Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,794,501	A→G	S103P (TCT→CCT)	ygaU ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,794,501	0	A	G	100.0%	988.4 / NA	302	S103P (TCT→CCT)	ygaU	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (166/136); total (166/136)

Only 100 of 307 total aligned reads displayed.

TTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGACTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCG  >  NC_000913/2794411‑2794590

ttAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCt                                                                                         >  2:9414001/1‑93 (MQ=255)

   gCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTaa                                                                                      >  2:3635985/1‑93 (MQ=255)

   gCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACCCAGAGTGTGGCCAGGCTTaa                                                                                      >  2:7802108/1‑93 (MQ=255)

    cATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCCCTCAGAGTGTCGCCAGGCTTAAc                                                                                     <  2:7640737/93‑1 (MQ=255)

       cGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGt                                                                                  <  2:9745957/93‑1 (MQ=255)

       cGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGt                                                                                  <  2:7949369/93‑1 (MQ=255)

        ggTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGta                                                                                 <  1:6134848/93‑1 (MQ=255)

         gTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGtat                                                                                <  1:5811802/93‑1 (MQ=255)

         gTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGtat                                                                                >  2:336901/1‑93 (MQ=255)

            tATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGACATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATaaa                                                                             >  2:6066720/1‑93 (MQ=255)

            tATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATaaa                                                                             >  1:5987697/1‑93 (MQ=255)

             aTTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATaaaa                                                                            <  1:6928056/93‑1 (MQ=255)

             aTTCGCTTCGAAGATTTTATGGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATaaaa                                                                            <  1:3513860/93‑1 (MQ=255)

              ttCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAAc                                                                           <  2:486311/93‑1 (MQ=255)

              ttCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAAc                                                                           <  1:1584549/93‑1 (MQ=255)

                 gCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAActgg                                                                        >  1:4128992/1‑93 (MQ=255)

                  cTTCGAAGATTTTATTGTACAGATTAGCATTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTACAGGTATAAAActggc                                                                       >  1:3475975/1‑93 (MQ=255)

                    tCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAActggctg                                                                     <  2:5769883/93‑1 (MQ=255)

                     cGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAActggctgg                                                                    <  1:4450397/93‑1 (MQ=255)

                     cGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAActggctgg                                                                    >  1:85055/1‑93 (MQ=255)

                       aaGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCa                                                                  <  2:9860954/93‑1 (MQ=255)

                       aaGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCa                                                                  >  2:5964259/1‑93 (MQ=255)

                        aGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAg                                                                 <  1:2381214/93‑1 (MQ=255)

                         gATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGt                                                                <  1:791044/93‑1 (MQ=255)

                         gATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGt                                                                >  1:6746007/1‑93 (MQ=255)

                         gATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGt                                                                <  1:2021325/93‑1 (MQ=255)

                          aTTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTg                                                               >  1:7345200/1‑93 (MQ=255)

                           ttttATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTgg                                                              >  1:307538/1‑93 (MQ=255)

                           ttttATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTgg                                                              <  1:2192877/93‑1 (MQ=255)

                            tttATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGc                                                             <  2:7886411/93‑1 (MQ=255)

                             ttATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCt                                                            <  1:8721019/93‑1 (MQ=255)

                               aTTGTACAGATTAGCGTGACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTgg                                                          <  2:5016119/93‑1 (MQ=255)

                                ttGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTggg                                                         >  1:3761318/1‑92 (MQ=255)

                                  gTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGgtgt                                                       >  2:2181029/1‑93 (MQ=255)

                                  gTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGgtgt                                                       >  2:8026518/1‑93 (MQ=255)

                                  gTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGgtgt                                                       >  2:4623655/1‑93 (MQ=255)

                                  gTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGgtgt                                                       <  1:8117356/93‑1 (MQ=255)

                                   tACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTc                                                      <  1:892772/93‑1 (MQ=255)

                                   tACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTc                                                      <  2:9654508/93‑1 (MQ=255)

                                   tACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGGGTc                                                      >  2:1159641/1‑93 (MQ=255)

                                   tACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGCAGCTGgggtg                                                      >  2:286343/1‑92 (MQ=255)

                                       gATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCg                                                  >  1:1380356/1‑93 (MQ=255)

                                       gATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCg                                                  <  1:3950307/93‑1 (MQ=255)

                                        aTTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCTCCGt                                                 >  1:3535059/1‑93 (MQ=255)

                                           aGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGtttt                                              <  1:5513622/93‑1 (MQ=255)

                                              gTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCAc                                           <  1:1890465/93‑1 (MQ=255)

                                              gTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCAc                                           >  1:9734764/1‑93 (MQ=255)

                                               ttACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCAcc                                          <  2:3767769/93‑1 (MQ=255)

                                                tACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCt                                         <  2:2054208/93‑1 (MQ=255)

                                                tACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGGCGCCGTTTTCAccc                                         >  2:4431423/1‑92 (MQ=255)

                                                 aCCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGGCGTTTTTACCTg                                        >  1:8611433/1‑93 (MQ=255)

                                                 aCCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTg                                        <  2:9085890/93‑1 (MQ=255)

                                                    gTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatc                                     <  2:7846280/93‑1 (MQ=255)

                                                    gTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatc                                     >  1:3282479/1‑93 (MQ=255)

                                                    gTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatc                                     <  2:7219477/93‑1 (MQ=255)

                                                    gTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCACCTGatc                                     >  2:5617985/1‑93 (MQ=255)

                                                    gTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGGCGCCGTTTTCACCTGatc                                     >  1:8063246/1‑93 (MQ=255)

                                                    gTAGACCTGTTTCGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatc                                     >  1:4998941/1‑93 (MQ=255)

                                                     tAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatca                                    <  2:5560353/93‑1 (MQ=255)

                                                     tAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatca                                    <  2:4787939/93‑1 (MQ=255)

                                                     tAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGatca                                    <  2:1675950/93‑1 (MQ=255)

                                                         ccTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGa                                >  1:10025472/1‑93 (MQ=255)

                                                          cTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGac                               <  1:2805616/93‑1 (MQ=255)

                                                           tGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGaca                              <  1:9467101/93‑1 (MQ=255)

                                                           tGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCACCTGATCATCGaca                              >  2:6235794/1‑93 (MQ=255)

                                                            gTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCCCCTGATCATCGacac                             >  2:2641144/1‑93 (MQ=255)

                                                             tttGGAAATGGCACTCAGAGTGTCGCAAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACt                            <  2:3859110/93‑1 (MQ=255)

                                                              ttGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTg                           <  2:7159877/93‑1 (MQ=255)

                                                              ttGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTg                           <  1:2505604/93‑1 (MQ=255)

                                                               tGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTgg                          <  2:8213144/93‑1 (MQ=255)

                                                                ggAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGc                         <  2:8696290/93‑1 (MQ=255)

                                                                 gAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCa                        <  1:4513661/93‑1 (MQ=255)

                                                                 gAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCa                        <  1:2267851/93‑1 (MQ=255)

                                                                 gAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCACCTGATCATCGACACTGGCa                        >  2:4328818/1‑93 (MQ=255)

                                                                  aaaTGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCaa                       >  1:1524778/1‑93 (MQ=255)

                                                                   aaTGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAAt                      <  1:2737120/93‑1 (MQ=255)

                                                                    aTGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATa                     <  1:4269187/93‑1 (MQ=255)

                                                                    aTGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCACCTGATCATCGACACTGGCAATa                     >  2:2514205/1‑93 (MQ=255)

                                                                     tGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATAc                    <  1:8773583/93‑1 (MQ=255)

                                                                          cTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGaa               >  1:5685695/1‑93 (MQ=255)

                                                                          cTCAGAGGGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCAGGTTTCACCTGATCATCCACACTGGCAATACCGaaa               >  2:2632432/1‑93 (MQ=255)

                                                                           tCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGaaa              <  2:2332056/93‑1 (MQ=255)

                                                                              gagTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAatat           <  2:6553949/93‑1 (MQ=255)

                                                                              gagTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAatat           <  1:7147161/93‑1 (MQ=255)

                                                                              gagTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAatat           <  2:1086747/93‑1 (MQ=255)

                                                                               agTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATAtt          <  2:1443604/93‑1 (MQ=255)

                                                                                gtgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTc         >  1:5247749/1‑93 (MQ=255)

                                                                                gtgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTc         >  1:4428659/1‑93 (MQ=255)

                                                                                gtgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTc         >  2:5467264/1‑93 (MQ=255)

                                                                                gtgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTc         <  2:3694755/93‑1 (MQ=255)

                                                                                 tgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTcc        >  1:918278/1‑93 (MQ=255)

                                                                                 tgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTcc        >  1:493458/1‑93 (MQ=255)

                                                                                 tgtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTcc        <  1:7989874/93‑1 (MQ=255)

                                                                                  gtCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCCTCGACACTGGCAATACCGGAAATATTccc       >  2:5287965/1‑93 (MQ=255)

                                                                                   tCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTcccc      >  2:651534/1‑93 (MQ=255)

                                                                                   tCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATAACGGAAATATTcccc      >  1:6298560/1‑93 (MQ=255)

                                                                                    cGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCa     <  2:930508/93‑1 (MQ=255)

                                                                                     gCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCAc    >  1:5316749/1‑93 (MQ=255)

                                                                                     gCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCAc    >  2:3316545/1‑93 (MQ=255)

                                                                                       cAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCg  >  1:4664728/1‑93 (MQ=255)

TTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGACTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCG  >  NC_000913/2794411‑2794590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGACTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCAA  >  NC_000913/2794408‑2794593

TTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGG                                                                                              >  SRR4302540.4888483/1‑94 (MQ=60)

TTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGG                                                                                              <  SRR4302540.4268986/94‑1 (MQ=60)

TTTTTAGCATCGGTTTATTAGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGG                                                                                              <  SRR4302540.361570/94‑1 (MQ=60)

 TTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGC                                                                                             >  SRR4302540.693132/1‑94 (MQ=60)

 TTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGC                                                                                             >  SRR4302540.1052202/1‑94 (MQ=60)

 TTGTAGCATCGGTTTATTCGCTTCGAAGATGTTATTGTACAGATTAGCGTTACCGTAGACCTGTTAGGATATGGCACTCAGAGTGTCGCCAGGC                                                                                             >  SRR4302540.9065979/1‑94 (MQ=60)

  TTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGCAGACCTGTGTGCAAATGGCACTCAGAGAGTCGCCAGGCT                                                                                            >  SRR4302540.535409/1‑94 (MQ=60)

    TAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTA                                                                                          <  SRR4302540.9653413/94‑1 (MQ=60)

     AGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAA                                                                                         >  SRR4302540.8852788/1‑94 (MQ=60)

      GCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAAC                                                                                        >  SRR4302540.4499209/1‑94 (MQ=60)

       CATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACG                                                                                       <  SRR4302540.3592343/94‑1 (MQ=60)

       CATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACG                                                                                       >  SRR4302540.2879376/1‑94 (MQ=60)

        ATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGG                                                                                      >  SRR4302540.5847556/1‑94 (MQ=60)

        ATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGG                                                                                      >  SRR4302540.6160969/1‑94 (MQ=60)

         TCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGT                                                                                     >  SRR4302540.7510471/1‑94 (MQ=60)

          CGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTA                                                                                    >  SRR4302540.3531216/1‑94 (MQ=60)

          CGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTA                                                                                    <  SRR4302540.5607890/94‑1 (MQ=60)

          CGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTA                                                                                    >  SRR4302540.6836928/1‑94 (MQ=60)

          CGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTA                                                                                    >  SRR4302540.45286/1‑94 (MQ=60)

           GGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTAT                                                                                   >  SRR4302540.7329209/1‑94 (MQ=60)

           GGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTAT                                                                                   <  SRR4302540.6203176/94‑1 (MQ=60)

           GGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTAT                                                                                   >  SRR4302540.2528415/1‑94 (MQ=60)

            GTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATA                                                                                  <  SRR4302540.4843764/94‑1 (MQ=60)

            GTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATA                                                                                  >  SRR4302540.1417936/1‑94 (MQ=60)

            GTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATA                                                                                  <  SRR4302540.5876035/94‑1 (MQ=60)

            GTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATA                                                                                  >  SRR4302540.2671856/1‑94 (MQ=60)

            GTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATA                                                                                  >  SRR4302540.1837856/1‑94 (MQ=60)

             TTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAA                                                                                 <  SRR4302540.3844023/94‑1 (MQ=60)

              TTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAA                                                                                >  SRR4302540.6054018/1‑94 (MQ=60)

                ATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAAC                                                                              <  SRR4302540.7005153/94‑1 (MQ=60)

                ATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAAC                                                                              <  SRR4302540.3552144/94‑1 (MQ=60)

                ATTCGCTTCGAAGATTTTATGGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAAC                                                                              <  SRR4302540.3552142/94‑1 (MQ=60)

                 TTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACT                                                                             <  SRR4302540.2345995/94‑1 (MQ=60)

                 TTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACT                                                                             <  SRR4302540.1601856/94‑1 (MQ=60)

                  TCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTG                                                                            <  SRR4302540.7156280/94‑1 (MQ=60)

                   CGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGG                                                                           >  SRR4302540.1371727/1‑94 (MQ=60)

                   CGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGG                                                                           >  SRR4302540.4178991/1‑94 (MQ=60)

                   CGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGG                                                                           >  SRR4302540.4173621/1‑94 (MQ=60)

                   CGCTTCGAAGATTTTATTGTACAGATTAGAGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGATTAACAGTATAAAACTGG                                                                           >  SRR4302540.1371726/1‑94 (MQ=60)

                    GCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGC                                                                          >  SRR4302540.3513826/1‑94 (MQ=60)

                    GCTTCGAAGATTTTATTGTACAGATTAGCATTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTACAGGTATAAAACTGGC                                                                          >  SRR4302540.3513824/1‑94 (MQ=60)

                     CTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGATCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCT                                                                         >  SRR4302540.4271130/1‑94 (MQ=60)

                     CTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCT                                                                         <  SRR4302540.6280061/94‑1 (MQ=60)

                     CTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCT                                                                         >  SRR4302540.4012477/1‑94 (MQ=60)

                     CTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCT                                                                         >  SRR4302540.2038275/1‑94 (MQ=60)

                      TTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTG                                                                        <  SRR4302540.4355402/94‑1 (MQ=60)

                      TTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTG                                                                        >  SRR4302540.588218/1‑94 (MQ=60)

                      TTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTG                                                                        >  SRR4302540.8295236/1‑94 (MQ=60)

                      TTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTG                                                                        >  SRR4302540.7424697/1‑94 (MQ=60)

                       TCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGG                                                                       <  SRR4302540.3762568/94‑1 (MQ=60)

                       TCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGG                                                                       <  SRR4302540.8290076/94‑1 (MQ=60)

                       TCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGG                                                                       >  SRR4302540.85955/1‑94 (MQ=60)

                        CGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGC                                                                      >  SRR4302540.531016/1‑94 (MQ=60)

                        CGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGC                                                                      >  SRR4302540.4053556/1‑94 (MQ=60)

                        CGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGC                                                                      >  SRR4302540.1529459/1‑94 (MQ=60)

                        CGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGC                                                                      <  SRR4302540.4498638/94‑1 (MQ=60)

                        CGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACGGGCTGGA                                                                      >  SRR4302540.3570491/1‑94 (MQ=60)

                         GAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCG                                                                     >  SRR4302540.2864861/1‑94 (MQ=60)

                         GAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCA                                                                     >  SRR4302540.5781090/1‑94 (MQ=60)

                          AAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAG                                                                    <  SRR4302540.6979235/94‑1 (MQ=60)

                          AAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAG                                                                    <  SRR4302540.9263716/94‑1 (MQ=60)

                           AGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGT                                                                   >  SRR4302540.6820548/1‑94 (MQ=60)

                           AGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGT                                                                   >  SRR4302540.8164753/1‑94 (MQ=60)

                           AGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGT                                                                   <  SRR4302540.2406867/94‑1 (MQ=60)

                           AGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGT                                                                   >  SRR4302540.9610187/1‑94 (MQ=60)

                           AGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGT                                                                   <  SRR4302540.8093375/94‑1 (MQ=60)

                            GATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTG                                                                  <  SRR4302540.2043178/94‑1 (MQ=60)

                            GATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTG                                                                  <  SRR4302540.799447/94‑1 (MQ=60)

                            GATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTG                                                                  >  SRR4302540.7427153/1‑94 (MQ=60)

                            GATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTG                                                                  <  SRR4302540.4686177/94‑1 (MQ=60)

                            GATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTG                                                                  <  SRR4302540.8033648/94‑1 (MQ=60)

                             ATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGG                                                                 <  SRR4302540.9331187/94‑1 (MQ=60)

                             ATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGG                                                                 >  SRR4302540.310595/1‑94 (MQ=60)

                              TTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGC                                                                <  SRR4302540.2216562/94‑1 (MQ=60)

                              TTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGC                                                                >  SRR4302540.5188922/1‑94 (MQ=60)

                              TTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGC                                                                >  SRR4302540.2495730/1‑94 (MQ=60)

                              TTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGC                                                                >  SRR4302540.6054190/1‑94 (MQ=60)

                               TTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCT                                                               >  SRR4302540.652714/1‑94 (MQ=60)

                               TTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCT                                                               >  SRR4302540.8642581/1‑94 (MQ=60)

                               TTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCT                                                               >  SRR4302540.8343133/1‑94 (MQ=60)

                                TTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTG                                                              <  SRR4302540.8822277/94‑1 (MQ=60)

                                TTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTG                                                              >  SRR4302540.2221536/1‑94 (MQ=60)

                                  ATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGT                                                            <  SRR4302540.6228538/94‑1 (MQ=60)

                                  ATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGG                                                            >  SRR4302540.2809776/1‑94 (MQ=60)

                                  ATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGG                                                            >  SRR4302540.3802355/1‑94 (MQ=60)

                                     GTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTC                                                         <  SRR4302540.8211554/94‑1 (MQ=60)

                                      TACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCG                                                        <  SRR4302540.902256/94‑1 (MQ=60)

                                         AGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCG                                                     >  SRR4302540.1395081/1‑94 (MQ=60)

                                          GATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCTCCGT                                                    >  SRR4302540.3573651/1‑94 (MQ=60)

                                          GATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGT                                                    <  SRR4302540.3992952/94‑1 (MQ=60)

                                              AGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTC                                                <  SRR4302540.5574349/94‑1 (MQ=60)

                                              AGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGGGTCGCCGTTTTC                                                >  SRR4302540.3141662/1‑94 (MQ=60)

                                                CGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTTAC                                              >  SRR4302540.3115679/1‑94 (MQ=60)

                                                CGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCAC                                              >  SRR4302540.209971/1‑94 (MQ=60)

                                                CGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCAC                                              >  SRR4302540.9849068/1‑94 (MQ=60)

                                                 GTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACC                                             <  SRR4302540.1911160/94‑1 (MQ=60)

                                                 GTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTTACC                                             >  SRR4302540.9889985/1‑94 (MQ=60)

                                                  TTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCT                                            <  SRR4302540.7144629/94‑1 (MQ=60)

                                                  TTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTTACCT                                            >  SRR4302540.2237936/1‑94 (MQ=60)

                                                   TACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGGCGTTTTTACCTG                                           >  SRR4302540.8711491/1‑94 (MQ=60)

                                                   TACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTTACCTG                                           >  SRR4302540.5378901/1‑94 (MQ=60)

                                                     CCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTtacccgac                                         >  SRR4302540.8097060/1‑86 (MQ=60)

                                                     CCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGAT                                         >  SRR4302540.3531403/1‑94 (MQ=60)

                                                     CCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGAT                                         >  SRR4302540.5378360/1‑94 (MQ=60)

                                                      CGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATC                                        >  SRR4302540.3318355/1‑94 (MQ=60)

                                                      CGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGGCGCCGTTTTCACCTGATC                                        >  SRR4302540.8156830/1‑94 (MQ=60)

                                                      CGTAGACCTGTTTCGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATC                                        >  SRR4302540.5053066/1‑94 (MQ=60)

                                                       GTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCA                                       >  SRR4302540.943102/1‑94 (MQ=60)

                                                         AGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATC                                     >  SRR4302540.4975285/1‑94 (MQ=60)

                                                         AGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATC                                     <  SRR4302540.5090758/94‑1 (MQ=60)

                                                         AGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGGCCCCGTTTTCACCTGAccctt                                     >  SRR4302540.7535807/1‑89 (MQ=60)

                                                          GACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGGTTTCACCTGATCATCG                                    >  SRR4302540.918828/1‑94 (MQ=60)

                                                           ACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGA                                   >  SRR4302540.10142126/1‑94 (MQ=60)

                                                            CCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGAC                                  <  SRR4302540.2797442/94‑1 (MQ=60)

                                                             CTGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACA                                 <  SRR4302540.2835916/94‑1 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACAC                                >  SRR4302540.3323679/1‑94 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACAC                                <  SRR4302540.9579407/94‑1 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACAC                                <  SRR4302540.1585658/94‑1 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACAC                                <  SRR4302540.8982906/94‑1 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATACTCGACAC                                >  SRR4302540.4433199/1‑94 (MQ=60)

                                                              TGTTTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGGGTCGCCGTTTTCACCTGATCATCGACAC                                >  SRR4302540.3323675/1‑94 (MQ=60)

                                                                 TTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGG                             <  SRR4302540.2532654/94‑1 (MQ=60)

                                                                 TTGGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGG                             >  SRR4302540.4711801/1‑94 (MQ=60)

                                                                   GGAAATGGCACTCAGAGTGTCGCCCGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCA                           >  SRR4302540.65707/1‑94 (MQ=60)

                                                                   GGAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCA                           <  SRR4302540.1550440/94‑1 (MQ=60)

                                                                   GGAAATGGCACTCAGAGTATCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGATGTCGCCGTTTTCACCTGATCATCGACACTGGCA                           <  SRR4302540.7783861/94‑1 (MQ=60)

                                                                    GAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAA                          <  SRR4302540.166935/94‑1 (MQ=60)

                                                                    GAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAA                          >  SRR4302540.1541661/1‑94 (MQ=60)

                                                                    GAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAA                          <  SRR4302540.2292181/94‑1 (MQ=60)

                                                                    GAAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAA                          <  SRR4302540.4562564/94‑1 (MQ=60)

                                                                     AAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAAT                         <  SRR4302540.4483144/94‑1 (MQ=60)

                                                                     AAATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAAA                         >  SRR4302540.8713832/1‑94 (MQ=60)

                                                                      AATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATA                        <  SRR4302540.2766665/94‑1 (MQ=60)

                                                                       ATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATAC                       >  SRR4302540.2193457/1‑94 (MQ=60)

                                                                       ATGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATAC                       <  SRR4302540.4315623/94‑1 (MQ=60)

                                                                        TGGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACC                      <  SRR4302540.8875228/94‑1 (MQ=60)

                                                                         GGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCG                     <  SRR4302540.8851365/94‑1 (MQ=60)

                                                                         GGCACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCG                     >  SRR4302540.8639874/1‑94 (MQ=60)

                                                                           CACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGGGTCGCCGGTTTCACCTGATCATCGACACTGGCAATACCGGA                   >  SRR4302540.448850/1‑94 (MQ=60)

                                                                            ACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAA                  >  SRR4302540.5748288/1‑94 (MQ=60)

                                                                            ACTCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGCTTTCACCTGATCATCGGCACTGGCAATACCGGAA                  >  SRR4302540.3812604/1‑94 (MQ=60)

                                                                              TCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAAT                <  SRR4302540.2399799/94‑1 (MQ=60)

                                                                              TCAGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAAT                >  SRR4302540.8986889/1‑94 (MQ=60)

                                                                                AGAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATAT              <  SRR4302540.2744745/94‑1 (MQ=60)

                                                                                 GAGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATT             <  SRR4302540.7226804/94‑1 (MQ=60)

                                                                                  AGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTC            >  SRR4302540.4476641/1‑94 (MQ=60)

                                                                                  AGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTC            >  SRR4302540.5304987/1‑94 (MQ=60)

                                                                                  AGTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTC            >  SRR4302540.5549185/1‑94 (MQ=60)

                                                                                   GTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCC           >  SRR4302540.927971/1‑94 (MQ=60)

                                                                                   GTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCC           >  SRR4302540.498748/1‑94 (MQ=60)

                                                                                   GTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCC           >  SRR4302540.498749/1‑94 (MQ=60)

                                                                                   GTGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCC           >  SRR4302540.573820/1‑94 (MQ=60)

                                                                                    TGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCC          <  SRR4302540.8082899/94‑1 (MQ=60)

                                                                                    TGTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCC          >  SRR4302540.8748381/1‑94 (MQ=60)

                                                                                     GTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCC         >  SRR4302540.5044849/1‑94 (MQ=60)

                                                                                     GTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCC         >  SRR4302540.6024662/1‑94 (MQ=60)

                                                                                     GTCGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATAACGGAAATATTCCCC         >  SRR4302540.6368701/1‑94 (MQ=60)

                                                                                       CGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCAC       >  SRR4302540.8028800/1‑94 (MQ=60)

                                                                                       CGCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCAC       >  SRR4302540.5374962/1‑94 (MQ=60)

                                                                                        GCCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACC      <  SRR4302540.195992/94‑1 (MQ=60)

                                                                                         CCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCG     <  SRR4302540.8202567/94‑1 (MQ=60)

                                                                                         CCAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCG     >  SRR4302540.4714665/1‑94 (MQ=60)

                                                                                          CAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGC    >  SRR4302540.723985/1‑94 (MQ=60)

                                                                                          CAGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGC    >  SRR4302540.6088681/1‑94 (MQ=60)

                                                                                           AGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCA   >  SRR4302540.4347267/1‑94 (MQ=60)

                                                                                           AGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCA   >  SRR4302540.6546760/1‑94 (MQ=60)

                                                                                           AGGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACAATGGCAATACCCGAAATATTCCCCCCCGCA   >  SRR4302540.6146327/1‑94 (MQ=60)

                                                                                            GGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCAA  >  SRR4302540.3792026/1‑94 (MQ=60)

                                                                                            GGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCAA  <  SRR4302540.1950821/94‑1 (MQ=60)

                                                                                            GGCTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCAA  >  SRR4302540.10112261/1‑94 (MQ=60)

TTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCACTCAGAGTGTCGCCAGACTTAACGGTATAAAACTGGCTGGCAGTGGCTGGTGTCGCCGTTTTCACCTGATCATCGACACTGGCAATACCGGAAATATTCCCCACCGCAA  >  NC_000913/2794408‑2794593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`