑1 (MQ=60)
TCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCAT < SRR4302533.4024930/94‑1 (MQ=60)
TCGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCAT < SRR4302533.6246264/94‑1 (MQ=60)
CGCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATG > SRR4302533.5864241/1‑94 (MQ=60)
GCGCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGG > SRR4302533.3385974/1‑94 (MQ=60)
GCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAA > SRR4302533.2523020/1‑94 (MQ=60)
GCCCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAA < SRR4302533.2667540/94‑1 (MQ=60)
CCAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACC > SRR4302533.1269570/1‑94 (MQ=60)
CAGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCT > SRR4302533.5919439/1‑94 (MQ=60)
AGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTA > SRR4302533.6146679/1‑94 (MQ=60)
AGGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTA > SRR4302533.28238/1‑94 (MQ=60)
GGGAACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCCCCAGCATGGAACCTAC > SRR4302533.2771152/1‑94 (MQ=60)
GGAACCCATACCACGGTAAGACTTGTAAGAACGTCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACC > SRR4302533.4311699/1‑94 (MQ=60)
aacccatcagACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTAGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT < SRR4302533.3908149/84‑1 (MQ=60)
AACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT < SRR4302533.5128144/94‑1 (MQ=60)
AACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT < SRR4302533.5165439/94‑1 (MQ=60)
AACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT < SRR4302533.1836782/94‑1 (MQ=60)
AACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCAT < SRR4302533.102685/94‑1 (MQ=60)
ACCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATC < SRR4302533.308528/94‑1 (MQ=60)
CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA > SRR4302533.5475960/1‑94 (MQ=60)
CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA < SRR4302533.5208178/94‑1 (MQ=60)
CCCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCA > SRR4302533.4268008/1‑94 (MQ=60)
CCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAC > SRR4302533.1410760/1‑94 (MQ=60)
CCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAC > SRR4302533.2243058/1‑94 (MQ=60)
CCATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCAC > SRR4302533.5654465/1‑94 (MQ=60)
CATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACC > SRR4302533.5470833/1‑94 (MQ=60)
ATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCG < SRR4302533.2746010/94‑1 (MQ=60)
ATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCG > SRR4302533.3987460/1‑94 (MQ=60)
ATACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCG > SRR4302533.4530758/1‑94 (MQ=60)
TACCACGGTAAGACTTGTAAGACCGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGC < SRR4302533.176878/94‑1 (MQ=60)
TACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGC > SRR4302533.4608405/1‑94 (MQ=60)
TACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGC > SRR4302533.6149151/1‑94 (MQ=60)
TACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGC > SRR4302533.1463264/1‑94 (MQ=60)
TACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCAGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGC < SRR4302533.535840/94‑1 (MQ=60)
ACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCG > SRR4302533.4181766/1‑94 (MQ=60)
ACCACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCG < SRR4302533.3175703/94‑1 (MQ=60)
ACCACGGTAAGACTTGTAAGAACGGCCCTGGCAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGCACCTACCATCACCGCG > SRR4302533.2188100/1‑94 (MQ=60)
CACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCT > SRR4302533.5192617/1‑94 (MQ=60)
ACGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTT < SRR4302533.6079474/94‑1 (MQ=60)
CGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTG < SRR4302533.2884679/94‑1 (MQ=60)
CGGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTG > SRR4302533.5087938/1‑94 (MQ=60)
GGTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGC < SRR4302533.2273117/94‑1 (MQ=60)
GTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCG > SRR4302533.2880488/1‑94 (MQ=60)
GTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCG < SRR4302533.5288291/94‑1 (MQ=60)
GTAAGACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCG > SRR4302533.3716966/1‑94 (MQ=60)
GACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAG < SRR4302533.612791/94‑1 (MQ=60)
GACTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAG < SRR4302533.2106670/94‑1 (MQ=60)
ACTTGTAAGAACGGCCCTGCTAGAGTTCGATTTCACCCGGAGATTCTTCAGTGCCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGC < SRR4302533.3860306/94‑1 (MQ=60)
CTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG > SRR4302533.4750094/1‑94 (MQ=60)
|
GGCACCAGTTTGTCGGCAGCGTTATCGCTCTGGAAATAACGGTCAGAGGAACCTTTGGACATCGCGCCCAGGGAACCCATACCACGGTAAGATTTGTAAGAACGGCCCTGGTAGAGTTCGATTTCACCCGGAGATTCTTCAGTACCCGCCAGCATGGAACCTACCATCACCGCGCTTGCGCCAGCG > NC_000913/2630850‑2631035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
