Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,796,091 |
A→G |
intergenic (+26/+21) |
ygaP → / ← stpA |
hypothetical protein/StpA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,796,091 | 0 | A | G | 100.0%
| 670.2
/ NA
| 209 | intergenic (+26/+21) | ygaP/stpA | hypothetical protein/StpA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/107); total (102/107) |
Only 100 of 220 total aligned reads displayed.
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC > NC_000913/2796001‑2796180
|
tCAGCGGTGTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAc > 2:6142383/1‑93 (MQ=255)
cAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACa > 2:864736/1‑93 (MQ=255)
cAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACa < 2:3606738/93‑1 (MQ=255)
aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt > 1:6219919/1‑93 (MQ=255)
aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt < 1:843531/93‑1 (MQ=255)
gCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATc < 1:52560/93‑1 (MQ=255)
cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATcc < 2:4531985/93‑1 (MQ=255)
cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGAGGCGTCAtac > 1:133130/1‑91 (MQ=255)
ggTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCg > 1:6268297/1‑93 (MQ=255)
gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCgg > 2:3556699/1‑93 (MQ=255)
tttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc < 1:514361/93‑1 (MQ=255)
ttgttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc < 1:4434666/90‑1 (MQ=255)
ttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTc < 2:677658/93‑1 (MQ=255)
ttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTc < 2:4413295/93‑1 (MQ=255)
gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAg > 2:1991005/1‑93 (MQ=255)
gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAg < 2:3867639/93‑1 (MQ=255)
tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGt < 1:1496004/93‑1 (MQ=255)
tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGt < 1:4461584/93‑1 (MQ=255)
ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTa < 1:4054938/93‑1 (MQ=255)
aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt < 2:3743155/93‑1 (MQ=255)
aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt > 1:3858233/1‑93 (MQ=255)
aTGGCAGGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt < 1:1112362/93‑1 (MQ=255)
aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt > 1:4883999/1‑93 (MQ=255)
aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt > 1:3842956/1‑93 (MQ=255)
aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGACGACATCCGGCCTCAGTAAtt < 2:2910677/93‑1 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa < 2:332704/93‑1 (MQ=255)
tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa > 1:135468/1‑93 (MQ=255)
tGGCAAGGGTGTTAGATAAGATGCCGTGGAAACAACGAGGTTGAGAAACGAAGCCCGACGGGCCCTAGCGGGGGCATCCGGGCTCTGTCATTa > 2:647508/1‑93 (MQ=255)
gCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGa < 2:4285230/93‑1 (MQ=255)
cAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGAt > 2:5196023/1‑93 (MQ=255)
aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc < 1:3748049/93‑1 (MQ=255)
aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc < 1:3435407/93‑1 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa < 1:5024202/93‑1 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa > 2:209749/1‑93 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa < 1:355823/93‑1 (MQ=255)
aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa > 1:4102297/1‑93 (MQ=255)
ttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGa < 1:1639758/93‑1 (MQ=255)
gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa > 1:1999278/1‑93 (MQ=255)
gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa < 1:1970674/93‑1 (MQ=255)
ttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAt > 2:5306151/1‑93 (MQ=255)
aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcg > 1:3274188/1‑93 (MQ=255)
aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcg > 2:1745915/1‑93 (MQ=255)
gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgt > 2:5996905/1‑93 (MQ=255)
aTAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtc > 1:2667838/1‑93 (MQ=255)
tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtcg > 1:1012203/1‑93 (MQ=255)
aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga < 1:1034425/93‑1 (MQ=255)
aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga < 1:2121243/93‑1 (MQ=255)
gATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 2:5854641/1‑93 (MQ=255)
aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagag > 2:2631282/1‑93 (MQ=255)
tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga < 1:948538/93‑1 (MQ=255)
tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga < 2:1011258/93‑1 (MQ=255)
gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAt < 2:4619610/93‑1 (MQ=255)
gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAt < 2:550487/93‑1 (MQ=255)
cGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAttt > 2:320462/1‑93 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGTCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa < 1:4224297/93‑1 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa < 1:2916958/93‑1 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa > 1:3954954/1‑93 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa < 2:2468346/93‑1 (MQ=255)
gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa < 1:1237212/93‑1 (MQ=255)
tGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAc < 2:1210669/93‑1 (MQ=255)
ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCTTAAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc < 2:6176514/93‑1 (MQ=255)
ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc > 1:1370267/1‑93 (MQ=255)
ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc > 2:1270087/1‑93 (MQ=255)
gAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCt < 2:4708693/93‑1 (MQ=255)
aaCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCtt < 1:2426500/93‑1 (MQ=255)
aaCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCtt < 2:487236/93‑1 (MQ=255)
aCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc > 2:175542/1‑93 (MQ=255)
aCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc < 1:3345249/93‑1 (MQ=255)
cAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTg > 1:2332538/1‑93 (MQ=255)
aaCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCTTCGAGAGATTTACCTTCTGc > 1:3612561/1‑93 (MQ=255)
aCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGcc > 2:3418720/1‑93 (MQ=255)
aCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGcc < 2:5455010/93‑1 (MQ=255)
cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa < 2:3893422/93‑1 (MQ=255)
cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa < 1:5866144/93‑1 (MQ=255)
gAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAg < 1:5954335/93‑1 (MQ=255)
gCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAgcg > 1:3134456/1‑93 (MQ=255)
ttGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGcc > 1:73618/1‑93 (MQ=255)
tGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGCAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGGGCCt > 2:3770962/1‑93 (MQ=255)
gagaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg > 2:2308333/1‑93 (MQ=255)
gagaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCATCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg > 2:5424400/1‑93 (MQ=255)
agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGa > 2:3042977/1‑93 (MQ=255)
agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGa < 1:5760814/93‑1 (MQ=255)
agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAATTACCTTCTGCCAGCGCCTGa > 2:810319/1‑93 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg > 1:3012937/1‑93 (MQ=255)
gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg < 2:4400573/93‑1 (MQ=255)
gCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCaa > 2:4326743/1‑93 (MQ=255)
cGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAt < 2:4908767/93‑1 (MQ=255)
gACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAtt < 1:4600283/93‑1 (MQ=255)
gCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGc > 1:5969840/1‑93 (MQ=255)
cGGACGCGCCCTAGCGGCGACATCCGGCCTCCGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt > 2:5840646/1‑93 (MQ=255)
cGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt < 1:4860810/93‑1 (MQ=255)
cgcgCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGgt < 1:1070685/93‑1 (MQ=255)
gcgcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGgtg < 1:2899568/93‑1 (MQ=255)
gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa < 1:5646517/93‑1 (MQ=255)
gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa > 2:2960681/1‑93 (MQ=255)
gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa < 2:402619/93‑1 (MQ=255)
cccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTAc < 2:1308758/93‑1 (MQ=255)
cccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTCGCTTCGGTGTag > 2:1565949/1‑92 (MQ=255)
ccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACg > 2:504143/1‑93 (MQ=255)
tAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGc > 2:76954/1‑93 (MQ=255)
|
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC > NC_000913/2796001‑2796180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTG > NC_000913/2795998‑2796183
|
CAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCG > SRR4302533.2681107/1‑94 (MQ=60)
CAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCG < SRR4302533.5898038/94‑1 (MQ=60)
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG < SRR4302533.5374285/94‑1 (MQ=60)
AGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGG > SRR4302533.3410056/1‑94 (MQ=60)
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCG < SRR4302533.4691027/94‑1 (MQ=60)
GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCG > SRR4302533.5924300/1‑94 (MQ=60)
AATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGA > SRR4302533.1001015/1‑94 (MQ=60)
AATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGA > SRR4302533.3175085/1‑94 (MQ=60)
AATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTCGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGA < SRR4302533.4113608/94‑1 (MQ=60)
CAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAT > SRR4302533.6257207/1‑94 (MQ=60)
AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATC < SRR4302533.848462/94‑1 (MQ=60)
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC < SRR4302533.5152807/94‑1 (MQ=60)
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCC < SRR4302533.52916/94‑1 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG < SRR4302533.6024387/94‑1 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG > SRR4302533.5838656/1‑94 (MQ=60)
CGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCG > SRR4302533.6305754/1‑94 (MQ=60)
GGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGG < SRR4302533.4479081/94‑1 (MQ=60)
GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGC > SRR4302533.749407/1‑94 (MQ=60)
TTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCC < SRR4302533.517418/94‑1 (MQ=60)
TTGTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCC < SRR4302533.4461474/94‑1 (MQ=60)
TTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCA < SRR4302533.4172306/94‑1 (MQ=60)
TGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAG < SRR4302533.2829621/94‑1 (MQ=60)
TGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAG < SRR4302533.1028485/94‑1 (MQ=60)
TGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTA < SRR4302533.1505018/94‑1 (MQ=60)
TGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTA < SRR4302533.4488569/94‑1 (MQ=60)
TGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTA < SRR4302533.1287864/94‑1 (MQ=60)
TGGAATGGCAAGGTTGTTAGAAAAGATGCCGTGGAACCAACGCGCTGGAGAAGCGCCGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTA < SRR4302533.3483315/94‑1 (MQ=60)
GGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAA < SRR4302533.4079626/94‑1 (MQ=60)
GAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAT > SRR4302533.3881790/1‑94 (MQ=60)
GAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAT < SRR4302533.1342989/94‑1 (MQ=60)
AATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATT > SRR4302533.3866432/1‑94 (MQ=60)
AATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATT > SRR4302533.4913591/1‑94 (MQ=60)
ATGGCAGGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA < SRR4302533.1118961/94‑1 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA < SRR4302533.3849464/94‑1 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA > SRR4302533.136326/1‑94 (MQ=60)
ATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTA < SRR4302533.1784089/94‑1 (MQ=60)
TGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAG < SRR4302533.120204/94‑1 (MQ=60)
GGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGA > SRR4302533.1990377/1‑94 (MQ=60)
GGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGA < SRR4302533.2954476/94‑1 (MQ=60)
GCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGAT < SRR4302533.4064749/94‑1 (MQ=60)
CAAGTTTGTTAGATAAGATGCCGTAGAACCAACGACCTTGAGAAGCGACACCGGAGGCGCCATAGCGGCGACATCCGGCCTCAGTAATTAGATC < SRR4302533.5388612/94‑1 (MQ=60)
CAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATC > SRR4302533.339686/1‑94 (MQ=60)
CAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATC < SRR4302533.5232701/94‑1 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302533.4127258/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA < SRR4302533.3456630/94‑1 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA > SRR4302533.4127259/1‑94 (MQ=60)
AAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCA < SRR4302533.3771026/94‑1 (MQ=60)
AGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAG < SRR4302533.357991/94‑1 (MQ=60)
AGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAG < SRR4302533.5054626/94‑1 (MQ=60)
TTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAA < SRR4302533.1649687/94‑1 (MQ=60)
TGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAA > SRR4302533.2011582/1‑94 (MQ=60)
TGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAA < SRR4302533.4903513/94‑1 (MQ=60)
GTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAT < SRR4302533.1982730/94‑1 (MQ=60)
TAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCG < SRR4302533.3359872/94‑1 (MQ=60)
TAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCG > SRR4302533.3294401/1‑94 (MQ=60)
GATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTC > SRR4302533.2684207/1‑94 (MQ=60)
AATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTC < SRR4302533.3765636/94‑1 (MQ=60)
ATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCG > SRR4302533.989404/1‑94 (MQ=60)
ATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCG > SRR4302533.1018126/1‑94 (MQ=60)
ATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCCCAGTAATTAGATCAGGAAATCGTCG > SRR4302533.5289531/1‑94 (MQ=60)
ATAAGATGACGTGGAACCACTGCGCTTGAGACGCGACGCCGGCCGCGCCCTAGCGGCAACATCCGCCCTCAGTAATTAGATCAGGAAATCGTCG < SRR4302533.4576138/94‑1 (MQ=53)
AAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAG < SRR4302533.2134319/94‑1 (MQ=60)
AAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAG < SRR4302533.3466103/94‑1 (MQ=60)
AAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAG < SRR4302533.1040512/94‑1 (MQ=60)
AGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGA > SRR4302533.2922920/1‑94 (MQ=60)
ATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGA > SRR4302533.1666296/1‑94 (MQ=60)
TGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAT < SRR4302533.954111/94‑1 (MQ=60)
GCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATT > SRR4302533.4367398/1‑94 (MQ=60)
CCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTT > SRR4302533.923484/1‑94 (MQ=60)
CCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTT > SRR4302533.1364185/1‑94 (MQ=60)
CGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTA > SRR4302533.3979066/1‑94 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGTCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAC < SRR4302533.4249836/94‑1 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAC < SRR4302533.2934840/94‑1 (MQ=60)
GTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAC < SRR4302533.1244603/94‑1 (MQ=60)
TGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACC > SRR4302533.1378503/1‑94 (MQ=60)
GGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCT < SRR4302533.1065510/94‑1 (MQ=60)
AACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTC < SRR4302533.2441504/94‑1 (MQ=60)
AACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTC > SRR4302533.3610253/1‑94 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302533.2441649/94‑1 (MQ=60)
ACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCT < SRR4302533.3365917/94‑1 (MQ=60)
CCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTG > SRR4302533.618536/1‑94 (MQ=60)
CCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTG > SRR4302533.2346979/1‑94 (MQ=60)
CAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCTTCGAGAGATTTACCTTCTGC > SRR4302533.3634794/1‑94 (MQ=60)
AACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCC > SRR4302533.1499280/1‑94 (MQ=60)
CGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAG < SRR4302533.5901605/94‑1 (MQ=60)
GAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGC > SRR4302533.387174/1‑94 (MQ=60)
GAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGC < SRR4302533.5990352/94‑1 (MQ=60)
AGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCG > SRR4302533.3153730/1‑94 (MQ=60)
CTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCC > SRR4302533.74091/1‑94 (MQ=60)
CTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCC > SRR4302533.6324204/1‑94 (MQ=60)
CTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCC > SRR4302533.2193965/1‑94 (MQ=60)
GAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGA > SRR4302533.6002620/1‑94 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG > SRR4302533.3031369/1‑94 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG > SRR4302533.3294332/1‑94 (MQ=60)
AGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAG < SRR4302533.5795574/94‑1 (MQ=60)
GAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGC > SRR4302533.6277560/1‑94 (MQ=60)
GAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGC < SRR4302533.1078618/94‑1 (MQ=60)
CGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATT < SRR4302533.2060729/94‑1 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > SRR4302533.2501290/1‑94 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG > SRR4302533.5737315/1‑94 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG < SRR4302533.5516674/94‑1 (MQ=60)
GACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTG < SRR4302533.4628152/94‑1 (MQ=60)
CGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC > SRR4302533.6005978/1‑94 (MQ=60)
CGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGC < SRR4302533.5047359/94‑1 (MQ=60)
CCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTT < SRR4302533.4538681/94‑1 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC > SRR4302533.3147273/1‑94 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < SRR4302533.4890270/94‑1 (MQ=60)
CGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTC < SRR4302533.4890271/94‑1 (MQ=60)
GGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCG > SRR4302533.2391067/1‑94 (MQ=60)
GACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGG < SRR4302533.3946760/94‑1 (MQ=60)
CGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTG < SRR4302533.1076993/94‑1 (MQ=60)
GCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGT < SRR4302533.2917386/94‑1 (MQ=60)
GCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTAC < SRR4302533.5680651/94‑1 (MQ=60)
CCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGG > SRR4302533.1290981/1‑94 (MQ=60)
CTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGC > SRR4302533.3659309/1‑94 (MQ=60)
TAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC > SRR4302533.1517648/1‑94 (MQ=60)
AGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCC > SRR4302533.5931228/1‑94 (MQ=60)
GCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCT < SRR4302533.1523873/94‑1 (MQ=60)
CGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTG > SRR4302533.6219995/1‑94 (MQ=60)
|
CAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTG > NC_000913/2795998‑2796183
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
