Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,796,091 |
A→G |
intergenic (+26/+21) |
ygaP → / ← stpA |
hypothetical protein/StpA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,796,091 | 0 | A | G | 100.0%
| 948.0
/ NA
| 296 | intergenic (+26/+21) | ygaP/stpA | hypothetical protein/StpA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (142/154); total (142/154) |
Only 100 of 317 total aligned reads displayed.
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC > NC_000913/2796001‑2796180
|
aTCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGa < 1:4143607/93‑1 (MQ=255)
aTCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGa > 2:22751/1‑93 (MQ=255)
aTCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGa > 2:1457273/1‑93 (MQ=255)
aTCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGa > 1:3074104/1‑93 (MQ=255)
tCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAc < 1:7416503/93‑1 (MQ=255)
tCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAc > 1:2764392/1‑93 (MQ=255)
aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt > 1:6196739/1‑93 (MQ=255)
aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt < 1:7046955/93‑1 (MQ=255)
aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt < 1:7310752/93‑1 (MQ=255)
gCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATc > 1:8391681/1‑93 (MQ=255)
gCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATc < 1:3658210/93‑1 (MQ=255)
cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATcc < 1:6987206/93‑1 (MQ=255)
gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGCAATCCgg > 2:2106352/1‑93 (MQ=255)
gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCgg < 1:4938063/93‑1 (MQ=255)
gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCgg > 2:1557863/1‑93 (MQ=255)
tttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc > 2:5933985/1‑93 (MQ=255)
tttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc < 2:6604761/93‑1 (MQ=255)
tttttGTGGAATGGCAAGGTTGTTAAATAAGATGCCGTGGAACCAACTAGCATGATAAGCGAGGCTCGACGAGCCCTACCGGCGACACCCGGc > 1:1440211/1‑93 (MQ=255)
ttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGcc < 2:6950401/93‑1 (MQ=255)
tttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCt > 2:1085735/1‑93 (MQ=255)
ttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTc < 2:9864620/93‑1 (MQ=255)
tgtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCa > 2:8274680/1‑93 (MQ=255)
gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTccg > 2:7256338/1‑91 (MQ=255)
gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAg > 2:2622690/1‑93 (MQ=255)
gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAAATCCGGCCTCAg > 2:5142806/1‑93 (MQ=255)
gAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTaa < 1:3377459/93‑1 (MQ=255)
gAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTaa < 2:1319240/93‑1 (MQ=255)
gAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTaa > 1:239714/1‑93 (MQ=255)
aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt < 2:6347664/93‑1 (MQ=255)
aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt < 1:5108379/93‑1 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa < 1:2814349/93‑1 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa > 2:4055813/1‑93 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa > 2:4599728/1‑93 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa < 2:7756673/93‑1 (MQ=255)
ggCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCCGCAATTAg > 2:715379/1‑93 (MQ=255)
ggCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAg < 2:9263335/93‑1 (MQ=255)
aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc > 2:4273565/1‑93 (MQ=255)
aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc < 1:7639143/93‑1 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa < 1:8307393/93‑1 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa > 2:3830560/1‑93 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa > 1:8451786/1‑93 (MQ=255)
gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa < 1:8670885/93‑1 (MQ=255)
gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa < 2:8772620/93‑1 (MQ=255)
gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa > 1:6093216/1‑93 (MQ=255)
ttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAt < 2:1876633/93‑1 (MQ=255)
ttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAt < 1:4369444/93‑1 (MQ=255)
gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgt < 1:1634568/93‑1 (MQ=255)
aTAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtc < 1:3832265/93‑1 (MQ=255)
tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtcg > 2:8374299/1‑93 (MQ=255)
aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga > 1:9700780/1‑93 (MQ=255)
aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga < 2:2673425/93‑1 (MQ=255)
aGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgag > 2:7571617/1‑93 (MQ=255)
gATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 2:9462387/1‑93 (MQ=255)
gATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga < 1:4203364/93‑1 (MQ=255)
tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga < 2:1685850/93‑1 (MQ=255)
ccGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAtt < 2:6662561/93‑1 (MQ=255)
gTGGAACCAACGAGCTTGAGAATCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCCGTCATTAGATCAGGAAATCGGCGAGAGATTTa > 1:2017653/1‑93 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa > 1:8902423/1‑93 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa > 1:3590597/1‑93 (MQ=255)
tGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAc < 1:9790087/93‑1 (MQ=255)
tGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAc > 2:1966240/1‑93 (MQ=255)
tGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAc < 2:4544526/93‑1 (MQ=255)
ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc < 2:3312084/93‑1 (MQ=255)
ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc > 2:5621646/1‑93 (MQ=255)
gAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCt < 1:1781784/93‑1 (MQ=255)
gAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCt > 2:4851326/1‑93 (MQ=255)
aaCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCtt > 2:8395047/1‑93 (MQ=255)
accaccGAGCTTGAGAAGCGACGCCGTACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc < 1:4483393/93‑1 (MQ=255)
aCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc < 1:5542421/93‑1 (MQ=255)
ccAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCt < 1:6616632/93‑1 (MQ=255)
cAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTg > 1:1263060/1‑93 (MQ=255)
aaCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGc > 2:8894071/1‑93 (MQ=255)
aaCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGc < 1:1516838/93‑1 (MQ=255)
aCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGcc > 2:3522612/1‑93 (MQ=255)
cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa < 1:1159535/93‑1 (MQ=255)
cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa < 1:6875202/93‑1 (MQ=255)
gAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAg < 1:10040244/93‑1 (MQ=255)
aGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAgc < 2:6363828/93‑1 (MQ=255)
ttGAGAAGCGCCGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGcc < 2:5715822/93‑1 (MQ=255)
ttGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGcc > 2:1193429/1‑93 (MQ=255)
ttGAGAAGCGAAGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGTCAGCGcc > 2:8014999/1‑93 (MQ=255)
gagaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg < 1:7920695/93‑1 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg < 2:583267/93‑1 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg < 1:2938244/93‑1 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg < 1:3754762/93‑1 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg > 1:7478654/1‑93 (MQ=255)
gCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCaa < 1:5804999/93‑1 (MQ=255)
aCGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTg > 1:2299431/1‑93 (MQ=255)
ccGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCt < 1:9076209/93‑1 (MQ=255)
ccGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCt < 2:4940598/93‑1 (MQ=255)
cGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt < 2:4097418/93‑1 (MQ=255)
cGGACGAGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt > 1:9841900/1‑93 (MQ=255)
gcgcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGgtg > 2:2762318/1‑93 (MQ=255)
gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa > 2:286095/1‑93 (MQ=255)
ccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACg > 1:904023/1‑93 (MQ=255)
cTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACgg > 2:2417064/1‑93 (MQ=255)
cTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACgg < 2:913502/93‑1 (MQ=255)
cTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACgg > 2:3006870/1‑93 (MQ=255)
tAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGc > 2:1748270/1‑93 (MQ=255)
tAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGc < 1:5373735/93‑1 (MQ=255)
|
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC > NC_000913/2796001‑2796180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGA > NC_000913/2795999‑2796184
|
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG > SRR4302540.6618472/1‑94 (MQ=60)
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG < SRR4302540.6004562/94‑1 (MQ=60)
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG > SRR4302540.5140558/1‑94 (MQ=60)
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG > SRR4302540.9860824/1‑94 (MQ=60)
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCG < SRR4302540.4238548/94‑1 (MQ=60)
AATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGA > SRR4302540.5625765/1‑94 (MQ=60)
AATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGA > SRR4302540.3107828/1‑94 (MQ=60)
ATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAC > SRR4302540.2794261/1‑94 (MQ=60)
ATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAC > SRR4302540.4198799/1‑94 (MQ=60)
ATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAC > SRR4302540.5097383/1‑94 (MQ=60)
ATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAC < SRR4302540.4188446/94‑1 (MQ=60)
TCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACA < SRR4302540.5572499/94‑1 (MQ=60)
TCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACA < SRR4302540.7499107/94‑1 (MQ=60)
CAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAT < SRR4302540.1302100/94‑1 (MQ=60)
CAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAT > SRR4302540.6265727/1‑94 (MQ=60)
AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATC > SRR4302540.8489066/1‑94 (MQ=60)
AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATC > SRR4302540.7095390/1‑94 (MQ=60)
AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATC < SRR4302540.7125322/94‑1 (MQ=60)
AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATC < SRR4302540.7392373/94‑1 (MQ=60)
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC < SRR4302540.3593834/94‑1 (MQ=60)
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC > SRR4302540.7549642/1‑94 (MQ=60)
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC < SRR4302540.3698265/94‑1 (MQ=60)
GCGGTTGTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC < SRR4302540.3681911/94‑1 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG < SRR4302540.2911948/94‑1 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG > SRR4302540.1616143/1‑94 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG < SRR4302540.7064780/94‑1 (MQ=60)
GGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGG < SRR4302540.559725/94‑1 (MQ=60)
GGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGG < SRR4302540.7696949/94‑1 (MQ=60)
GATTTTTGTGGAATGGCAATGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGG < SRR4302540.1058090/94‑1 (MQ=60)
GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGC < SRR4302540.4991346/94‑1 (MQ=60)
GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGC > SRR4302540.1455848/1‑94 (MQ=60)
GTTTTTGTGGAATGGCAAGGTTGTTAAATAAGATGCCGTGGAACCAACTAGCATGATAAGCGAGGCTCGACGAGCCCTACCGGCGACACCCGGC > SRR4302540.1455847/1‑94 (MQ=40)
ttttgggggactgtccaaGTTGTTAGATAAGATGGCGTGGAACCCACGAGGTTGAGAGGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCC < SRR4302540.6031412/76‑1 (MQ=60)
TTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCC < SRR4302540.6031411/94‑1 (MQ=60)
TTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTC < SRR4302540.6538178/94‑1 (MQ=60)
TGTGGAATGGCAAGGTTGTTAGATAAGATGCCGGGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAG < SRR4302540.2926205/94‑1 (MQ=60)
GTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGT < SRR4302540.8109972/94‑1 (MQ=60)
GGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAA > SRR4302540.242035/1‑94 (MQ=60)
GGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAA < SRR4302540.6232802/94‑1 (MQ=60)
GGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAA < SRR4302540.6232803/94‑1 (MQ=60)
GAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAT < SRR4302540.3414352/94‑1 (MQ=60)
GAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAT < SRR4302540.3414353/94‑1 (MQ=60)
AATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATT < SRR4302540.5163672/94‑1 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA > SRR4302540.2567516/1‑94 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA > SRR4302540.752100/1‑94 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA > SRR4302540.8493185/1‑94 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA > SRR4302540.5001613/1‑94 (MQ=60)
TGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAG < SRR4302540.2844750/94‑1 (MQ=60)
TGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAG < SRR4302540.2844749/94‑1 (MQ=60)
GGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGA > SRR4302540.3343324/1‑94 (MQ=60)
GGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACCAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGCCGACATCCGGCCTCAGTAATTAGA > SRR4302540.8313359/1‑94 (MQ=60)
GCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGAT < SRR4302540.3801728/94‑1 (MQ=60)
GCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGAT > SRR4302540.7034054/1‑94 (MQ=60)
GAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATC < SRR4302540.9849172/94‑1 (MQ=60)
CAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATC > SRR4302540.6555681/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA < SRR4302540.7725105/94‑1 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302540.9687875/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302540.8549910/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302540.9163264/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302540.91146/1‑94 (MQ=60)
AGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAG < SRR4302540.8403846/94‑1 (MQ=60)
GGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGTCCTCAGTAATTAGATCAGG < SRR4302540.1254429/94‑1 (MQ=60)
GTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGA > SRR4302540.7320419/1‑94 (MQ=60)
TGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAA > SRR4302540.6161038/1‑94 (MQ=60)
GTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAT < SRR4302540.8771601/94‑1 (MQ=60)
GTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAT > SRR4302540.2391293/1‑94 (MQ=60)
GTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAT < SRR4302540.1612521/94‑1 (MQ=60)
GTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAT < SRR4302540.6717301/94‑1 (MQ=60)
TTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATC < SRR4302540.5253377/94‑1 (MQ=60)
TTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATC < SRR4302540.4416916/94‑1 (MQ=60)
TAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCG < SRR4302540.2877811/94‑1 (MQ=60)
AGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGT > SRR4302540.3757669/1‑94 (MQ=60)
GATAAGATGCGGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTC < SRR4302540.25181/94‑1 (MQ=60)
GATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTC > SRR4302540.1815410/1‑94 (MQ=60)
GATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTC < SRR4302540.1652448/94‑1 (MQ=60)
ATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCG < SRR4302540.3873969/94‑1 (MQ=60)
ATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAGCCGGCCTCAGTAATTAGATCAGGAAATCGTCG < SRR4302540.3873968/94‑1 (MQ=60)
TAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGA > SRR4302540.9814829/1‑94 (MQ=60)
TAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGCAATTAGATCAGGAAATCGTCGC > SRR4302540.6135935/1‑94 (MQ=60)
AAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAG > SRR4302540.4574571/1‑94 (MQ=60)
AAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAG < SRR4302540.8781351/94‑1 (MQ=60)
GATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAG < SRR4302540.1036834/94‑1 (MQ=60)
GATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAG < SRR4302540.4249105/94‑1 (MQ=60)
GATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAG < SRR4302540.3774030/94‑1 (MQ=60)
ATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTGGATCAGGAAATCGTCGAGAGA < SRR4302540.9923062/94‑1 (MQ=60)
ATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGA < SRR4302540.571286/94‑1 (MQ=60)
TGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGCAATCGTCGAGAGAT > SRR4302540.448554/1‑94 (MQ=60)
GCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATT < SRR4302540.9817412/94‑1 (MQ=60)
CCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTT > SRR4302540.3850820/1‑94 (MQ=60)
CCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTT > SRR4302540.6063581/1‑94 (MQ=60)
CGTGGAACCAACGAGCTTGAGAATCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCCGTCATTAGATCAGGAAATCGGCGAGAGATTTA > SRR4302540.2039463/1‑94 (MQ=60)
CGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTA > SRR4302540.3629818/1‑94 (MQ=60)
CGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTA > SRR4302540.9005487/1‑94 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGATATCGTCGAGAGATTTAC > SRR4302540.9098293/1‑94 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAC < SRR4302540.8414245/94‑1 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAC < SRR4302540.8414244/94‑1 (MQ=60)
TGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACC < SRR4302540.9904776/94‑1 (MQ=60)
GGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCT < SRR4302540.8653189/94‑1 (MQ=60)
GAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTT < SRR4302540.1801138/94‑1 (MQ=60)
ACCACCGAGCTTGAGAAGCGACGCCGTACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302540.4532020/94‑1 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302540.4252815/94‑1 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT > SRR4302540.8758896/1‑94 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302540.5603473/94‑1 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302540.7417050/94‑1 (MQ=60)
CCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTG > SRR4302540.1276029/1‑94 (MQ=60)
CCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTG < SRR4302540.6689912/94‑1 (MQ=60)
CCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTG > SRR4302540.9908850/1‑94 (MQ=60)
AACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCC > SRR4302540.750421/1‑94 (MQ=60)
AACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCC < SRR4302540.1533614/94‑1 (MQ=60)
ACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTCCCA > SRR4302540.6876937/1‑94 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.1171590/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG > SRR4302540.4819033/1‑94 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.9742283/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.6951400/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.5124747/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.6574019/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.1703577/94‑1 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302540.2209119/94‑1 (MQ=60)
GAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGC < SRR4302540.10156987/94‑1 (MQ=60)
GAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGC > SRR4302540.10012928/1‑94 (MQ=60)
GCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGC > SRR4302540.4347555/1‑94 (MQ=60)
GCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGC < SRR4302540.800211/94‑1 (MQ=60)
CTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCC > SRR4302540.175728/1‑94 (MQ=60)
TTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCT < SRR4302540.4136116/94‑1 (MQ=60)
TTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCT < SRR4302540.5233/94‑1 (MQ=60)
TTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCACCT > SRR4302540.414827/1‑94 (MQ=60)
TGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTG < SRR4302540.2800253/94‑1 (MQ=60)
GAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGA > SRR4302540.7028084/1‑94 (MQ=60)
GAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGA < SRR4302540.8013011/94‑1 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG > SRR4302540.9917178/1‑94 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG > SRR4302540.7562119/1‑94 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG > SRR4302540.7562121/1‑94 (MQ=60)
GAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGC < SRR4302540.2970495/94‑1 (MQ=60)
GAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGC < SRR4302540.3795724/94‑1 (MQ=60)
AGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAA > SRR4302540.8942974/1‑94 (MQ=60)
GCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAT < SRR4302540.5869142/94‑1 (MQ=60)
CGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATT < SRR4302540.7725382/94‑1 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > SRR4302540.2324166/1‑94 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG < SRR4302540.2357120/94‑1 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > SRR4302540.166464/1‑94 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGGAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > SRR4302540.7178045/1‑94 (MQ=60)
CCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTT < SRR4302540.9185221/94‑1 (MQ=60)
CCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTT > SRR4302540.7103509/1‑94 (MQ=60)
CCGGACGAGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTT > SRR4302540.9956956/1‑94 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGTCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < SRR4302540.30973/94‑1 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < SRR4302540.7476887/94‑1 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC > SRR4302540.9182896/1‑94 (MQ=60)
GGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG < SRR4302540.3630159/94‑1 (MQ=60)
GGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG < SRR4302540.190257/94‑1 (MQ=60)
GGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > SRR4302540.2224251/1‑94 (MQ=60)
GGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > SRR4302540.4505817/1‑94 (MQ=60)
CGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTG < SRR4302540.1508647/94‑1 (MQ=60)
CGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTA < SRR4302540.1233407/94‑1 (MQ=60)
CGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTA > SRR4302540.8505219/1‑94 (MQ=60)
CGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTA < SRR4302540.8731198/94‑1 (MQ=60)
GCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTAC < SRR4302540.127918/94‑1 (MQ=60)
CCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACG > SRR4302540.913620/1‑94 (MQ=60)
CCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGG > SRR4302540.3225486/1‑94 (MQ=60)
CCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGG > SRR4302540.308169/1‑94 (MQ=60)
TAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC < SRR4302540.5432814/94‑1 (MQ=60)
AGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCC > SRR4302540.6418610/1‑94 (MQ=60)
GCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCT > SRR4302540.8348497/1‑94 (MQ=60)
GCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCT < SRR4302540.4017376/94‑1 (MQ=60)
GCGGCGACATCCGGCCTAAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCT < SRR4302540.7224441/94‑1 (MQ=60)
CGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTG < SRR4302540.1590772/94‑1 (MQ=60)
CGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACAGCCCTG < SRR4302540.1188277/94‑1 (MQ=60)
GGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGC > SRR4302540.7741034/1‑94 (MQ=60)
GGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGA < SRR4302540.4829815/94‑1 (MQ=60)
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AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGA > NC_000913/2795999‑2796184
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
