Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,954,264 A→T D881E (GAT→GAA)  ptr ← protease III

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,954,2640AT99.8% 1430.2 / ‑4.4 395D881E (GAT→GAA) ptrprotease III
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base T (204/190);  total (204/191)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.00e-01

Only 100 of 411 total aligned reads displayed.

CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC  >  NC_000913/2954174‑2954353
                                                                                          |                                                                                         
 tGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCg                                                                                        >  1:6386243/1‑93 (MQ=255)
  gATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCGGCGTTCGa                                                                                       >  2:6972936/1‑93 (MQ=255)
   aTGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaa                                                                                      >  1:7187816/1‑93 (MQ=255)
   aTGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaa                                                                                      >  2:642658/1‑93 (MQ=255)
    tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaaa                                                                                     <  1:2972483/93‑1 (MQ=255)
    tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGaaa                                                                                     <  2:3207165/93‑1 (MQ=255)
      gaagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATc                                                                                   >  2:7855580/1‑93 (MQ=255)
       aagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCt                                                                                  <  1:2277522/93‑1 (MQ=255)
       aagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCt                                                                                  <  2:44356/93‑1 (MQ=255)
        agaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCtt                                                                                 >  2:3711457/1‑93 (MQ=255)
         gaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                <  2:8036853/93‑1 (MQ=255)
         gaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                >  1:7569618/1‑93 (MQ=255)
         aaaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                <  2:8584921/92‑1 (MQ=255)
          aaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               >  1:8840105/1‑93 (MQ=255)
          aaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               <  2:2595250/93‑1 (MQ=255)
          aaaTCAGCAAGTTTGTGCGGCGTCAGCAGTTTTATCTGGGCCACGACTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               >  2:4832195/1‑93 (MQ=255)
           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              >  2:8174629/1‑93 (MQ=255)
           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              >  2:3384601/1‑93 (MQ=255)
           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              <  2:2761175/93‑1 (MQ=255)
             tCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACtt                                                                            >  2:9120630/1‑93 (MQ=255)
              cAGCAAGTTTTTCCCGGCTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTa                                                                           <  2:7120096/93‑1 (MQ=255)
               aGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTaa                                                                          <  1:512529/93‑1 (MQ=255)
               aGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTaa                                                                          <  2:7701584/93‑1 (MQ=255)
                  aaGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACtt                                                                       <  2:724532/93‑1 (MQ=255)
                   aGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTc                                                                      >  1:7255491/1‑93 (MQ=255)
                    gTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCg                                                                     <  1:424200/93‑1 (MQ=255)
                     tttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGa                                                                    <  1:8570791/93‑1 (MQ=255)
                      ttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAt                                                                   <  2:8335725/93‑1 (MQ=255)
                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  1:9871025/93‑1 (MQ=255)
                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  1:8067891/93‑1 (MQ=255)
                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  2:4335184/93‑1 (MQ=255)
                           tggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttc                                                              <  2:9296926/92‑1 (MQ=255)
                           cggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttc                                                              <  2:1343866/93‑1 (MQ=255)
                             gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt                                                            >  2:3486954/1‑93 (MQ=255)
                             gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt                                                            >  1:3969084/1‑93 (MQ=255)
                                  agcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCg                                                       >  1:9124062/1‑93 (MQ=255)
                                   gcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGa                                                      >  1:9757836/1‑93 (MQ=255)
                                      gTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCg                                                   >  2:9345134/1‑93 (MQ=255)
                                       ttttATCTGGGCCACGATTTTGTCACGCGAATCGAAGGGCATATTGCCGCGCTCGCAATCATTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:5634648/1‑93 (MQ=255)
                                       ttttATCTGGGCCACGATTTTATCACGCGAATCGAGGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:1215768/1‑93 (MQ=255)
                                       ttttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:3065622/1‑93 (MQ=255)
                                        tttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGtt                                                 <  2:2313645/93‑1 (MQ=255)
                                        tctATCTGGGCGACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGtt                                                 <  1:9481298/91‑1 (MQ=255)
                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               <  2:4565434/93‑1 (MQ=255)
                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  2:2488570/1‑93 (MQ=255)
                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  1:3728/1‑93 (MQ=255)
                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  1:5906407/1‑93 (MQ=255)
                                           aTCTGGGCCACGATTTTATCACGCGAATCGAAGGGCATATTGCCGCGTTCGAAATCTTGACTTAACTTGCATGCTTATTCGCCGCGCGCTTGc                                              >  1:6945548/1‑93 (MQ=255)
                                           aTCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGc                                              <  1:7878052/93‑1 (MQ=255)
                                            tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCGGAGCGTTTGCg                                             >  1:778628/1‑93 (MQ=255)
                                            tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCg                                             >  2:2111542/1‑93 (MQ=255)
                                                ggCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGc                                         >  1:8303607/1‑93 (MQ=255)
                                                  ccACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCt                                       <  2:1022394/93‑1 (MQ=255)
                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     <  1:4524629/93‑1 (MQ=255)
                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     >  1:9239218/1‑93 (MQ=255)
                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     <  2:8564053/93‑1 (MQ=255)
                                                     cGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgca                                    <  1:3043211/93‑1 (MQ=255)
                                                        ttttATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgcagca                                 >  1:2125578/1‑93 (MQ=255)
                                                          ttATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATc                               <  2:1144831/93‑1 (MQ=255)
                                                           tATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCt                              <  2:9553686/93‑1 (MQ=255)
                                                           tATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCt                              <  1:6087444/93‑1 (MQ=255)
                                                            ttCACGCGGATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  2:2964329/92‑1 (MQ=255)
                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  2:2209349/93‑1 (MQ=255)
                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  1:8228497/93‑1 (MQ=255)
                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             >  2:3965232/1‑93 (MQ=255)
                                                               aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt                          >  1:8752673/1‑93 (MQ=255)
                                                                cgcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTa                         <  2:3612633/93‑1 (MQ=255)
                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        >  1:10040165/1‑93 (MQ=255)
                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        <  1:3425901/93‑1 (MQ=255)
                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        <  1:3467755/93‑1 (MQ=255)
                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        >  2:5991971/1‑93 (MQ=255)
                                                                  cgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt                       <  1:4376457/93‑1 (MQ=255)
                                                                  ccaaTCGAAGCGCATTTTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTGCTTCCCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt                       <  2:8725896/91‑1 (MQ=255)
                                                                    aaTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTa                     >  1:1482776/1‑93 (MQ=255)
                                                                     aTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAc                    <  2:1512689/93‑1 (MQ=255)
                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  2:4145832/1‑93 (MQ=255)
                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  1:1819895/1‑93 (MQ=255)
                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   <  1:617198/93‑1 (MQ=255)
                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  1:2749688/1‑93 (MQ=255)
                                                                        taaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGc                 <  1:9993208/92‑1 (MQ=255)
                                                                         aaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGcc                <  2:1949379/93‑1 (MQ=255)
                                                                         aaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGcc                <  2:5210758/93‑1 (MQ=255)
                                                                           gcgcATATTGCCGCGTGCGAAATCTTTACTTAACTTCGATGCTTCGTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGGAATTACCGCctg              >  2:8977563/1‑93 (MQ=255)
                                                                            cgcATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgc             <  2:283293/93‑1 (MQ=255)
                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  1:8446205/1‑93 (MQ=255)
                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  2:1830412/1‑93 (MQ=255)
                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  1:6673883/1‑93 (MQ=255)
                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGCAATTACCGCctgctg           >  2:5045221/1‑93 (MQ=255)
                                                                               atatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTgg          <  1:3548286/93‑1 (MQ=255)
                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  2:735238/1‑93 (MQ=255)
                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  1:5463183/1‑93 (MQ=255)
                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  1:3163714/1‑93 (MQ=255)
                                                                                 atTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAt        >  1:1249092/1‑93 (MQ=255)
                                                                                  ttGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAtt       >  1:4798875/1‑93 (MQ=255)
                                                                                  ttGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAtt       >  1:531032/1‑93 (MQ=255)
                                                                                    gCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTg     >  2:6547595/1‑93 (MQ=255)
                                                                                      cgcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcg   <  2:6782454/93‑1 (MQ=255)
                                                                                      cgcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcg   >  2:175409/1‑93 (MQ=255)
                                                                                       gcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcgc  >  1:5622490/1‑93 (MQ=255)
                                                                                       gcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcgc  >  1:8031290/1‑93 (MQ=255)
                                                                                          |                                                                                         
CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC  >  NC_000913/2954174‑2954353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 217 total aligned reads displayed.
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  >  NC_000913/2954171‑2954357
                                                                                             |                                                                                             
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGT                                                                                               >  SRR4302540.2255514/1‑94 (MQ=60)
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGT                                                                                               >  SRR4302540.8072418/1‑94 (MQ=60)
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGT                                                                                               >  SRR4302540.1533713/1‑94 (MQ=60)
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGT                                                                                               >  SRR4302540.7567527/1‑94 (MQ=60)
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGT                                                                                               >  SRR4302540.2979120/1‑94 (MQ=60)
 GCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTT                                                                                              <  SRR4302540.2897593/94‑1 (MQ=60)
  CCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC                                                                                             >  SRR4302540.9884014/1‑94 (MQ=60)
  CCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC                                                                                             <  SRR4302540.7796748/94‑1 (MQ=60)
  CCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC                                                                                             >  SRR4302540.8156071/1‑94 (MQ=60)
  CCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC                                                                                             <  SRR4302540.1749479/94‑1 (MQ=60)
  ACTGATGTAAGAAATCAGCAAGTTTTGGCGGCGTCAGCAGTTGTATCTGGGCCACGATTTTCTCACGCGAATCGAAGCGCATATTGCCGCGTTC                                                                                             <  SRR4302540.4263428/94‑1 (MQ=60)
   CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCG                                                                                            >  SRR4302540.870314/1‑94 (MQ=60)
   CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCG                                                                                            >  SRR4302540.2252753/1‑94 (MQ=60)
   CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCG                                                                                            >  SRR4302540.8501670/1‑94 (MQ=60)
   CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCG                                                                                            >  SRR4302540.6457331/1‑94 (MQ=60)
    TGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGA                                                                                           >  SRR4302540.3072431/1‑94 (MQ=60)
    TGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGA                                                                                           >  SRR4302540.2221617/1‑94 (MQ=60)
      ATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAA                                                                                         >  SRR4302540.4007136/1‑94 (MQ=60)
      ATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAA                                                                                         <  SRR4302540.8006314/94‑1 (MQ=60)
      ATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAA                                                                                         >  SRR4302540.2000450/1‑94 (MQ=60)
       TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        <  SRR4302540.1991426/94‑1 (MQ=60)
       TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        >  SRR4302540.4354520/1‑94 (MQ=60)
       TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        <  SRR4302540.619430/94‑1 (MQ=60)
       TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        >  SRR4302540.724109/1‑94 (MQ=60)
       TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        <  SRR4302540.3005327/94‑1 (MQ=60)
       TGGAAGAAATCAGCAAGTTGTTGCGGCCTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT                                                                                        <  SRR4302540.8565607/94‑1 (MQ=60)
        GGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATC                                                                                       >  SRR4302540.447805/1‑94 (MQ=60)
          AAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTT                                                                                     >  SRR4302540.3508870/1‑94 (MQ=60)
          AAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTT                                                                                     <  SRR4302540.2301978/94‑1 (MQ=60)
          AAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTT                                                                                     <  SRR4302540.7904761/94‑1 (MQ=60)
          AAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTT                                                                                     <  SRR4302540.8919294/94‑1 (MQ=60)
           AGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAATTTTTT                                                                                    >  SRR4302540.7654537/1‑94 (MQ=60)
           AGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTT                                                                                    >  SRR4302540.7654536/1‑94 (MQ=60)
            GAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTA                                                                                   <  SRR4302540.9389813/94‑1 (MQ=60)
            GAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTA                                                                                   >  SRR4302540.8942354/1‑94 (MQ=60)
             AAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAC                                                                                  >  SRR4302540.4352041/1‑94 (MQ=60)
             AAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAC                                                                                  >  SRR4302540.5742567/1‑94 (MQ=60)
              AATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCGCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACT                                                                                 <  SRR4302540.5473329/94‑1 (MQ=60)
              AATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACT                                                                                 <  SRR4302540.8380657/94‑1 (MQ=60)
              AATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACT                                                                                 >  SRR4302540.5939715/1‑94 (MQ=60)
                TCAGCAAGTTCTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTA                                                                               <  SRR4302540.3747461/94‑1 (MQ=60)
                 CAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAA                                                                              <  SRR4302540.9959287/94‑1 (MQ=60)
                 CAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAA                                                                              <  SRR4302540.3517767/94‑1 (MQ=60)
                 CAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAA                                                                              >  SRR4302540.5903416/1‑94 (MQ=60)
                  AGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAC                                                                             <  SRR4302540.518032/94‑1 (MQ=60)
                  AGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAC                                                                             <  SRR4302540.4774274/94‑1 (MQ=60)
                   GCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACT                                                                            >  SRR4302540.3131885/1‑94 (MQ=60)
                   GCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACT                                                                            >  SRR4302540.10080735/1‑94 (MQ=60)
                   GCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACT                                                                            <  SRR4302540.7539095/94‑1 (MQ=60)
                   GCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACT                                                                            <  SRR4302540.2781887/94‑1 (MQ=60)
                    CAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTT                                                                           <  SRR4302540.4475334/94‑1 (MQ=60)
                    CAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTT                                                                           <  SRR4302540.935024/94‑1 (MQ=60)
                     AAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTC                                                                          >  SRR4302540.7336450/1‑94 (MQ=60)
                      AGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCG                                                                         <  SRR4302540.7188724/94‑1 (MQ=60)
                      AGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCG                                                                         >  SRR4302540.6852510/1‑94 (MQ=60)
                       GTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGA                                                                        <  SRR4302540.428670/94‑1 (MQ=60)
                        TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCTCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT                                                                       <  SRR4302540.7550614/94‑1 (MQ=60)
                        TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT                                                                       <  SRR4302540.8670362/94‑1 (MQ=60)
                        TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT                                                                       <  SRR4302540.8670363/94‑1 (MQ=60)
                        TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT                                                                       <  SRR4302540.7550902/94‑1 (MQ=60)
                         TTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATG                                                                      >  SRR4302540.6331462/1‑94 (MQ=60)
                         TTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATG                                                                      <  SRR4302540.8030482/94‑1 (MQ=60)
                          TTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGC                                                                     <  SRR4302540.9986311/94‑1 (MQ=60)
                          TTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGC                                                                     <  SRR4302540.824575/94‑1 (MQ=60)
                          TTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGC                                                                     <  SRR4302540.8161504/94‑1 (MQ=60)
                           TTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCT                                                                    <  SRR4302540.1715844/94‑1 (MQ=60)
                           TTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCT                                                                    <  SRR4302540.5582103/94‑1 (MQ=60)
                           TTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCT                                                                    <  SRR4302540.451177/94‑1 (MQ=60)
                              CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT                                                                 <  SRR4302540.9943013/94‑1 (MQ=60)
                              CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT                                                                 <  SRR4302540.9697765/94‑1 (MQ=60)
                              CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT                                                                 <  SRR4302540.9021334/94‑1 (MQ=60)
                              CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT                                                                 <  SRR4302540.6207185/94‑1 (MQ=60)
                               GGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTT                                                                >  SRR4302540.4011871/1‑94 (MQ=60)
                               GGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTT                                                                >  SRR4302540.1223905/1‑94 (MQ=60)
                               GGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTT                                                                <  SRR4302540.5527765/94‑1 (MQ=60)
                                tagcgcttAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC                                                               <  SRR4302540.3056007/86‑1 (MQ=60)
                                gcggtaggaaTTTTATCTGGGCCACGATTGTATCACGCGAATAGAGGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC                                                               <  SRR4302540.6113919/84‑1 (MQ=60)
                                GCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC                                                               <  SRR4302540.61783/94‑1 (MQ=60)
                                 CGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCG                                                              <  SRR4302540.10060575/94‑1 (MQ=60)
                                    CAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCG                                                           >  SRR4302540.9233735/1‑94 (MQ=60)
                                     AGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGA                                                          >  SRR4302540.9872303/1‑94 (MQ=60)
                                      GCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAG                                                         <  SRR4302540.9732190/94‑1 (MQ=60)
                                      GCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAG                                                         <  SRR4302540.3488327/94‑1 (MQ=60)
                                        AGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCG                                                       <  SRR4302540.3470099/94‑1 (MQ=60)
                                         GTTTTATCTGGTCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTATCTTCGATGCTTCTTCGCCGAGCGT                                                      >  SRR4302540.9049739/1‑94 (MQ=60)
                                         GTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGT                                                      >  SRR4302540.1660635/1‑94 (MQ=60)
                                          TTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGCT                                                     >  SRR4302540.5590127/1‑94 (MQ=60)
                                           TTTATCTGGGGCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT                                                    <  SRR4302540.5316497/94‑1 (MQ=60)
                                           TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT                                                    <  SRR4302540.2550052/94‑1 (MQ=60)
                                           TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT                                                    <  SRR4302540.7911754/94‑1 (MQ=60)
                                           TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT                                                    <  SRR4302540.3168984/94‑1 (MQ=60)
                                           TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT                                                    <  SRR4302540.3168983/94‑1 (MQ=60)
                                            TTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCTCCGAGCGTTTG                                                   <  SRR4302540.8668391/94‑1 (MQ=60)
                                            TTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTG                                                   <  SRR4302540.8125081/94‑1 (MQ=60)
                                            TTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTG                                                   >  SRR4302540.3771/1‑94 (MQ=60)
                                            TTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTG                                                   >  SRR4302540.5971659/1‑94 (MQ=60)
                                             TATCTGGGCCACGATTTTATCACGCGAATCGAAGGGCATATTGCCGCGTTCGAAATCTTGACTTAACTTGCATGCTTATTCGCCGCGCGCTTGC                                                  >  SRR4302540.7022853/1‑94 (MQ=60)
                                             TATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGC                                                  <  SRR4302540.356951/94‑1 (MQ=60)
                                             TATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTACTTCGCCGAGCGTTTGC                                                  >  SRR4302540.9398134/1‑94 (MQ=60)
                                              ATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCTCCGAGAGTTTGAG                                                 >  SRR4302540.3356466/1‑94 (MQ=60)
                                              ATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCGGAGCGTTTGCG                                                 >  SRR4302540.786928/1‑94 (MQ=60)
                                              ATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCG                                                 <  SRR4302540.7970061/94‑1 (MQ=60)
                                              ATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCG                                                 >  SRR4302540.3071997/1‑94 (MQ=60)
                                               TCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGG                                                >  SRR4302540.8218761/1‑94 (MQ=60)
                                               TCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGG                                                <  SRR4302540.1308373/94‑1 (MQ=60)
                                                CTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGT                                               <  SRR4302540.6433391/94‑1 (MQ=60)
                                                 TGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTG                                              <  SRR4302540.5434929/94‑1 (MQ=60)
                                                  GGGGCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGC                                             <  SRR4302540.5115357/94‑1 (MQ=60)
                                                  GGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGC                                             >  SRR4302540.8400027/1‑94 (MQ=60)
                                                  GGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGC                                             >  SRR4302540.765601/1‑94 (MQ=60)
                                                    GCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCT                                           <  SRR4302540.903774/94‑1 (MQ=60)
                                                     CCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTG                                          <  SRR4302540.9640895/94‑1 (MQ=60)
                                                     CCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTCCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTG                                          <  SRR4302540.6927506/94‑1 (MQ=60)
                                                      CACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGC                                         >  SRR4302540.9349895/1‑94 (MQ=60)
                                                       ACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCA                                        <  SRR4302540.4573626/94‑1 (MQ=60)
                                                        CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG                                       <  SRR4302540.4394205/94‑1 (MQ=60)
                                                        CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG                                       >  SRR4302540.9898271/1‑94 (MQ=60)
                                                        CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG                                       <  SRR4302540.3076607/94‑1 (MQ=60)
                                                          ATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCA                                     >  SRR4302540.2148384/1‑94 (MQ=60)
                                                          ATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCA                                     >  SRR4302540.6692432/1‑94 (MQ=60)
                                                            TTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATC                                   <  SRR4302540.8024902/94‑1 (MQ=60)
                                                            TTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATC                                   >  SRR4302540.4876672/1‑94 (MQ=60)
                                                            TTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATC                                   <  SRR4302540.7018944/94‑1 (MQ=60)
                                                            TTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATC                                   >  SRR4302540.7277997/1‑94 (MQ=60)
                                                            TTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACCTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATC                                   <  SRR4302540.9264671/94‑1 (MQ=60)
                                                            TGTATCACGCGAAGCCAAGCCCATATTGCCCCGTTCGAAATCTTTAATTAAGTTCGATGCTTCTTCGGCGAGCCTTTGCGGTGCCTGCAGCATC                                   <  SRR4302540.7018945/94‑1 (MQ=48)
                                                             TTATCACGCGAATCGGAGAGCATATTGCCGCGTTCGGAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGGGGTGCCTGCAGCATCT                                  >  SRR4302540.4041930/1‑94 (MQ=60)
                                                             TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGCGCGTCTGCGGTGCCTGCATCATCT                                  >  SRR4302540.664523/1‑94 (MQ=60)
                                                             TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCT                                  >  SRR4302540.5303628/1‑94 (MQ=60)
                                                              TATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTG                                 >  SRR4302540.9269609/1‑94 (MQ=60)
                                                              TATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTG                                 <  SRR4302540.3996788/94‑1 (MQ=60)
                                                              TATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTG                                 <  SRR4302540.6155190/94‑1 (MQ=60)
                                                              TATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGCTGCCTGCAGCATCTG                                 >  SRR4302540.5317863/1‑94 (MQ=60)
                                                              TATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGACGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTG                                 <  SRR4302540.3371406/94‑1 (MQ=60)
                                                               ATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGG                                <  SRR4302540.8324145/94‑1 (MQ=60)
                                                                TCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGG                               <  SRR4302540.694770/94‑1 (MQ=60)
                                                                 CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT                              >  SRR4302540.5094079/1‑94 (MQ=60)
                                                                 CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT                              >  SRR4302540.8854216/1‑94 (MQ=60)
                                                                 CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT                              <  SRR4302540.8349911/94‑1 (MQ=60)
                                                                  ACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTA                             <  SRR4302540.3949497/94‑1 (MQ=60)
                                                                   CGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAA                            >  SRR4302540.10156908/1‑94 (MQ=60)
                                                                   CGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAA                            <  SRR4302540.9279891/94‑1 (MQ=60)
                                                                   CGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAA                            <  SRR4302540.6142180/94‑1 (MQ=60)
                                                                    GCGAATCGAAGCGCATATTGCCTCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAT                           <  SRR4302540.2017454/94‑1 (MQ=60)
                                                                    GCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAT                           <  SRR4302540.3463140/94‑1 (MQ=60)
                                                                    GCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAT                           <  SRR4302540.1249133/94‑1 (MQ=60)
                                                                    GCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAT                           <  SRR4302540.3505509/94‑1 (MQ=60)
                                                                     CGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATT                          >  SRR4302540.7912888/1‑94 (MQ=60)
                                                                     CGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATT                          <  SRR4302540.4423978/94‑1 (MQ=60)
                                                                      GAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTA                         >  SRR4302540.1499049/1‑94 (MQ=60)
                                                                       AATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAC                        >  SRR4302540.3199181/1‑94 (MQ=60)
                                                                       AATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAC                        <  SRR4302540.3467728/94‑1 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       <  SRR4302540.4058729/94‑1 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       >  SRR4302540.1839778/1‑94 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       <  SRR4302540.1749123/94‑1 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       >  SRR4302540.827526/1‑94 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       >  SRR4302540.2779400/1‑94 (MQ=60)
                                                                        ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC                       <  SRR4302540.4058730/94‑1 (MQ=60)
                                                                         TCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCG                      >  SRR4302540.4857701/1‑94 (MQ=60)
                                                                         TCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCG                      <  SRR4302540.623779/94‑1 (MQ=60)
                                                                           TAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCC                    <  SRR4302540.10109670/94‑1 (MQ=60)
                                                                           GAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCGTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCC                    <  SRR4302540.1138937/94‑1 (MQ=60)
                                                                            AAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCT                   <  SRR4302540.710102/94‑1 (MQ=60)
                                                                             AGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTT                  >  SRR4302540.8689170/1‑94 (MQ=60)
                                                                               CGCATATTTCCCCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCT                <  SRR4302540.2794092/94‑1 (MQ=60)
                                                                                GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG               >  SRR4302540.6747616/1‑94 (MQ=60)
                                                                                GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG               <  SRR4302540.4798254/94‑1 (MQ=60)
                                                                                GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG               <  SRR4302540.8412949/94‑1 (MQ=60)
                                                                                GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG               >  SRR4302540.3758605/1‑94 (MQ=60)
                                                                                GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG               >  SRR4302540.8544251/1‑94 (MQ=60)
                                                                                  ATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGA             >  SRR4302540.5523318/1‑94 (MQ=60)
                                                                                  ATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGA             >  SRR4302540.3198126/1‑94 (MQ=60)
                                                                                  ATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGA             <  SRR4302540.3587046/94‑1 (MQ=60)
                                                                                  ATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTCGA             >  SRR4302540.8393805/1‑94 (MQ=60)
                                                                                   TATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAT            >  SRR4302540.1261848/1‑94 (MQ=60)
                                                                                   TATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAT            >  SRR4302540.1261849/1‑94 (MQ=60)
                                                                                   TATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAT            >  SRR4302540.2354596/1‑94 (MQ=60)
                                                                                    ATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATT           >  SRR4302540.7300720/1‑94 (MQ=60)
                                                                                    ATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATT           >  SRR4302540.536772/1‑94 (MQ=60)
                                                                                    ATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATT           >  SRR4302540.4850233/1‑94 (MQ=60)
                                                                                    ATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATT           >  SRR4302540.8346656/1‑94 (MQ=60)
                                                                                    ATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATT           >  SRR4302540.7332241/1‑94 (MQ=60)
                                                                                     TTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTT          <  SRR4302540.8892124/94‑1 (MQ=60)
                                                                                     TTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTT          >  SRR4302540.2581285/1‑94 (MQ=60)
                                                                                     TTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTT          <  SRR4302540.6450739/94‑1 (MQ=60)
                                                                                      TGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTG         >  SRR4302540.8754158/1‑94 (MQ=60)
                                                                                      TGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTG         >  SRR4302540.6110805/1‑94 (MQ=60)
                                                                                         CGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC      >  SRR4302540.8124660/1‑94 (MQ=60)
                                                                                         CGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC      >  SRR4302540.5684353/1‑94 (MQ=60)
                                                                                          GCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCA     >  SRR4302540.9959574/1‑94 (MQ=60)
                                                                                           CGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAA    >  SRR4302540.5969752/1‑94 (MQ=60)
                                                                                           CGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAA    >  SRR4302540.1342232/1‑94 (MQ=60)
                                                                                           CGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAA    <  SRR4302540.572114/94‑1 (MQ=60)
                                                                                            GTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAA   >  SRR4302540.4810470/1‑94 (MQ=60)
                                                                                            GTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAA   >  SRR4302540.3908264/1‑94 (MQ=60)
                                                                                            GTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAA   >  SRR4302540.9983730/1‑94 (MQ=60)
                                                                                             TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  <  SRR4302540.2812598/94‑1 (MQ=60)
                                                                                             TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  >  SRR4302540.169914/1‑94 (MQ=60)
                                                                                             TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  <  SRR4302540.10086714/94‑1 (MQ=60)
                                                                                             TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  <  SRR4302540.248349/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC  >  NC_000913/2954171‑2954357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑