Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,885,561 (C)5→4 intergenic (‑319/+40) ygcB ← / ← cysH hypothetical protein/3'‑phosphoadenosine 5'‑phosphosulfate reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,885,5570C.100.0% 1562.8 / NA 344intergenic (‑315/+44)ygcB/cysHhypothetical protein/3'‑phosphoadenosine 5'‑phosphosulfate reductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (208/136);  total (208/136)

Only 100 of 394 total aligned reads displayed.

AGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACG  >  NC_000913/2885465‑2885645
                                                                                            |                                                                                        
 gCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGcc                                                                                         <  1:8268739/93‑1 (MQ=255)
  ccTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccc                                                                                        >  2:1487386/1‑93 (MQ=255)
   cTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGcccc                                                                                       >  1:6099249/1‑93 (MQ=255)
   cTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGcccc                                                                                       <  1:8076555/93‑1 (MQ=255)
   cTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGcccc                                                                                       <  2:3528842/93‑1 (MQ=255)
    tCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGcccca                                                                                      >  2:752775/1‑92 (MQ=255)
     cAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     <  1:1623869/93‑3 (MQ=255)
     cAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     >  2:8506949/1‑91 (MQ=255)
     cAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     >  2:5899109/1‑91 (MQ=255)
     cAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     <  1:8584604/93‑3 (MQ=255)
     cAAGAACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     >  2:9695714/1‑91 (MQ=255)
     cAAACACCCGGCGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccat                                                                                     <  2:8903244/93‑3 (MQ=255)
      aaGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGccccatc                                                                                    <  2:7025171/93‑4 (MQ=255)
        gctcccGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCcatcat                                                                                 <  2:4528090/90‑1 (MQ=255)
        gCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCcatcat                                                                                 <  1:4692459/93‑1 (MQ=255)
        gCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCcatcat                                                                                 <  1:89535/93‑1 (MQ=255)
        gCACCCGACGCCATTCTATACCTGATAATTCTGCCCGCGGCTTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCcatcat                                                                                 <  1:1456886/93‑1 (MQ=255)
         cACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCAtt                                                                                >  2:7829279/1‑93 (MQ=255)
         cACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCAtt                                                                                <  1:3599153/93‑1 (MQ=255)
           cccGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTc                                                                              >  2:9839011/1‑93 (MQ=255)
           cccGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTc                                                                              >  2:1708082/1‑93 (MQ=255)
                cGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACa                                                                         >  2:6206673/1‑93 (MQ=255)
                 gCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACag                                                                        >  1:2133707/1‑93 (MQ=255)
                  ccATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACaga                                                                       <  2:3875063/93‑1 (MQ=255)
                   cATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACagag                                                                      <  2:137218/93‑1 (MQ=255)
                    aTTTTATACCAGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAgg                                                                     <  1:7259708/93‑1 (MQ=255)
                    aTTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAgg                                                                     >  1:4521881/1‑93 (MQ=255)
                    aTTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAgg                                                                     >  2:6511659/1‑93 (MQ=255)
                     ttCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGc                                                                    >  1:4976656/1‑93 (MQ=255)
                     ttCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGc                                                                    >  1:2957906/1‑93 (MQ=255)
                     ttCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGc                                                                    <  2:7924402/93‑1 (MQ=255)
                       cTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGt                                                                  <  1:5222017/93‑1 (MQ=255)
                        tataCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGtt                                                                 >  2:7113140/1‑93 (MQ=255)
                        tataCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGtt                                                                 >  2:6720694/1‑93 (MQ=255)
                         ataCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGttt                                                                >  1:9945431/1‑93 (MQ=255)
                          taCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTa                                                               >  2:9628924/1‑93 (MQ=255)
                          taCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTa                                                               >  1:5890250/1‑93 (MQ=255)
                           aCCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTaa                                                              <  2:7244261/93‑1 (MQ=255)
                             cTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAAtt                                                            <  2:8215775/93‑1 (MQ=255)
                              tGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAAttt                                                           >  1:2736567/1‑93 (MQ=255)
                              tGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAAttt                                                           >  2:1863058/1‑93 (MQ=255)
                                aTAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGt                                                         >  1:5550512/1‑93 (MQ=255)
                                 tAATTCTTCCCGCGGCGTTCACGCTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTc                                                        <  2:5494389/93‑1 (MQ=255)
                                  aaTTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTcc                                                       <  2:5381709/93‑1 (MQ=255)
                                  aaTTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTcc                                                       >  2:2845432/1‑93 (MQ=255)
                                   aTTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCg                                                      <  1:3446651/93‑1 (MQ=255)
                                    ttcttcCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCgg                                                     >  1:2455791/1‑93 (MQ=255)
                                    ttcttcCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCgg                                                     <  2:662609/93‑1 (MQ=255)
                                     tcttcCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGc                                                    >  2:5266562/1‑93 (MQ=255)
                                       ttcCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCaa                                                  >  1:2272941/1‑93 (MQ=255)
                                         cccGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAata                                                <  2:1043028/93‑1 (MQ=255)
                                         cccGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAata                                                >  1:3355000/1‑93 (MQ=255)
                                           cgcgGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAtt                                              <  2:230515/93‑1 (MQ=255)
                                           cgcgGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAtt                                              >  1:6647924/1‑93 (MQ=255)
                                           cgcgGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAtt                                              <  2:9231901/93‑1 (MQ=255)
                                            gcggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAttt                                             >  2:9402958/1‑93 (MQ=255)
                                            gcggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAttt                                             >  1:9192552/1‑93 (MQ=255)
                                             cggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTa                                            <  1:5706855/93‑1 (MQ=255)
                                             cggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTa                                            >  1:8999925/1‑93 (MQ=255)
                                              ggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAATATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAc                                           <  1:1222031/93‑1 (MQ=255)
                                              ggcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAc                                           >  1:4012108/1‑93 (MQ=255)
                                               gcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAcc                                          >  1:9735924/1‑93 (MQ=255)
                                               gcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAcc                                          <  1:3801190/93‑1 (MQ=255)
                                               gcgTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAcc                                          <  2:7692092/93‑1 (MQ=255)
                                                 gTTCACGTTTAAAATCAGGAATGGTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt                                        >  1:174889/1‑93 (MQ=255)
                                                 gTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCt                                        >  2:6047914/1‑93 (MQ=255)
                                                  ttCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCtt                                       >  2:3480460/1‑93 (MQ=255)
                                                  ttCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCtt                                       <  2:833385/93‑1 (MQ=255)
                                                  ttCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCtt                                       >  1:7472417/1‑93 (MQ=255)
                                                   tCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTc                                      <  2:4671245/93‑1 (MQ=255)
                                                       gTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCgtgt                                  >  2:2806198/1‑93 (MQ=255)
                                                        tttAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTa                                 >  2:3031935/1‑93 (MQ=255)
                                                        tttAAAATCAGGAACGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTa                                 >  1:9305735/1‑93 (MQ=255)
                                                         taaaaaTCAGGAATTCCGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTaa                                <  2:8620437/91‑1 (MQ=255)
                                                          tAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAc                               >  1:8462545/1‑93 (MQ=255)
                                                          tAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAc                               <  2:90020/93‑1 (MQ=255)
                                                           aaaaTCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAcc                              <  2:8303168/93‑1 (MQ=255)
                                                             aaTCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCca                            >  2:4863394/1‑93 (MQ=255)
                                                               tCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCcaca                          >  2:9072054/1‑93 (MQ=255)
                                                               tCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCcaca                          >  1:1116516/1‑93 (MQ=255)
                                                                cAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACAt                         >  2:4712661/1‑93 (MQ=255)
                                                                  ggAATGCTTCTCGCAAAATAAAAACG‑CCCCATCATTGCTGACAAAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTc                       <  2:7801640/93‑1 (MQ=255)
                                                                  ggAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTc                       >  1:6422569/1‑93 (MQ=255)
                                                                   gAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTcc                      >  1:7626785/1‑93 (MQ=255)
                                                                   gAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTcc                      <  2:3184498/93‑1 (MQ=255)
                                                                      tgctgcTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCtt                   >  2:3756674/1‑93 (MQ=255)
                                                                        ctgctCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCtttt                 >  2:553412/1‑93 (MQ=255)
                                                                        ctgctCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCtttt                 >  1:5110052/1‑93 (MQ=255)
                                                                         tgctCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCttttt                >  2:4090987/1‑93 (MQ=255)
                                                                          gctCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTa               <  1:3189246/93‑1 (MQ=255)
                                                                           ctCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTaa              <  1:8816074/93‑1 (MQ=255)
                                                                             cGCAAAATAAAAACG‑CACCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGc            <  2:4327631/93‑1 (MQ=255)
                                                                              gCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGcc           >  1:2849304/1‑93 (MQ=255)
                                                                               cAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCa          >  1:1989143/1‑93 (MQ=255)
                                                                                aaaaTAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCaa         >  2:3934318/1‑93 (MQ=255)
                                                                                aaaaTAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCaa         >  1:699723/1‑93 (MQ=255)
                                                                                 aaaTAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCaaa        >  1:9557857/1‑93 (MQ=255)
                                                                                  aaTAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCaaaa       >  1:252181/1‑92 (MQ=255)
                                                                                    tAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGaa     >  1:1086807/1‑93 (MQ=255)
                                                                                     aaaaaCG‑CCCCTTCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGaaa    <  2:2023511/93‑1 (MQ=255)
                                                                                            |                                                                                        
AGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACG  >  NC_000913/2885465‑2885645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTC  >  NC_000913/2885468‑2885654
                                                                                             |                                                                                             
CTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCA                                                                                               <  SRR4302540.8170287/94‑1 (MQ=60)
CTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCA                                                                                               >  SRR4302540.7006986/1‑94 (MQ=60)
  CAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATC                                                                                            <  SRR4302540.8684403/94‑1 (MQ=60)
  CAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATC                                                                                            >  SRR4302540.6356495/1‑94 (MQ=60)
  CAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATC                                                                                            <  SRR4302540.1641656/94‑1 (MQ=60)
   AAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCA                                                                                           >  SRR4302540.3043784/1‑94 (MQ=60)
   AAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCA                                                                                           <  SRR4302540.8324556/94‑1 (MQ=60)
    AGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCAT                                                                                          <  SRR4302540.9982311/94‑1 (MQ=60)
     accCCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATT                                                                                         <  SRR4302540.7659503/91‑1 (MQ=60)
     GCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATT                                                                                         <  SRR4302540.90478/94‑1 (MQ=60)
     GCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATT                                                                                         <  SRR4302540.4742629/94‑1 (MQ=60)
     GCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATT                                                                                         <  SRR4302540.1472733/94‑1 (MQ=60)
     GCACCCGACGCCATTCTATACCTGATAATTCTGCCCGCGGCTTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATT                                                                                         <  SRR4302540.1472732/94‑1 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        <  SRR4302540.2545293/94‑1 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        <  SRR4302540.2545292/94‑1 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        >  SRR4302540.2534967/1‑94 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        <  SRR4302540.3303614/94‑1 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        <  SRR4302540.3638481/94‑1 (MQ=60)
      CACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTT                                                                                        <  SRR4302540.3638482/94‑1 (MQ=60)
        CCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCT                                                                                      >  SRR4302540.2704364/1‑94 (MQ=60)
         CCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTG                                                                                     <  SRR4302540.1713403/94‑1 (MQ=60)
          CGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGA                                                                                    >  SRR4302540.1605550/1‑94 (MQ=60)
           GACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGAC                                                                                   <  SRR4302540.9756449/94‑1 (MQ=60)
           GACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGAC                                                                                   <  SRR4302540.4665420/94‑1 (MQ=60)
            ACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACA                                                                                  <  SRR4302540.6773357/94‑1 (MQ=60)
            ACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACA                                                                                  >  SRR4302540.1515986/1‑94 (MQ=60)
             CGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAG                                                                                 <  SRR4302540.9026967/94‑1 (MQ=60)
             CGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAG                                                                                 >  SRR4302540.2156611/1‑94 (MQ=60)
              GCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGA                                                                                >  SRR4302540.2290632/1‑94 (MQ=60)
              GCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGA                                                                                >  SRR4302540.3367670/1‑94 (MQ=60)
               CCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAG                                                                               >  SRR4302540.1171764/1‑94 (MQ=60)
               CCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAG                                                                               >  SRR4302540.9022046/1‑94 (MQ=60)
               CCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAG                                                                               <  SRR4302540.289109/94‑1 (MQ=60)
                CATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGG                                                                              >  SRR4302540.9524319/1‑94 (MQ=60)
                CATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGG                                                                              >  SRR4302540.4570852/1‑94 (MQ=60)
                 ATTTTATACCAGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGC                                                                             <  SRR4302540.7340716/94‑1 (MQ=60)
                 ATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGG                                                                             >  SRR4302540.5268395/1‑94 (MQ=60)
                 ATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGC                                                                             >  SRR4302540.5268396/1‑94 (MQ=60)
                 ATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGC                                                                             >  SRR4302540.5030522/1‑94 (MQ=60)
                 ATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGC                                                                             >  SRR4302540.2990494/1‑94 (MQ=60)
                 ATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAAAG‑CCCCATCATTTCTGACAGAGGG                                                                             >  SRR4302540.2990496/1‑94 (MQ=60)
                  TTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCG                                                                            <  SRR4302540.2744259/94‑1 (MQ=60)
                  TTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAAAG‑GCCCATCATTTCTGACAGAGGCG                                                                            >  SRR4302540.2082252/1‑94 (MQ=60)
                   TCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGT                                                                           <  SRR4302540.1167982/94‑1 (MQ=60)
                    CTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTT                                                                          <  SRR4302540.5278954/94‑1 (MQ=60)
                    CTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTT                                                                          >  SRR4302540.4002202/1‑94 (MQ=60)
                    CTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTT                                                                          >  SRR4302540.975583/1‑94 (MQ=60)
                     TATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTT                                                                         <  SRR4302540.3043876/94‑1 (MQ=60)
                     TATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTT                                                                         >  SRR4302540.10061568/1‑94 (MQ=60)
                      ATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTA                                                                        >  SRR4302540.3471696/1‑94 (MQ=60)
                      ATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTA                                                                        <  SRR4302540.43761/94‑1 (MQ=60)
                      ATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTA                                                                        >  SRR4302540.5955326/1‑94 (MQ=60)
                      ATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTA                                                                        >  SRR4302540.10073037/1‑94 (MQ=60)
                      ATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTA                                                                        >  SRR4302540.10073038/1‑94 (MQ=60)
                       TACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAACCG‑CCCCATCATTTCTGACAGAGGCGTTTAT                                                                       >  SRR4302540.5159271/1‑94 (MQ=60)
                       TACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTCA                                                                       >  SRR4302540.6148939/1‑94 (MQ=60)
                       TACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAA                                                                       >  SRR4302540.9387983/1‑94 (MQ=60)
                        ACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAAT                                                                      >  SRR4302540.9539768/1‑94 (MQ=60)
                          CTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCACAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTT                                                                    >  SRR4302540.7290219/1‑94 (MQ=60)
                          CTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTT                                                                    >  SRR4302540.2766103/1‑94 (MQ=60)
                          CTGATAATTCTTCCCGCAGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CACCATCATTTCTGACAGAGGCGTTTAATTT                                                                    >  SRR4302540.7154914/1‑94 (MQ=60)
                            GATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGT                                                                  >  SRR4302540.5611654/1‑94 (MQ=60)
                            GATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGT                                                                  <  SRR4302540.9552216/94‑1 (MQ=60)
                             ATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTC                                                                 >  SRR4302540.4709783/1‑94 (MQ=60)
                              TAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATACAAACGCCCCC‑TCCTGTCTGACAACGGCGTTGAATTTGTCC                                                                >  SRR4302540.817855/1‑94 (MQ=60)
                              TAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC                                                                <  SRR4302540.4771698/94‑1 (MQ=60)
                              TAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC                                                                <  SRR4302540.884087/94‑1 (MQ=60)
                              TAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGCTTAATTTGTCC                                                                >  SRR4302540.9161846/1‑94 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCGAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              >  SRR4302540.3807999/1‑94 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              >  SRR4302540.7899205/1‑94 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              <  SRR4302540.3484141/94‑1 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              <  SRR4302540.8520192/94‑1 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              >  SRR4302540.2482223/1‑94 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGG                                                              >  SRR4302540.5647058/1‑94 (MQ=60)
                                ATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGC                                                              >  SRR4302540.5647059/1‑94 (MQ=60)
                                  TCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCA                                                            <  SRR4302540.2117814/94‑1 (MQ=60)
                                   CTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAA                                                           >  SRR4302540.5131686/1‑94 (MQ=60)
                                   CTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAA                                                           >  SRR4302540.2297338/1‑94 (MQ=60)
                                     TCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATA                                                         >  SRR4302540.3391768/1‑94 (MQ=60)
                                      CCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATAT                                                        <  SRR4302540.1997859/94‑1 (MQ=60)
                                       CCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATT                                                       >  SRR4302540.6721466/1‑94 (MQ=60)
                                       CCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATT                                                       >  SRR4302540.6483852/1‑94 (MQ=60)
                                       CCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATT                                                       >  SRR4302540.2219917/1‑94 (MQ=60)
                                        CGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTT                                                      >  SRR4302540.9302808/1‑94 (MQ=60)
                                        CGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTT                                                      >  SRR4302540.2877535/1‑94 (MQ=60)
                                         GCGGCGTTCACGTTTACTATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTA                                                     <  SRR4302540.9075634/94‑1 (MQ=60)
                                         GCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTA                                                     <  SRR4302540.9357435/94‑1 (MQ=60)
                                         GCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTA                                                     <  SRR4302540.2900051/94‑1 (MQ=60)
                                         GCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTA                                                     >  SRR4302540.9107903/1‑94 (MQ=60)
                                         GCGGCGTGCACGTTTAAAATCAGGAATTCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTA                                                     <  SRR4302540.2900050/94‑1 (MQ=60)
                                          GGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAC                                                    <  SRR4302540.1935874/94‑1 (MQ=60)
                                          CGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAC                                                    <  SRR4302540.5769684/94‑1 (MQ=60)
                                          CGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAC                                                    >  SRR4302540.4055321/1‑94 (MQ=60)
                                          CGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAC                                                    <  SRR4302540.860209/94‑1 (MQ=60)
                                          CGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTAC                                                    >  SRR4302540.339754/1‑94 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAATATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   <  SRR4302540.1234535/94‑1 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   >  SRR4302540.2814113/1‑94 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   <  SRR4302540.60226/94‑1 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   >  SRR4302540.9850234/1‑94 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   >  SRR4302540.8280763/1‑94 (MQ=60)
                                           GGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACC                                                   >  SRR4302540.9416149/1‑94 (MQ=60)
                                            GCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCC                                                  <  SRR4302540.3842601/94‑1 (MQ=60)
                                             CGTTCACGTTTAAAATCAGGAATGGTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCT                                                 >  SRR4302540.176632/1‑94 (MQ=60)
                                             CGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCT                                                 >  SRR4302540.5281514/1‑94 (MQ=60)
                                             CGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCT                                                 >  SRR4302540.8843249/1‑94 (MQ=60)
                                             CGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCT                                                 >  SRR4302540.174215/1‑94 (MQ=60)
                                             CGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGGCCGGCAATATTTACCCT                                                 >  SRR4302540.9089211/1‑94 (MQ=60)
                                              GTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTT                                                >  SRR4302540.5144220/1‑94 (MQ=60)
                                              GTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTT                                                >  SRR4302540.7555794/1‑94 (MQ=60)
                                              GTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTT                                                >  SRR4302540.7555796/1‑94 (MQ=60)
                                              GTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTT                                                >  SRR4302540.5858196/1‑94 (MQ=60)
                                              GTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTT                                                >  SRR4302540.147155/1‑94 (MQ=60)
                                               ttcctcTTTAAACTCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCCTTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTC                                               <  SRR4302540.7637563/88‑1 (MQ=60)
                                               TTCACGTTTAAAATCAGGAATGCTGCGCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTC                                               <  SRR4302540.1946946/94‑1 (MQ=60)
                                                TCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCG                                              <  SRR4302540.4706403/94‑1 (MQ=60)
                                                TCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCG                                              >  SRR4302540.6774378/1‑94 (MQ=60)
                                                  ACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTG                                            >  SRR4302540.8660206/1‑94 (MQ=60)
                                                   CGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGT                                           >  SRR4302540.636072/1‑94 (MQ=60)
                                                   CGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGT                                           >  SRR4302540.2480157/1‑94 (MQ=60)
                                                    GTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTA                                          <  SRR4302540.83909/94‑1 (MQ=60)
                                                    GTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTA                                          <  SRR4302540.6603338/94‑1 (MQ=60)
                                                    GTTTAAAATCAGGAACGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTA                                          >  SRR4302540.9416867/1‑94 (MQ=60)
                                                     TTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAA                                         >  SRR4302540.1110794/1‑94 (MQ=60)
                                                     TTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAA                                         >  SRR4302540.2804798/1‑94 (MQ=60)
                                                      TTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAC                                        >  SRR4302540.5197109/1‑94 (MQ=60)
                                                      TTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAC                                        >  SRR4302540.8560808/1‑94 (MQ=60)
                                                      TTAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAAC                                        <  SRR4302540.5644394/94‑1 (MQ=60)
                                                       TAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTCACC                                       >  SRR4302540.8560613/1‑94 (MQ=60)
                                                       TAAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACC                                       >  SRR4302540.1393175/1‑94 (MQ=60)
                                                        AAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCC                                      <  SRR4302540.6643575/94‑1 (MQ=60)
                                                        AAAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCC                                      <  SRR4302540.3685068/94‑1 (MQ=60)
                                                         AAATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCA                                     >  SRR4302540.4857821/1‑94 (MQ=60)
                                                          AATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCAC                                    >  SRR4302540.4795841/1‑94 (MQ=60)
                                                          AATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCAC                                    <  SRR4302540.7980282/94‑1 (MQ=60)
                                                           ATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACA                                   >  SRR4302540.5786201/1‑94 (MQ=60)
                                                           ATCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACA                                   >  SRR4302540.1128093/1‑94 (MQ=60)
                                                            TCAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACAT                                  >  SRR4302540.7525310/1‑94 (MQ=60)
                                                            ACAGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACAT                                  <  SRR4302540.3429228/94‑1 (MQ=60)
                                                              AGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTC                                <  SRR4302540.5953751/94‑1 (MQ=60)
                                                              AGGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTC                                >  SRR4302540.6494054/1‑94 (MQ=60)
                                                               GGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCC                               >  SRR4302540.4340688/1‑94 (MQ=60)
                                                               GGAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCC                               >  SRR4302540.7712561/1‑94 (MQ=60)
                                                                GAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCC                              >  SRR4302540.763601/1‑94 (MQ=60)
                                                                GAATGCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCC                              <  SRR4302540.1700732/94‑1 (MQ=60)
                                                                    GCTGCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTT                          >  SRR4302540.5165360/1‑94 (MQ=60)
                                                                       GCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAA                       <  SRR4302540.3223888/94‑1 (MQ=60)
                                                                       GCTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAA                       >  SRR4302540.7269369/1‑94 (MQ=60)
                                                                        CTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAG                      <  SRR4302540.8918005/94‑1 (MQ=60)
                                                                        CTCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAG                      >  SRR4302540.1185169/1‑94 (MQ=60)
                                                                         TCGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGC                     >  SRR4302540.203189/1‑94 (MQ=60)
                                                                          CGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTCCCCTTCGTGTAACCCACATTCCCTTTTTAAGCC                    >  SRR4302540.9809622/1‑94 (MQ=60)
                                                                          CGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCC                    >  SRR4302540.4194343/1‑94 (MQ=60)
                                                                          CGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCC                    >  SRR4302540.2880166/1‑94 (MQ=60)
                                                                          CGCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCC                    >  SRR4302540.9981460/1‑94 (MQ=60)
                                                                           GCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCA                   >  SRR4302540.2010701/1‑94 (MQ=60)
                                                                           GCAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCA                   <  SRR4302540.8022757/94‑1 (MQ=60)
                                                                            CAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAA                  >  SRR4302540.1123780/1‑94 (MQ=60)
                                                                            CAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAA                  >  SRR4302540.707232/1‑94 (MQ=60)
                                                                            CAAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAA                  >  SRR4302540.893549/1‑94 (MQ=60)
                                                                             AAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAA                 >  SRR4302540.1392648/1‑94 (MQ=60)
                                                                             AAAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAA                 >  SRR4302540.9670872/1‑94 (MQ=60)
                                                                              AAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAG                <  SRR4302540.6102533/94‑1 (MQ=60)
                                                                              AAATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAA                >  SRR4302540.254620/1‑94 (MQ=60)
                                                                               AATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGA               <  SRR4302540.10029064/94‑1 (MQ=60)
                                                                                ATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAA              >  SRR4302540.1097951/1‑94 (MQ=60)
                                                                                ATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAA              >  SRR4302540.8614070/1‑94 (MQ=60)
                                                                                ATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAA              <  SRR4302540.3911247/94‑1 (MQ=60)
                                                                                ATAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAA              >  SRR4302540.5361880/1‑94 (MQ=60)
                                                                                 TAAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAA             <  SRR4302540.2575437/94‑1 (MQ=60)
                                                                                  AAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAAC            >  SRR4302540.2385843/1‑94 (MQ=60)
                                                                                  AAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAAC            <  SRR4302540.9159276/94‑1 (MQ=60)
                                                                                  AAAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAAC            >  SRR4302540.6534778/1‑94 (MQ=60)
                                                                                   AAAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACG           <  SRR4302540.3231353/94‑1 (MQ=60)
                                                                                    AAACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGC          >  SRR4302540.4446003/1‑94 (MQ=60)
                                                                                     AACG‑CCCCATCATTTCTGAAAGAGACGTATAATATGTCCGGCAATATTTACCCTTCGTGTCACCCACATTCCCTTTTTAAGCAAAAGAAACGAG         <  SRR4302540.9057742/94‑1 (MQ=60)
                                                                                      ACG‑CCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGT        <  SRR4302540.9256180/94‑1 (MQ=60)
                                                                                        cgCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTT       <  SRR4302540.7492058/92‑1 (MQ=60)
                                                                                        cgCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTT       <  SRR4302540.9119450/92‑1 (MQ=60)
                                                                                        cgCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTT       <  SRR4302540.8092657/92‑1 (MQ=60)
                                                                                         GCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTT      <  SRR4302540.1821062/94‑1 (MQ=60)
                                                                                           CCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCT    >  SRR4302540.5291070/1‑94 (MQ=60)
                                                                                           CCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCT    >  SRR4302540.1892333/1‑94 (MQ=60)
                                                                                           CCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCT    <  SRR4302540.10053861/94‑1 (MQ=60)
                                                                                            CCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTT   <  SRR4302540.6794867/94‑1 (MQ=60)
                                                                                            CCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTT   >  SRR4302540.783655/1‑94 (MQ=60)
                                                                                             CATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTC  <  SRR4302540.403175/94‑1 (MQ=60)
                                                                                             CATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCATGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTC  <  SRR4302540.4483920/94‑1 (MQ=60)
                                                                                             CATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCATGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTC  <  SRR4302540.4483919/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCCGCGGCGTTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTC  >  NC_000913/2885468‑2885654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑