Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,754,691	T→C	V171A (GTT→GCT)	intA →	prophage CP4‑57 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,754,691	0	T	C	99.7%	1193.0 / ‑5.1	371	V171A (GTT→GCT)	intA	prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (197/172); total (197/174)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01

Only 100 of 380 total aligned reads displayed.

CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAA  >  NC_000913/2754601‑2754780

cAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTc                                                                                         <  1:5949860/93‑1 (MQ=255)

  aTCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgc                                                                                       <  2:7733018/93‑1 (MQ=255)

  aTCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgc                                                                                       <  2:179719/93‑1 (MQ=255)

   tCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgcc                                                                                      >  1:5390329/1‑93 (MQ=255)

   tCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgcc                                                                                      <  1:4703358/93‑1 (MQ=255)

     ggTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcggcgc                                                                                    >  1:2595786/1‑93 (MQ=255)

     ggTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgccgc                                                                                    >  2:4460225/1‑93 (MQ=255)

      gTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCgccgcc                                                                                   >  1:6782129/1‑93 (MQ=255)

      gTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCgccgcc                                                                                   >  2:6049934/1‑93 (MQ=255)

        gATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCtt                                                                                 <  1:1776761/93‑1 (MQ=255)

         atatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCttt                                                                                <  1:7298284/93‑1 (MQ=255)

         atatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCttt                                                                                <  2:4035423/93‑1 (MQ=255)

           atCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGt                                                                              <  2:6600442/93‑1 (MQ=255)

            tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAGAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGATCGCCGCCTTTGTc                                                                             >  2:3465642/1‑93 (MQ=255)

            tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                             >  1:6139912/1‑93 (MQ=255)

            tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                             <  2:9219850/93‑1 (MQ=255)

            acAGTATCGCTGATATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                             <  2:7498634/92‑1 (MQ=255)

             cAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCa                                                                            >  2:5514008/1‑93 (MQ=255)

              aGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAg                                                                           <  2:9580667/93‑1 (MQ=255)

               gTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGc                                                                          >  1:9274108/1‑93 (MQ=255)

               gTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGc                                                                          <  2:2068644/93‑1 (MQ=255)

                tATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCg                                                                         >  1:2884067/1‑93 (MQ=255)

                tATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGACAGAGGAGCATTAGAGACTGCTCGCCGCCTTTGTCAGCg                                                                         >  2:7216490/1‑93 (MQ=255)

                  tCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTa                                                                       >  2:1494117/1‑93 (MQ=255)

                     cTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTa                                                                    >  1:6436915/1‑93 (MQ=255)

                      tGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCTGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTaa                                                                   <  1:3712991/93‑1 (MQ=255)

                      tGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTaa                                                                   >  1:4930372/1‑93 (MQ=255)

                       gagaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAAc                                                                  <  1:5467003/93‑1 (MQ=255)

                       gagaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAAc                                                                  <  2:1020287/93‑1 (MQ=255)

                          aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                               >  1:9807080/1‑93 (MQ=255)

                            tAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGt                                                             >  1:3275663/1‑93 (MQ=255)

                            tAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGt                                                             >  2:8388134/1‑93 (MQ=255)

                              aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                           <  1:7602105/93‑1 (MQ=255)

                                  tCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAt                                                       <  1:9681343/93‑1 (MQ=255)

                                  tCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAt                                                       <  2:2821851/93‑1 (MQ=255)

                                  tCATACTCTGGTTAAAGCACTTCAGCCGGATCAGGCCACAGGCGCATTAGAGACTGCTCGCCGACTTTGTCAGCGTATTAATCAAGCCATgct                                                       >  2:4260525/1‑91 (MQ=255)

                                   cATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAtt                                                      >  1:5773049/1‑93 (MQ=255)

                                   cATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAtt                                                      <  2:5199227/93‑1 (MQ=255)

                                    aTACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAttt                                                     <  2:3862933/93‑1 (MQ=255)

                                    aTACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAttt                                                     >  2:3194170/1‑93 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  1:6251431/93‑1 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    >  1:5700774/1‑93 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    >  1:10009748/1‑93 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  2:9321893/93‑1 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    >  1:3766761/1‑93 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTAAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  1:9490348/93‑1 (MQ=255)

                                       ctctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTCTg                                                  >  2:885799/1‑93 (MQ=255)

                                       ctctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATg                                                  <  1:8247664/93‑1 (MQ=255)

                                        tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgc                                                 <  1:8824530/93‑1 (MQ=255)

                                           ggTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCa                                              <  2:4611979/93‑1 (MQ=255)

                                            gTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAg                                             >  2:1102369/1‑93 (MQ=255)

                                              tAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGaa                                           <  1:3663503/93‑1 (MQ=255)

                                               aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                          >  1:8494370/1‑93 (MQ=255)

                                               aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGAAGAac                                          >  1:2244288/1‑93 (MQ=255)

                                                aaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAaca                                         <  2:2477452/93‑1 (MQ=255)

                                                 aGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAacac                                        <  1:5023101/93‑1 (MQ=255)

                                                 aGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAacac                                        >  1:5305437/1‑93 (MQ=255)

                                                  gCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAcaca                                       <  1:5214870/93‑1 (MQ=255)

                                                     gTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGc                                    <  1:6906220/93‑1 (MQ=255)

                                                      ttCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGcc                                   <  1:8967793/93‑1 (MQ=255)

                                                       tCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCt                                  <  1:5627884/93‑1 (MQ=255)

                                                       tCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCt                                  <  2:2223308/93‑1 (MQ=255)

                                                       tCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCt                                  <  2:3348116/93‑1 (MQ=255)

                                                        cAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtg                                 >  1:3544806/1‑93 (MQ=255)

                                                          gCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgat                               <  1:7743826/93‑1 (MQ=255)

                                                           ccGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgatt                              <  1:4749055/93‑1 (MQ=255)

                                                           ccGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgatt                              >  1:9936147/1‑93 (MQ=255)

                                                            cGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAATGAAGTCATGATTTATGCGCAGAACACAGGCCtgattg                             <  2:8586977/93‑1 (MQ=255)

                                                            cGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattg                             >  2:5918133/1‑93 (MQ=255)

                                                            cGGTTCAGGCAAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattg                             <  1:2916375/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                            <  1:1173804/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                            <  2:3660880/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                            <  1:7915211/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                            <  2:1267819/93‑1 (MQ=255)

                                                                ttacgCCAGAGGCGCATTAAACACTGCTCGCCGCCTTTGTCAGCGTATTAACGACGTCATTATTTAGGCGCAGAACACAGGCCTGATTGATGc                         >  2:7009400/5‑93 (MQ=255)

                                                                 cAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCt                        <  1:2429469/93‑1 (MQ=255)

                                                                 cAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCt                        <  1:907894/93‑1 (MQ=255)

                                                                  aGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTg                       >  2:6919622/1‑93 (MQ=255)

                                                                   ggCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGt                      <  1:3970353/93‑1 (MQ=255)

                                                                     ccAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTc                    >  1:2008157/1‑93 (MQ=255)

                                                                      cAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTcc                   >  2:2964235/1‑93 (MQ=255)

                                                                        gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCGGCGTATTAACGAAGCCATGATTTATGCGCAGAAAACAGGCCTGATTGATGCTCTGCCtg                 >  2:560845/1‑92 (MQ=255)

                                                                        gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                 >  2:9762101/1‑93 (MQ=255)

                                                                        gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                 >  1:7121897/1‑93 (MQ=255)

                                                                         agGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAg                <  2:1639980/93‑1 (MQ=255)

                                                                         agGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAg                >  1:315470/1‑93 (MQ=255)

                                                                             gCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTa            >  1:4253620/1‑93 (MQ=255)

                                                                             gCAATAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAGGTATGCGCAGAACACAGGCCTGAGTGATGCTGGTCCGAGTGTa            >  2:8969359/1‑93 (MQ=255)

                                                                               aTTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTaaa          <  2:9850646/93‑1 (MQ=255)

                                                                                ttAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAat         >  2:8216557/1‑93 (MQ=255)

                                                                                ttAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAat         >  2:4888039/1‑93 (MQ=255)

                                                                                ttAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAat         >  1:1559483/1‑93 (MQ=255)

                                                                                 tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata        <  2:5360168/93‑1 (MQ=255)

                                                                                 tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata        <  2:5762326/93‑1 (MQ=255)

                                                                                   gagaCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATc      <  2:194609/93‑1 (MQ=255)

                                                                                    agaCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCg     >  1:3025442/1‑93 (MQ=255)

                                                                                     gaCTGCTCGCAGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGAGCAGAACACAGGCCTGATTGATGCTGTTACTAGTGTAAATATCgg    >  2:8507749/1‑93 (MQ=255)

                                                                                      aCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGa   >  1:1665581/1‑93 (MQ=255)

                                                                                       cTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGaa  >  2:648501/1‑93 (MQ=255)

                                                                                       cTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGaa  <  2:5829676/93‑1 (MQ=255)

CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAA  >  NC_000913/2754601‑2754780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 206 total aligned reads displayed.

GGCAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  NC_000913/2754599‑2754784

CGCAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCT                                                                                              <  SRR4302540.6717474/94‑1 (MQ=60)

  CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCG                                                                                            >  SRR4302540.9169928/1‑94 (MQ=60)

  CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCG                                                                                            <  SRR4302540.6015660/94‑1 (MQ=60)

   AATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGC                                                                                           >  SRR4302540.6379011/1‑94 (MQ=60)

    ATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCC                                                                                          >  SRR4302540.4954254/1‑94 (MQ=60)

    ATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCC                                                                                          >  SRR4302540.5449608/1‑94 (MQ=60)

    ATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCC                                                                                          >  SRR4302540.4954253/1‑94 (MQ=60)

     TCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCG                                                                                         <  SRR4302540.4753620/94‑1 (MQ=60)

     TCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCG                                                                                         >  SRR4302540.4780713/1‑94 (MQ=60)

     TCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCG                                                                                         >  SRR4302540.6379713/1‑94 (MQ=60)

      CGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGGCGC                                                                                        >  SRR4302540.2623780/1‑94 (MQ=60)

       GGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCC                                                                                       >  SRR4302540.3516448/1‑94 (MQ=60)

       GGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCC                                                                                       >  SRR4302540.6857124/1‑94 (MQ=60)

       GGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCC                                                                                       >  SRR4302540.2989035/1‑94 (MQ=60)

        GTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCT                                                                                      >  SRR4302540.3163875/1‑94 (MQ=60)

        GTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCT                                                                                      >  SRR4302540.328447/1‑94 (MQ=60)

         TGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTT                                                                                     <  SRR4302540.9836699/94‑1 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    >  SRR4302540.5351664/1‑94 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    <  SRR4302540.5666197/94‑1 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    >  SRR4302540.5431482/1‑94 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    >  SRR4302540.5431481/1‑94 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    <  SRR4302540.7249315/94‑1 (MQ=60)

          GATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTT                                                                                    <  SRR4302540.1796053/94‑1 (MQ=60)

           ATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTG                                                                                   <  SRR4302540.7379739/94‑1 (MQ=60)

           ATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTG                                                                                   >  SRR4302540.2274114/1‑94 (MQ=60)

           ATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTG                                                                                   <  SRR4302540.1665386/94‑1 (MQ=60)

            TATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGT                                                                                  <  SRR4302540.8625593/94‑1 (MQ=60)

            TATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGT                                                                                  <  SRR4302540.8625594/94‑1 (MQ=60)

             ATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTC                                                                                 >  SRR4302540.9596994/1‑94 (MQ=60)

             ATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTC                                                                                 >  SRR4302540.6208293/1‑94 (MQ=60)

              TCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCA                                                                                <  SRR4302540.1757999/94‑1 (MQ=60)

              TCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCA                                                                                <  SRR4302540.1612178/94‑1 (MQ=60)

                AGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGC                                                                              >  SRR4302540.9384991/1‑94 (MQ=60)

                AGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCA‑TAGAGACTGCTCGCCGCCTTTGTCAGCG                                                                             >  SRR4302540.6571133/1‑94 (MQ=60)

                 GTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCG                                                                             >  SRR4302540.7086005/1‑94 (MQ=60)

                 GTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCG                                                                             >  SRR4302540.2915455/1‑94 (MQ=60)

                  TATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGT                                                                            >  SRR4302540.8575969/1‑94 (MQ=60)

                  TATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGT                                                                            >  SRR4302540.1765698/1‑94 (MQ=60)

                    TCACTTAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAT                                                                          <  SRR4302540.9515203/94‑1 (MQ=60)

                    TCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAT                                                                          <  SRR4302540.2314722/94‑1 (MQ=60)

                     CACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATT                                                                         >  SRR4302540.1562834/1‑94 (MQ=60)

                      ACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTA                                                                        >  SRR4302540.5089670/1‑94 (MQ=60)

                      ACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTA                                                                        >  SRR4302540.6508561/1‑94 (MQ=60)

                      ACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTA                                                                        <  SRR4302540.5466597/94‑1 (MQ=60)

                      ACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTA                                                                        >  SRR4302540.4220135/1‑94 (MQ=60)

                      ACTGAGATTAAGGCTAGAACTCAGGTTAAAGCAGTTCAGCCGGTTAAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTA                                                                        <  SRR4302540.9096416/94‑1 (MQ=60)

                       CTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAA                                                                       >  SRR4302540.2921584/1‑94 (MQ=60)

                       CTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAA                                                                       >  SRR4302540.5867422/1‑94 (MQ=60)

                       CTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAA                                                                       >  SRR4302540.4983518/1‑94 (MQ=60)

                       CTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAA                                                                       >  SRR4302540.9656696/1‑94 (MQ=60)

                        TGAGATTAAGGCTCATACTCTGGTTAAGGCAGTTCAGCCGGTTAAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAAC                                                                      >  SRR4302540.2914633/1‑94 (MQ=60)

                        TGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCTGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAAC                                                                      <  SRR4302540.3753510/94‑1 (MQ=60)

                         GAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACG                                                                     <  SRR4302540.5527180/94‑1 (MQ=60)

                         GAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACG                                                                     <  SRR4302540.1768236/94‑1 (MQ=60)

                         GAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACG                                                                     <  SRR4302540.10018491/94‑1 (MQ=60)

                         GAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACG                                                                     >  SRR4302540.3982232/1‑94 (MQ=60)

                          AGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGA                                                                    >  SRR4302540.3079105/1‑94 (MQ=60)

                          AGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGA                                                                    >  SRR4302540.9848082/1‑94 (MQ=60)

                          AGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGA                                                                    <  SRR4302540.4522463/94‑1 (MQ=60)

                           GATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAA                                                                   >  SRR4302540.9921871/1‑94 (MQ=60)

                             TTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGT                                                                 >  SRR4302540.7936202/1‑94 (MQ=60)

                             TTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGT                                                                 <  SRR4302540.7026364/94‑1 (MQ=60)

                             TTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGT                                                                 >  SRR4302540.3311433/1‑94 (MQ=60)

                             TTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGT                                                                 <  SRR4302540.6214358/94‑1 (MQ=60)

                              TAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTC                                                                <  SRR4302540.8062481/94‑1 (MQ=60)

                               AAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCA                                                               >  SRR4302540.10086369/1‑94 (MQ=60)

                               AAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCA                                                               >  SRR4302540.4402631/1‑94 (MQ=60)

                               AAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCA                                                               >  SRR4302540.4020620/1‑94 (MQ=60)

                               AAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCA                                                               <  SRR4302540.9249092/94‑1 (MQ=60)

                                AGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCAT                                                              <  SRR4302540.7687517/94‑1 (MQ=60)

                                    TCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATT                                                          <  SRR4302540.5679927/94‑1 (MQ=60)

                                    TCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATT                                                          <  SRR4302540.9795250/94‑1 (MQ=60)

                                    TCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATT                                                          >  SRR4302540.5836820/1‑94 (MQ=60)

                                    TCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATT                                                          >  SRR4302540.5836819/1‑94 (MQ=60)

                                     CATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTT                                                         >  SRR4302540.8503173/1‑94 (MQ=60)

                                     CATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTT                                                         >  SRR4302540.764646/1‑94 (MQ=60)

                                     CATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGGCATGATTT                                                         >  SRR4302540.2229594/1‑94 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        <  SRR4302540.1944127/94‑1 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        >  SRR4302540.5763536/1‑94 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        >  SRR4302540.549137/1‑94 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        >  SRR4302540.486837/1‑94 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        >  SRR4302540.632331/1‑94 (MQ=60)

                                      ATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTA                                                        >  SRR4302540.10126306/1‑94 (MQ=60)

                                       TGCTCCGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAT                                                       <  SRR4302540.5820365/94‑1 (MQ=60)

                                       TACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAT                                                       <  SRR4302540.5820364/94‑1 (MQ=60)

                                       TACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAT                                                       <  SRR4302540.6320987/94‑1 (MQ=60)

                                       TACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAT                                                       <  SRR4302540.6320975/94‑1 (MQ=60)

                                       TACTCTGGTTAAAGCAGTTAAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAT                                                       <  SRR4302540.9602852/94‑1 (MQ=60)

                                         CTCTGGTTAAAGCAGTTGAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGC                                                     <  SRR4302540.1563380/94‑1 (MQ=60)

                                         CTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGC                                                     >  SRR4302540.8935492/1‑94 (MQ=60)

                                         CTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGC                                                     >  SRR4302540.6053441/1‑94 (MQ=60)

                                         CTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGC                                                     >  SRR4302540.2401346/1‑94 (MQ=60)

                                         CTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGC                                                     <  SRR4302540.8343531/94‑1 (MQ=60)

                                          TCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCCGCGTATTAACGAAGTCATGATTTATGCG                                                    >  SRR4302540.7186456/1‑94 (MQ=60)

                                          TCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCG                                                    <  SRR4302540.8926576/94‑1 (MQ=60)

                                          TCGGGTGAAAGCAGTGCAGCCGGTGCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCG                                                    <  SRR4302540.8926577/94‑1 (MQ=60)

                                            TGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCA                                                  <  SRR4302540.5559242/94‑1 (MQ=60)

                                            TGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCA                                                  >  SRR4302540.3685615/1‑94 (MQ=60)

                                             GGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAG                                                 <  SRR4302540.4756911/94‑1 (MQ=60)

                                             GGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAG                                                 <  SRR4302540.2669317/94‑1 (MQ=60)

                                               TTAAGGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAA                                               >  SRR4302540.7754508/1‑94 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAC                                              <  SRR4302540.3703598/94‑1 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAC                                              >  SRR4302540.10089178/1‑94 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAC                                              >  SRR4302540.3553252/1‑94 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAC                                              <  SRR4302540.3254843/94‑1 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAC                                              >  SRR4302540.8593074/1‑94 (MQ=60)

                                                TAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGAAGAAC                                              >  SRR4302540.2268407/1‑94 (MQ=60)

                                                  AAGGAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACAC                                            <  SRR4302540.621852/94‑1 (MQ=60)

                                                  AAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACAC                                            <  SRR4302540.545121/94‑1 (MQ=60)

                                                  AAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACAC                                            >  SRR4302540.5363491/1‑94 (MQ=60)

                                                  AAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACAC                                            <  SRR4302540.8054250/94‑1 (MQ=60)

                                                   AGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACA                                           <  SRR4302540.5077474/94‑1 (MQ=60)

                                                   AGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACA                                           <  SRR4302540.9314560/94‑1 (MQ=60)

                                                   AGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACA                                           >  SRR4302540.3982469/1‑94 (MQ=60)

                                                    GCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAG                                          <  SRR4302540.5271702/94‑1 (MQ=60)

                                                    GCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAG                                          <  SRR4302540.7425324/94‑1 (MQ=60)

                                                    GCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAG                                          <  SRR4302540.1185958/94‑1 (MQ=60)

                                                    GCAGTGCAGCCGGTTCAGTCCAGAGGTGCATTAGAGACTGCTCGCCGCCTGTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAG                                          <  SRR4302540.5017141/94‑1 (MQ=60)

                                                      AGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGC                                        <  SRR4302540.1824609/94‑1 (MQ=60)

                                                       GTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCC                                       >  SRR4302540.5002407/1‑94 (MQ=60)

                                                       GTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCC                                       <  SRR4302540.6983015/94‑1 (MQ=60)

                                                       GTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCC                                       <  SRR4302540.4069795/94‑1 (MQ=60)

                                                       GTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCC                                       >  SRR4302540.7983184/1‑94 (MQ=60)

                                                        TTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCT                                      <  SRR4302540.3697655/94‑1 (MQ=60)

                                                        TTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCT                                      <  SRR4302540.9074135/94‑1 (MQ=60)

                                                         TCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTG                                     <  SRR4302540.5689827/94‑1 (MQ=60)

                                                         TCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTG                                     <  SRR4302540.6943369/94‑1 (MQ=60)

                                                         TCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTG                                     >  SRR4302540.3583522/1‑94 (MQ=60)

                                                         TCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTG                                     >  SRR4302540.3583521/1‑94 (MQ=60)

                                                            GCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATT                                  <  SRR4302540.7834242/94‑1 (MQ=60)

                                                            GCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATT                                  >  SRR4302540.10052097/1‑94 (MQ=60)

                                                             CCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTG                                 <  SRR4302540.9920490/94‑1 (MQ=60)

                                                             CCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTG                                 <  SRR4302540.4799735/94‑1 (MQ=60)

                                                              CGGTTCAGGCAAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGA                                <  SRR4302540.2948287/94‑1 (MQ=60)

                                                               GGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGAT                               >  SRR4302540.3263087/1‑94 (MQ=60)

                                                               GGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGAT                               <  SRR4302540.1185943/94‑1 (MQ=60)

                                                               GGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGAT                               <  SRR4302540.8007487/94‑1 (MQ=60)

                                                                GTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATG                              >  SRR4302540.6003437/1‑94 (MQ=60)

                                                                  TCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCT                            >  SRR4302540.6027175/1‑94 (MQ=60)

                                                                  TCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCT                            <  SRR4302540.252730/94‑1 (MQ=60)

                                                                   CAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTG                           <  SRR4302540.2455641/94‑1 (MQ=60)

                                                                   CAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTG                           <  SRR4302540.917525/94‑1 (MQ=60)

                                                                   CAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTG                           <  SRR4302540.8048512/94‑1 (MQ=60)

                                                                    AGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGT                          <  SRR4302540.3785157/94‑1 (MQ=60)

                                                                    AGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGT                          <  SRR4302540.1184639/94‑1 (MQ=60)

                                                                    AGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGT                          >  SRR4302540.5729985/1‑94 (MQ=60)

                                                                    AGGCCAGAGGTGCATGAGAGACTGCTCGCCGCCTGTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGT                          <  SRR4302540.3785158/94‑1 (MQ=60)

                                                                    AGGCCAGAGGGGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGT                          <  SRR4302540.3785156/94‑1 (MQ=60)

                                                                     GGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTT                         <  SRR4302540.4013153/94‑1 (MQ=60)

                                                                     GGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTT                         <  SRR4302540.7814563/94‑1 (MQ=60)

                                                                      GCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTC                        >  SRR4302540.2871898/1‑94 (MQ=60)

                                                                      GCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTC                        <  SRR4302540.2919552/94‑1 (MQ=60)

                                                                      GCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTC                        >  SRR4302540.2029883/1‑94 (MQ=60)

                                                                       CCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCC                       >  SRR4302540.9284223/1‑94 (MQ=60)

                                                                       CCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCC                       >  SRR4302540.3688584/1‑94 (MQ=60)

                                                                        CAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTTATTGATGCTGTTCCT                      >  SRR4302540.7296242/1‑94 (MQ=60)

                                                                        CAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCT                      <  SRR4302540.861184/94‑1 (MQ=60)

                                                                        CAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCT                      <  SRR4302540.5153126/94‑1 (MQ=60)

                                                                        CAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCT                      >  SRR4302540.3742731/1‑94 (MQ=60)

                                                                        CAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCT                      >  SRR4302540.7580610/1‑94 (MQ=60)

                                                                         AGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTA                     >  SRR4302540.3151709/1‑94 (MQ=60)

                                                                         AGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTA                     >  SRR4302540.4986597/1‑94 (MQ=60)

                                                                         AGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTA                     >  SRR4302540.7201199/1‑94 (MQ=60)

                                                                          GAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAG                    <  SRR4302540.6926374/94‑1 (MQ=60)

                                                                          GAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAG                    <  SRR4302540.1581220/94‑1 (MQ=60)

                                                                          GAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAG                    >  SRR4302540.318611/1‑94 (MQ=60)

                                                                           AGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGT                   <  SRR4302540.5754631/94‑1 (MQ=60)

                                                                           AGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGT                   <  SRR4302540.5754630/94‑1 (MQ=60)

                                                                            GGTGCATTAGAGACTGCTCTCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTG                  <  SRR4302540.7774316/94‑1 (MQ=60)

                                                                            GGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTG                  <  SRR4302540.3725718/94‑1 (MQ=60)

                                                                            GGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTG                  <  SRR4302540.2977189/94‑1 (MQ=60)

                                                                            GGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTAATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTG                  >  SRR4302540.8927549/1‑94 (MQ=60)

                                                                              TGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTA                >  SRR4302540.3985791/1‑94 (MQ=60)

                                                                              TGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTA                >  SRR4302540.4299898/1‑94 (MQ=60)

                                                                                CATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAA              <  SRR4302540.2025053/94‑1 (MQ=60)

                                                                                CATTAGAGACTGATCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAA              <  SRR4302540.2487210/94‑1 (MQ=60)

                                                                                 ATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAAT             >  SRR4302540.1576614/1‑94 (MQ=60)

                                                                                 ATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAAT             <  SRR4302540.9697310/94‑1 (MQ=60)

                                                                                 ATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAAT             <  SRR4302540.5361836/94‑1 (MQ=60)

                                                                                  TTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACGCAGGCCTGATTGATGCTGTTCCTAGTGTAAATA            >  SRR4302540.6696213/1‑94 (MQ=60)

                                                                                  TTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATA            <  SRR4302540.6161481/94‑1 (MQ=60)

                                                                                  TTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATA            >  SRR4302540.5232488/1‑94 (MQ=60)

                                                                                    AGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATC          >  SRR4302540.2076669/1‑94 (MQ=60)

                                                                                    AGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATC          >  SRR4302540.4373162/1‑94 (MQ=60)

                                                                                    AGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATC          >  SRR4302540.9751534/1‑94 (MQ=60)

                                                                                    AGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATC          <  SRR4302540.1154697/94‑1 (MQ=60)

                                                                                     GAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCG         >  SRR4302540.3058675/1‑94 (MQ=60)

                                                                                     GAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCG         <  SRR4302540.7271912/94‑1 (MQ=60)

                                                                                       GACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGA       <  SRR4302540.9600891/94‑1 (MQ=60)

                                                                                       GACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGA       >  SRR4302540.1683709/1‑94 (MQ=60)

                                                                                         CTGCTCGCCGCCTTTGTCAGCGTATTTACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCCGTTCCTAGTGTAAATATCGGAAA     >  SRR4302540.7903307/1‑94 (MQ=60)

                                                                                         CTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAA     >  SRR4302540.7903306/1‑94 (MQ=60)

                                                                                          TGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAA    <  SRR4302540.6616183/94‑1 (MQ=60)

                                                                                           GCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAG   >  SRR4302540.4698133/1‑94 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCCGCGTATTAACGACGTCATGATTTATGCGCCGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  <  SRR4302540.9033965/94‑1 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  SRR4302540.8934709/1‑94 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  SRR4302540.9343860/1‑94 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  SRR4302540.2047460/1‑94 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  SRR4302540.5142285/1‑94 (MQ=60)

                                                                                            CTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGA  >  SRR4302540.4007732/1‑94 (MQ=60)

GGCAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAAAAGC  >  NC_000913/2754599‑2754784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`