Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,842,316 T→C T154A (ACT→GCT)  hycF ← putative iron‑sulfur protein of hydrogenase 3

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,842,3160TC100.0% 900.1 / NA 277T154A (ACT→GCT) hycFputative iron‑sulfur protein of hydrogenase 3
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (148/129);  total (148/129)

Only 100 of 291 total aligned reads displayed.

TTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGTCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGA  >  NC_000913/2842226‑2842405
                                                                                          |                                                                                         
ttGCTCATCAGATGGCCTCTTTCATATGGCGAGTCGGATCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGcct                                                                                         >  2:5123031/1‑93 (MQ=255)
ttGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGcct                                                                                         <  2:4642048/93‑1 (MQ=255)
 tGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGcctc                                                                                        <  2:9446235/93‑1 (MQ=255)
   cTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCaa                                                                                      >  1:185884/1‑93 (MQ=255)
    tcatcaGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCaaa                                                                                     <  1:4412800/93‑1 (MQ=255)
    tcatcaGATGGCCTCTTTCATAGGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCaaa                                                                                     <  1:1443176/93‑1 (MQ=255)
      atcaGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGc                                                                                   >  1:393163/1‑93 (MQ=255)
       tcaGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCt                                                                                  >  1:1647644/1‑93 (MQ=255)
        caGATGGCGTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAATCtt                                                                                 <  2:6555876/93‑1 (MQ=255)
        caGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCtt                                                                                 <  1:5998655/93‑1 (MQ=255)
        caGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCtt                                                                                 <  1:5367089/93‑1 (MQ=255)
         aGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCTCCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCtgt                                                                                >  1:8892212/1‑91 (MQ=255)
         aGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCttt                                                                                <  1:7349483/93‑1 (MQ=255)
          gATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTc                                                                               >  1:10000074/1‑93 (MQ=255)
          gATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTc                                                                               >  2:2543290/1‑93 (MQ=255)
          gATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTc                                                                               >  2:5545866/1‑93 (MQ=255)
           aTGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTcg                                                                              <  2:348233/93‑1 (MQ=255)
            tGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAACGCTTTcgc                                                                             >  2:7725173/1‑93 (MQ=255)
            tGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTcgc                                                                             >  1:9031398/1‑93 (MQ=255)
             ggCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCCTTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTcgcg                                                                            >  1:1385445/1‑93 (MQ=255)
               ccTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggt                                                                          <  2:6275063/93‑1 (MQ=255)
                ctctTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggtg                                                                         >  2:9668922/1‑93 (MQ=255)
                 tctTTCATATGGCGAGTCCGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggtgg                                                                        >  2:7093259/1‑93 (MQ=255)
                 tctTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGTAAGCCTCAAAGCTTTCGCggtgg                                                                        >  2:6578380/1‑93 (MQ=255)
                 tctTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggtgg                                                                        >  2:8697421/1‑93 (MQ=255)
                 tctTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggtgg                                                                        >  2:2101277/1‑93 (MQ=255)
                  ctTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCggtggt                                                                       >  2:8553911/1‑93 (MQ=255)
                   tttCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGtt                                                                      <  2:1561311/93‑1 (MQ=255)
                    ttCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGttt                                                                     >  2:8729443/1‑93 (MQ=255)
                     tCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGtttt                                                                    >  2:4375267/1‑93 (MQ=255)
                     tCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGtttt                                                                    >  1:9090861/1‑93 (MQ=255)
                     tCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGtttt                                                                    >  1:9552426/1‑93 (MQ=255)
                       atatGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTcc                                                                  >  2:2181598/1‑93 (MQ=255)
                        tatGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcg                                                                 <  2:6848211/93‑1 (MQ=255)
                        tatGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcg                                                                 >  2:1895418/1‑93 (MQ=255)
                        tatGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcg                                                                 >  2:3616481/1‑93 (MQ=255)
                         atGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcgc                                                                <  2:9714153/93‑1 (MQ=255)
                           ggCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcgcgc                                                              >  2:6445421/1‑93 (MQ=255)
                           ggCGAGTCAGTGCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCcgcgc                                                              <  2:390265/93‑1 (MQ=255)
                              gAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGc                                                           <  2:9072916/93‑1 (MQ=255)
                              gAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGc                                                           >  2:3107203/1‑93 (MQ=255)
                              caGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGc                                                           <  2:2695125/92‑1 (MQ=255)
                               aGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCt                                                          >  1:5809432/1‑93 (MQ=255)
                                gTCAGTTCAATACGGTCGGACGGTACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTg                                                         >  2:6709573/1‑93 (MQ=255)
                                 tCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGt                                                        >  2:5874570/1‑93 (MQ=255)
                                 tCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGt                                                        >  2:4295590/1‑93 (MQ=255)
                                    gTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGc                                                     <  2:5045711/93‑1 (MQ=255)
                                     ttCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGcc                                                    >  1:815842/1‑93 (MQ=255)
                                     ttCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGcc                                                    >  2:4860184/1‑93 (MQ=255)
                                      tCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCg                                                   >  1:1187192/1‑93 (MQ=255)
                                       cAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGt                                                  <  2:2561558/93‑1 (MQ=255)
                                          tACGCTCGGACGGCACCAGGCATTTCTTGCGCTTCCACTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTtgt                                               <  1:5414991/93‑1 (MQ=255)
                                            cGGTCGGACGTCACTAGGCATTTCTGGCGCTTACATTCCGGGCAAACCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTtgtgt                                             >  2:6925668/1‑92 (MQ=255)
                                             ggTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCt                                            >  1:2581416/1‑93 (MQ=255)
                                             ggTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCt                                            >  1:9218720/1‑93 (MQ=255)
                                                 ggACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAag                                        >  1:2003722/1‑93 (MQ=255)
                                                  gACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagc                                       >  1:6974879/1‑93 (MQ=255)
                                                  gACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagc                                       >  1:5570862/1‑93 (MQ=255)
                                                  gACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagc                                       >  1:3120226/1‑93 (MQ=255)
                                                    cGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagcag                                     <  2:2813180/93‑1 (MQ=255)
                                                     ggCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagcagc                                    >  2:6401759/1‑93 (MQ=255)
                                                     ggCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAagcagc                                    <  2:8189118/93‑1 (MQ=255)
                                                      gCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAgcg                                   <  1:7894768/93‑1 (MQ=255)
                                                      gCACCAGGCATTTCCGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAgcg                                   >  1:5640763/1‑93 (MQ=255)
                                                         ccAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCaa                                >  1:1082033/1‑93 (MQ=255)
                                                         ccAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCaa                                >  1:9966946/1‑93 (MQ=255)
                                                          cAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAAt                               <  2:2820885/93‑1 (MQ=255)
                                                          cAGGCATTTCTGGCGCTTACATTCCGGGAAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAAt                               <  2:5423087/93‑1 (MQ=255)
                                                           aGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATg                              <  1:3287660/93‑1 (MQ=255)
                                                            ggCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATgg                             <  2:7849911/93‑1 (MQ=255)
                                                             gCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGc                            <  2:4911451/93‑1 (MQ=255)
                                                             gCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGc                            <  1:9842817/93‑1 (MQ=255)
                                                             gCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGc                            <  1:2333942/93‑1 (MQ=255)
                                                             gCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGc                            <  1:8324932/93‑1 (MQ=255)
                                                              cATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCg                           <  1:775125/93‑1 (MQ=255)
                                                               aTTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGt                          >  1:6448977/1‑93 (MQ=255)
                                                                tttCTGGCTCTTACATTCCGGGCAAGCCTCAAAGCTGTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTa                         <  1:2902213/93‑1 (MQ=255)
                                                                tttCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTa                         <  2:6305960/93‑1 (MQ=255)
                                                                tttCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCACCGGAATGGCGtg                         >  1:7505222/1‑92 (MQ=255)
                                                                    tGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCg                     <  1:8636714/93‑1 (MQ=255)
                                                                     ggCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGa                    <  2:10015141/93‑1 (MQ=255)
                                                                     ggCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGa                    >  2:846043/1‑93 (MQ=255)
                                                                       cgcTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGAtc                  <  1:9805485/93‑1 (MQ=255)
                                                                         cTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGAtctc                >  2:745972/1‑93 (MQ=255)
                                                                          ttACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATctct               >  1:8582158/1‑93 (MQ=255)
                                                                           tACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTTAGCAGCGCAATGGCGTAGTCGATTTCtt              >  2:8096434/1‑93 (MQ=255)
                                                                           tACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCtt              >  1:6194774/1‑93 (MQ=255)
                                                                           tACATTCCGGGCAAGCCTCAAAGCTTTCGAGGTGGTTTTCCGCGCGGATGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCtt              >  2:6218841/1‑93 (MQ=255)
                                                                             cATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTc            >  1:5127721/1‑93 (MQ=255)
                                                                              atcccGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCt           <  2:831624/90‑1 (MQ=255)
                                                                              aTTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCt           <  1:1806349/93‑1 (MQ=255)
                                                                              aTTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCt           <  1:2369453/93‑1 (MQ=255)
                                                                               ttCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTATGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTg          <  1:4627223/93‑1 (MQ=255)
                                                                                 ccGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGa        <  2:1049416/93‑1 (MQ=255)
                                                                                 ccGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGa        >  1:3641039/1‑93 (MQ=255)
                                                                                 ccGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGa        <  2:2578596/93‑1 (MQ=255)
                                                                                    ggCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACgg     <  2:136959/93‑1 (MQ=255)
                                                                                    ggCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACgg     >  2:1629325/1‑93 (MQ=255)
                                                                                     gCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGc    >  1:5023374/1‑93 (MQ=255)
                                                                                       aaGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGa  >  1:4551307/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGTCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGA  >  NC_000913/2842226‑2842405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGTCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAGG  >  NC_000913/2842224‑2842409
                                                                                            |                                                                                             
AATTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCC                                                                                              <  SRR4302540.8146998/94‑1 (MQ=60)
  TTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTC                                                                                            >  SRR4302540.1117011/1‑94 (MQ=60)
    GCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAA                                                                                          >  SRR4302540.187731/1‑94 (MQ=60)
     CTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAA                                                                                         <  SRR4302540.4098025/94‑1 (MQ=60)
      TCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAG                                                                                        <  SRR4302540.4460629/94‑1 (MQ=60)
      TCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAG                                                                                        <  SRR4302540.1374173/94‑1 (MQ=60)
      TCATCAGATGGCCTCTTTCATAGGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAG                                                                                        <  SRR4302540.1458857/94‑1 (MQ=60)
       CATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGC                                                                                       >  SRR4302540.4721851/1‑94 (MQ=60)
       CATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGC                                                                                       >  SRR4302540.5786668/1‑94 (MQ=60)
       CATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGC                                                                                       >  SRR4302540.397230/1‑94 (MQ=60)
        ATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCT                                                                                      >  SRR4302540.1665625/1‑94 (MQ=60)
         TCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTT                                                                                     <  SRR4302540.1680374/94‑1 (MQ=60)
          CAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCTCCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTGT                                                                                    >  SRR4302540.8995148/1‑94 (MQ=60)
          CAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTT                                                                                    >  SRR4302540.4019087/1‑94 (MQ=60)
          CAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTT                                                                                    <  SRR4302540.6065131/94‑1 (MQ=60)
          CAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTT                                                                                    <  SRR4302540.5426064/94‑1 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   >  SRR4302540.10116578/1‑94 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   <  SRR4302540.3735170/94‑1 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   <  SRR4302540.7431475/94‑1 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   >  SRR4302540.5155281/1‑94 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   <  SRR4302540.2961864/94‑1 (MQ=60)
           AGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTC                                                                                   <  SRR4302540.1344261/94‑1 (MQ=60)
             ATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGC                                                                                 >  SRR4302540.9139783/1‑94 (MQ=60)
             ATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGC                                                                                 >  SRR4302540.9971050/1‑94 (MQ=60)
              TGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCCTTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCG                                                                                >  SRR4302540.1400252/1‑94 (MQ=60)
              TGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCG                                                                                <  SRR4302540.6246621/94‑1 (MQ=60)
               GGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGG                                                                               <  SRR4302540.1905062/94‑1 (MQ=60)
                  CTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGG                                                                            >  SRR4302540.1558741/1‑94 (MQ=60)
                   TCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCGTTTCTGGCGCTTACATTCCCGGCAAGCCTCAACGCTTTCGCGGTGGT                                                                           >  SRR4302540.9191962/1‑94 (MQ=60)
                    CTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTT                                                                          >  SRR4302540.9954648/1‑94 (MQ=60)
                    CTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTT                                                                          >  SRR4302540.748006/1‑94 (MQ=60)
                     TTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTT                                                                         >  SRR4302540.8371767/1‑94 (MQ=60)
                     TTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTT                                                                         >  SRR4302540.2665535/1‑94 (MQ=60)
                      TTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTT                                                                        <  SRR4302540.1154352/94‑1 (MQ=60)
                      TTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTT                                                                        >  SRR4302540.9200078/1‑94 (MQ=60)
                      TTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTT                                                                        >  SRR4302540.9665414/1‑94 (MQ=60)
                       TCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTC                                                                       >  SRR4302540.9027539/1‑94 (MQ=60)
                        TATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCC                                                                      <  SRR4302540.7558002/94‑1 (MQ=60)
                         ATATGGCGAGTCAGTTCAATACGGTCGGACGGCCCCAGGCATTTCTGGCGCTTTCATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCG                                                                     <  SRR4302540.2978346/94‑1 (MQ=60)
                         ATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCG                                                                     >  SRR4302540.1060088/1‑94 (MQ=60)
                             GGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCG                                                                 <  SRR4302540.2432133/94‑1 (MQ=60)
                               CGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGC                                                               >  SRR4302540.1721439/1‑94 (MQ=60)
                               CGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGC                                                               >  SRR4302540.9782226/1‑94 (MQ=60)
                                GAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCT                                                              >  SRR4302540.5873640/1‑94 (MQ=60)
                                GAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCT                                                              >  SRR4302540.251161/1‑94 (MQ=60)
                                 AGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTG                                                             <  SRR4302540.4590831/94‑1 (MQ=60)
                                  GTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGT                                                            >  SRR4302540.8044597/1‑94 (MQ=60)
                                    CAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCG                                                          <  SRR4302540.3435102/94‑1 (MQ=60)
                                     AGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGC                                                         >  SRR4302540.3842663/1‑94 (MQ=60)
                                      GTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCC                                                        <  SRR4302540.7786687/94‑1 (MQ=60)
                                      GTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCC                                                        >  SRR4302540.824510/1‑94 (MQ=60)
                                       TTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCG                                                       >  SRR4302540.8501091/1‑94 (MQ=60)
                                       TTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCG                                                       >  SRR4302540.1199436/1‑94 (MQ=60)
                                         CAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTT                                                     >  SRR4302540.83562/1‑94 (MQ=60)
                                         CAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTT                                                     >  SRR4302540.5891344/1‑94 (MQ=60)
                                         CAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTT                                                     >  SRR4302540.5891345/1‑94 (MQ=60)
                                          AATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTTTCGCCGTTG                                                    >  SRR4302540.8926123/1‑94 (MQ=60)
                                          AATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTG                                                    <  SRR4302540.455548/94‑1 (MQ=60)
                                           ATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGT                                                   <  SRR4302540.5117600/94‑1 (MQ=60)
                                            TACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTG                                                  <  SRR4302540.5474529/94‑1 (MQ=60)
                                            TACGCTCGGACGGCACCAGGCATTTCTTGCGCTTCCACTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTG                                                  <  SRR4302540.5474530/94‑1 (MQ=60)
                                              CGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCT                                                >  SRR4302540.2609243/1‑94 (MQ=60)
                                              CGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCT                                                >  SRR4302540.9329296/1‑94 (MQ=60)
                                                  CGGACGGCACCAGTCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAG                                            <  SRR4302540.10097559/94‑1 (MQ=60)
                                                  CGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAG                                            >  SRR4302540.2025412/1‑94 (MQ=60)
                                                  CGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAG                                            <  SRR4302540.3533636/94‑1 (MQ=60)
                                                   GGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGC                                           >  SRR4302540.8165554/1‑94 (MQ=60)
                                                   GGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGC                                           >  SRR4302540.3154330/1‑94 (MQ=60)
                                                   GGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGC                                           >  SRR4302540.7052388/1‑94 (MQ=60)
                                                   GGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGC                                           >  SRR4302540.5632200/1‑94 (MQ=60)
                                                   GGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGC                                           >  SRR4302540.6147222/1‑94 (MQ=60)
                                                    GACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCA                                          <  SRR4302540.1452316/94‑1 (MQ=60)
                                                     ACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAG                                         <  SRR4302540.184984/94‑1 (MQ=60)
                                                       GGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCG                                       >  SRR4302540.5837273/1‑94 (MQ=60)
                                                       GGCACCAGGCATTTCCGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCG                                       >  SRR4302540.5702848/1‑94 (MQ=60)
                                                        GCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGC                                      <  SRR4302540.10020753/94‑1 (MQ=60)
                                                        GCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGC                                      <  SRR4302540.7986888/94‑1 (MQ=60)
                                                          ACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAA                                    >  SRR4302540.1093114/1‑94 (MQ=60)
                                                          ACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAA                                    >  SRR4302540.10083227/1‑94 (MQ=60)
                                                           CCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAAT                                   <  SRR4302540.9453566/94‑1 (MQ=60)
                                                           CCAGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAAT                                   <  SRR4302540.6826395/94‑1 (MQ=60)
                                                             AGGCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGG                                 <  SRR4302540.3323621/94‑1 (MQ=60)
                                                               GCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCG                               <  SRR4302540.9957879/94‑1 (MQ=60)
                                                               GCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCG                               <  SRR4302540.2359089/94‑1 (MQ=60)
                                                               GCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCG                               <  SRR4302540.4617747/94‑1 (MQ=60)
                                                               GCATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCG                               <  SRR4302540.8421554/94‑1 (MQ=60)
                                                                CATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGT                              >  SRR4302540.9195229/1‑94 (MQ=60)
                                                                CATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGT                              <  SRR4302540.783361/94‑1 (MQ=60)
                                                                CATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGT                              >  SRR4302540.4701922/1‑94 (MQ=60)
                                                                CATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGT                              <  SRR4302540.863383/94‑1 (MQ=60)
                                                                CATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGT                              >  SRR4302540.6520764/1‑94 (MQ=60)
                                                                 ATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTG                             >  SRR4302540.7589108/1‑94 (MQ=60)
                                                                 ATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTA                             >  SRR4302540.5613959/1‑94 (MQ=60)
                                                                 ATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTA                             >  SRR4302540.9793535/1‑94 (MQ=60)
                                                                 ATTTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCACCGGAATGGCGTG                             >  SRR4302540.7589107/1‑94 (MQ=60)
                                                                  TTTCTGGCTCTTACATTCCGGGCAAGCCTCAAAGCTGTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAG                            <  SRR4302540.2933888/94‑1 (MQ=60)
                                                                   TTCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTCAGCAGCGCAATGGCGTAGT                           >  SRR4302540.2381222/1‑94 (MQ=60)
                                                                    TTTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTC                          <  SRR4302540.1977098/94‑1 (MQ=60)
                                                                    TCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTC                          <  SRR4302540.8691303/94‑1 (MQ=60)
                                                                    TCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTC                          <  SRR4302540.5269966/94‑1 (MQ=60)
                                                                    TCTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTC                          <  SRR4302540.5313206/94‑1 (MQ=60)
                                                                     CTGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCG                         >  SRR4302540.8939138/1‑94 (MQ=60)
                                                                      TGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGA                        <  SRR4302540.8737034/94‑1 (MQ=60)
                                                                      TGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGA                        >  SRR4302540.5696244/1‑94 (MQ=60)
                                                                      TGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGA                        <  SRR4302540.8889169/94‑1 (MQ=60)
                                                                      TGGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGA                        <  SRR4302540.6354005/94‑1 (MQ=60)
                                                                       GGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGAT                       >  SRR4302540.2057493/1‑94 (MQ=60)
                                                                       GGCGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGAT                       >  SRR4302540.9498617/1‑94 (MQ=60)
                                                                         CGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCT                     <  SRR4302540.9320977/94‑1 (MQ=60)
                                                                         CGCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCT                     <  SRR4302540.9920264/94‑1 (MQ=60)
                                                                          GCTTACATTCCGGGCACGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTC                    <  SRR4302540.9061937/94‑1 (MQ=60)
                                                                          GCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTC                    >  SRR4302540.1583590/1‑94 (MQ=60)
                                                                          GCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTC                    >  SRR4302540.3158106/1‑94 (MQ=60)
                                                                          GCTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTC                    >  SRR4302540.2091811/1‑94 (MQ=60)
                                                                           CTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCT                   >  SRR4302540.8681921/1‑94 (MQ=60)
                                                                           CTTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCT                   <  SRR4302540.7388406/94‑1 (MQ=60)
                                                                            TTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTT                  >  SRR4302540.6263745/1‑94 (MQ=60)
                                                                            TTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTT                  >  SRR4302540.5663029/1‑94 (MQ=60)
                                                                            TTACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTT                  >  SRR4302540.1419333/1‑94 (MQ=60)
                                                                             TACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTT                 >  SRR4302540.4636717/1‑94 (MQ=60)
                                                                             TACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGAGCAATGGCGTAGTCGATCTCTTT                 <  SRR4302540.1854366/94‑1 (MQ=60)
                                                                              ACATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTC                >  SRR4302540.5183257/1‑94 (MQ=60)
                                                                               CATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCT               >  SRR4302540.5609654/1‑94 (MQ=60)
                                                                               CATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCT               <  SRR4302540.7880958/94‑1 (MQ=60)
                                                                                ATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTG              <  SRR4302540.2394970/94‑1 (MQ=60)
                                                                                ATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTG              <  SRR4302540.1826028/94‑1 (MQ=60)
                                                                                ATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTG              >  SRR4302540.2374535/1‑94 (MQ=60)
                                                                                ATTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTG              >  SRR4302540.7136439/1‑94 (MQ=60)
                                                                                 TTCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTATGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGG             <  SRR4302540.4676796/94‑1 (MQ=60)
                                                                                  TCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGA            >  SRR4302540.3680912/1‑94 (MQ=60)
                                                                                  TCCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGA            >  SRR4302540.9298298/1‑94 (MQ=60)
                                                                                   CCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGAC           <  SRR4302540.3244374/94‑1 (MQ=60)
                                                                                   CCGGGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGAC           <  SRR4302540.6392966/94‑1 (MQ=60)
                                                                                      GGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGC        >  SRR4302540.5077750/1‑94 (MQ=60)
                                                                                      GGCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGC        >  SRR4302540.8730050/1‑94 (MQ=60)
                                                                                       GCAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCG       <  SRR4302540.6804965/94‑1 (MQ=60)
                                                                                        CAAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGA      >  SRR4302540.4600527/1‑94 (MQ=60)
                                                                                         AAGCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAA     >  SRR4302540.4119692/1‑94 (MQ=60)
                                                                                           GCCTCTAAGCTTTCGCGGTGGTTTTCCGCGCTGCTCTCGCCGTGGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAG   <  SRR4302540.581592/94‑1 (MQ=60)
                                                                                           GCCTCAAAGCTTTCGCGGTGGTTTTCCTCGCCGCTGCCGACGTTGTGCTTAAGCAGCGCAACGGCGCAGTCGATATCTTTCTGGAgcgcggaag   >  SRR4302540.8947878/1‑85 (MQ=55)
                                                                                           GCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAG   <  SRR4302540.581593/94‑1 (MQ=60)
                                                                                           GCCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAG   <  SRR4302540.5310288/94‑1 (MQ=60)
                                                                                            CCTCAAAGCTTTCGCGGTGGTTTTCAGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAGG  <  SRR4302540.9297295/94‑1 (MQ=60)
                                                                                            |                                                                                             
AATTGCTCATCAGATGGCCTCTTTCATATGGCGAGTCAGTTCAATACGGTCGGACGGCACCAGGCATTTCTGGCGCTTACATTCCGGGCAAGTCTCAAAGCTTTCGCGGTGGTTTTCCGCGCGGCTGTCGCCGTTGTGCTTAAGCAGCGCAATGGCGTAGTCGATCTCTTTCTGGACGGCGAAAGG  >  NC_000913/2842224‑2842409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑