Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,998,290 +G coding (379/486 nt) b4566 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,998,2891.G99.8% 1570.2 / ‑4.6 484coding (380/486 nt)b4566hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base G (214/269);  total (215/269)
Fisher's exact test for biased strand distribution p-value = 4.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 547 total aligned reads displayed.

GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT  >  NC_000913/3998197‑3998376
                                                                                             |                                                                                       
taCTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                          <  1:7888398/92‑1 (MQ=255)
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                          >  2:8788914/1‑93 (MQ=255)
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                          >  2:7949676/1‑93 (MQ=255)
   tGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGTCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gga                                                                                      >  1:373925/1‑91 (MQ=255)
   tGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggc                                                                                      >  1:2415082/1‑91 (MQ=255)
   tGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gga                                                                                      >  2:196016/1‑91 (MQ=255)
   tGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gga                                                                                      <  2:1149526/93‑3 (MQ=255)
    gCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggac                                                                                     <  1:4623732/93‑4 (MQ=255)
    gCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggac                                                                                     <  2:2340789/93‑4 (MQ=255)
     cACCTCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggacg                                                                                    <  1:4656548/93‑5 (MQ=255)
       cctgaaaCTGAAGCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGa                                                                                   <  2:7100979/89‑1 (MQ=255)
        cGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAt                                                                                  >  1:6727748/1‑93 (MQ=255)
        cGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAt                                                                                  <  2:7878886/93‑1 (MQ=255)
            aaCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAg                                                                              <  2:1570459/93‑1 (MQ=255)
             aCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGa                                                                             >  1:547534/1‑93 (MQ=255)
              cTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGaa                                                                            >  2:8071935/1‑93 (MQ=255)
               tGAATCTCTTGACTGGTTTTGAGGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGaaa                                                                           <  2:3965239/93‑1 (MQ=255)
                gAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAt                                                                          <  1:4969114/93‑1 (MQ=255)
                 aaTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAtt                                                                         >  1:6094218/1‑93 (MQ=255)
                  aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTc                                                                        >  1:6523229/1‑93 (MQ=255)
                   tctcTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTcc                                                                       >  1:1724848/1‑93 (MQ=255)
                     tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt                                                                     <  1:76286/93‑1 (MQ=255)
                     tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt                                                                     <  1:1298393/93‑1 (MQ=255)
                      ctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAGGAAATTCCCtt                                                                    >  1:6916198/1‑93 (MQ=255)
                      ctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCtt                                                                    <  2:4119416/93‑1 (MQ=255)
                      ctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTACCTCCCGCGACATAAACCACGCCGCCAGGACGGATAAAGAAATTCCCtt                                                                    <  2:5661495/93‑1 (MQ=255)
                       tttACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTc                                                                   >  2:8292264/1‑93 (MQ=255)
                       tttACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTc                                                                   >  2:5873967/1‑93 (MQ=255)
                          aCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCAcc                                                                <  1:4281113/93‑1 (MQ=255)
                           cTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCt                                                               >  1:3179363/1‑93 (MQ=255)
                            tGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGTCGCCAGGACGGATAAAGAAATTCCCTTCACCTg                                                              >  1:9669355/1‑93 (MQ=255)
                              gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGaa                                                            <  2:10020943/93‑1 (MQ=255)
                               ttttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAg                                                           >  1:4386191/1‑93 (MQ=255)
                               ttttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAg                                                           <  1:2852141/93‑1 (MQ=255)
                                tttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGCAGc                                                          >  1:7460180/1‑93 (MQ=255)
                                tttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGc                                                          <  2:9589429/93‑1 (MQ=255)
                                 ttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCg                                                         <  2:7468767/93‑1 (MQ=255)
                                  tGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCga                                                        <  1:7233629/93‑1 (MQ=255)
                                  tGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCga                                                        >  1:10037022/1‑93 (MQ=255)
                                  tGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCga                                                        >  2:6103544/1‑93 (MQ=255)
                                   gAAGGCATCCAGGAGAACGATGCCGACTTTATCTCACGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCgag                                                       <  2:7731047/93‑1 (MQ=255)
                                   gAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCgag                                                       <  1:2266646/93‑1 (MQ=255)
                                    aaGGCACCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCgaga                                                      <  2:3841392/93‑1 (MQ=255)
                                     aGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAt                                                     <  1:4886426/93‑1 (MQ=255)
                                      ggCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAtt                                                    <  2:9324796/93‑1 (MQ=255)
                                       gCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAttt                                                   <  2:2652213/93‑1 (MQ=255)
                                         acccAGACAAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCGGAAGCGAGATTTaa                                                 <  2:1894453/91‑1 (MQ=255)
                                         aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  2:3381207/93‑1 (MQ=255)
                                         aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  2:3234782/93‑1 (MQ=255)
                                         aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  2:6541286/93‑1 (MQ=255)
                                         aTCCAGAAAAACGATGCCGACTTAATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  2:9232303/93‑1 (MQ=255)
                                          tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc                                                >  1:3942700/1‑93 (MQ=255)
                                            cAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGc                                              >  1:3561393/1‑93 (MQ=255)
                                             aGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGcc                                             >  2:8650096/1‑93 (MQ=255)
                                             aGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGcc                                             >  1:2630066/1‑93 (MQ=255)
                                             aGACGAACGATGCCGACTTTATCCCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGcc                                             >  2:3613333/1‑93 (MQ=255)
                                              gACGAACGATGCCGCCTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGccc                                            >  2:6919533/1‑92 (MQ=255)
                                              gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa                                            >  1:1535769/1‑93 (MQ=255)
                                               acgaacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAc                                           <  1:6033409/93‑1 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       <  1:9853980/93‑1 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       <  2:2859739/93‑1 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       <  1:994301/93‑1 (MQ=255)
                                                    cgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTct                                      <  2:8155219/93‑1 (MQ=255)
                                                       tGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgct                                   >  1:8235753/1‑93 (MQ=255)
                                                         ccGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGa                                 <  1:9192005/93‑1 (MQ=255)
                                                         ccGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGa                                 <  2:4325358/93‑1 (MQ=255)
                                                          cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc                                >  2:2195210/1‑93 (MQ=255)
                                                          cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc                                <  2:3474853/93‑1 (MQ=255)
                                                           gACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAcc                               >  1:9100289/1‑93 (MQ=255)
                                                           caCTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAcc                               <  1:3415482/92‑1 (MQ=255)
                                                           caCTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAcc                               <  1:6812871/92‑1 (MQ=255)
                                                               ttATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGttt                           >  1:8456568/1‑93 (MQ=255)
                                                                 aTCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGttttg                         >  2:7250028/1‑92 (MQ=255)
                                                                 aTCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTc                         >  2:3747421/1‑93 (MQ=255)
                                                                 aTCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTc                         <  2:5229855/93‑1 (MQ=255)
                                                                  tctcCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCg                        >  1:5621731/1‑93 (MQ=255)
                                                                   ctcCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGa                       <  2:6255985/93‑1 (MQ=255)
                                                                    tcCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAt                      >  1:8820876/1‑93 (MQ=255)
                                                                     cccGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATg                     <  2:5479999/93‑1 (MQ=255)
                                                                     cccGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATg                     <  1:9461922/93‑1 (MQ=255)
                                                                      ccGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGt                    >  1:7356825/1‑93 (MQ=255)
                                                                      ccGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGt                    <  1:9363143/93‑1 (MQ=255)
                                                                       cgcgACATAAAACACGGCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTa                   <  1:186172/93‑1 (MQ=255)
                                                                         cgACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACa                 <  2:6736835/93‑1 (MQ=255)
                                                                         cgACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACa                 >  1:414112/1‑93 (MQ=255)
                                                                          gACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGCTTTCGATGTACaa                >  2:4926892/1‑93 (MQ=255)
                                                                           aCATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaaa               <  1:2143513/93‑1 (MQ=255)
                                                                             aTAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAcc             <  1:2987969/93‑1 (MQ=255)
                                                                              tAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg            >  2:9099357/1‑93 (MQ=255)
                                                                              tAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg            >  1:5953390/1‑93 (MQ=255)
                                                                               aaaaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           >  2:4536225/1‑93 (MQ=255)
                                                                               aaaaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           <  1:5261407/93‑1 (MQ=255)
                                                                                 aaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgc         <  2:9780986/93‑1 (MQ=255)
                                                                                  acgcgccgcCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACACACCGAgcg        >  1:8425414/4‑93 (MQ=255)
                                                                                  acacGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcg        >  2:1344132/1‑93 (MQ=255)
                                                                                   cacGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcgg       <  2:2412741/93‑1 (MQ=255)
                                                                                    acGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcggc      >  1:6241633/1‑93 (MQ=255)
                                                                                      gccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGgcgc    >  1:8698017/1‑93 (MQ=255)
                                                                                       ccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCa   >  1:1651197/1‑93 (MQ=255)
                                                                                        cgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAt  <  2:4722101/93‑1 (MQ=255)
                                                                                             |                                                                                       
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT  >  NC_000913/3998197‑3998376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 304 total aligned reads displayed.
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  >  NC_000913/3998197‑3998382
                                                                                              |                                                                                              
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                                <  SRR4302540.854275/94‑1 (MQ=60)
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                                <  SRR4302540.5858101/94‑1 (MQ=60)
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                                >  SRR4302540.4084625/1‑94 (MQ=60)
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                                <  SRR4302540.1677851/94‑1 (MQ=60)
GACGGCCCCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCAAGACGAACGATGCCGCCTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                                <  SRR4302540.7372793/94‑1 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGTCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Gga                                                                                              >  SRR4302540.377795/1‑92 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Gga                                                                                              <  SRR4302540.681142/94‑3 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Gga                                                                                              >  SRR4302540.2770509/1‑92 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Gga                                                                                              <  SRR4302540.9900478/94‑3 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Gga                                                                                              <  SRR4302540.3572807/94‑3 (MQ=60)
  CTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G‑GC                                                                                             >  SRR4302540.2441111/1‑94 (MQ=60)
   TGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggac                                                                                             >  SRR4302540.9649924/1‑91 (MQ=60)
   TGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggac                                                                                             >  SRR4302540.4542094/1‑91 (MQ=60)
    GCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCGGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑G                                                                                           <  SRR4302540.3715595/94‑1 (MQ=60)
    GCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑G                                                                                           <  SRR4302540.8784765/94‑1 (MQ=60)
    GCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑G                                                                                           <  SRR4302540.3715594/94‑1 (MQ=60)
     CACCTCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GG                                                                                          <  SRR4302540.4706386/94‑1 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GG                                                                                          >  SRR4302540.3910081/1‑94 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GG                                                                                          <  SRR4302540.1816251/94‑1 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGACGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GG                                                                                          >  SRR4302540.3910080/1‑94 (MQ=60)
      ACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGA                                                                                         >  SRR4302540.3084187/1‑94 (MQ=60)
      ACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGA                                                                                         >  SRR4302540.6900419/1‑94 (MQ=60)
      ACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGA                                                                                         >  SRR4302540.100195/1‑94 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCGTCCAGACGAACGATGCCGACTTTATATCCCGCGACATAAAACACCCCGCCA‑GCAC‑GGAT                                                                                        >  SRR4302540.6042403/1‑94 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGAT                                                                                        >  SRR4302540.6802024/1‑94 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGAT                                                                                        <  SRR4302540.6080211/94‑1 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGAT                                                                                        >  SRR4302540.6042404/1‑94 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATA                                                                                       <  SRR4302540.9301067/94‑1 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATA                                                                                       <  SRR4302540.6843939/94‑1 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATA                                                                                       >  SRR4302540.7304797/1‑94 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATA                                                                                       >  SRR4302540.238494/1‑94 (MQ=60)
         GCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAA                                                                                      <  SRR4302540.9404175/94‑1 (MQ=60)
         GCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAA                                                                                      <  SRR4302540.5996519/94‑1 (MQ=60)
          CAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGACCGATGCCGACGTTATCCCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAA                                                                                     <  SRR4302540.7939673/94‑1 (MQ=60)
           AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAG                                                                                    <  SRR4302540.2218389/94‑1 (MQ=60)
           AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAG                                                                                    >  SRR4302540.7702531/1‑94 (MQ=60)
            AACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGA                                                                                   <  SRR4302540.9537834/94‑1 (MQ=60)
             ACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAA                                                                                  <  SRR4302540.8630757/94‑1 (MQ=60)
             ACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAA                                                                                  <  SRR4302540.8433445/94‑1 (MQ=60)
              CTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAA                                                                                 >  SRR4302540.9237457/1‑94 (MQ=60)
              CTGAATCTCTTTACTGCTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAA                                                                                 <  SRR4302540.6106977/94‑1 (MQ=60)
                GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATT                                                                               >  SRR4302540.6162048/1‑94 (MQ=60)
                GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATT                                                                               <  SRR4302540.5022878/94‑1 (MQ=60)
                GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATT                                                                               >  SRR4302540.5573629/1‑94 (MQ=60)
                 AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTC                                                                              >  SRR4302540.6595678/1‑94 (MQ=60)
                 AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTC                                                                              <  SRR4302540.2275767/94‑1 (MQ=60)
                 AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTC                                                                              >  SRR4302540.10078371/1‑94 (MQ=60)
                  ATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCC                                                                             >  SRR4302540.1743463/1‑94 (MQ=60)
                  ATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCC                                                                             >  SRR4302540.2508145/1‑94 (MQ=60)
                   TCTCTTTTCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCC                                                                            <  SRR4302540.2202641/94‑1 (MQ=60)
                   TCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCC                                                                            <  SRR4302540.2239110/94‑1 (MQ=60)
                     TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAGGAAATTCCCTT                                                                          >  SRR4302540.6993155/1‑94 (MQ=60)
                     TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTT                                                                          <  SRR4302540.1311852/94‑1 (MQ=60)
                      CTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTC                                                                         >  SRR4302540.733041/1‑94 (MQ=60)
                      CTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTC                                                                         >  SRR4302540.8941777/1‑94 (MQ=60)
                        TTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCAC                                                                       <  SRR4302540.6590946/94‑1 (MQ=60)
                         TACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACC                                                                      <  SRR4302540.4700341/94‑1 (MQ=60)
                          TCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCT                                                                     <  SRR4302540.467517/94‑1 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCT                                                                     <  SRR4302540.9470505/94‑1 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCT                                                                     <  SRR4302540.2978543/94‑1 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCT                                                                     <  SRR4302540.3765300/94‑1 (MQ=60)
                          ACTGGTTTGGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCT                                                                     <  SRR4302540.467515/94‑1 (MQ=60)
                           CTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGTCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTG                                                                    >  SRR4302540.9783157/1‑94 (MQ=60)
                           CTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTG                                                                    >  SRR4302540.697904/1‑94 (MQ=60)
                           CTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTG                                                                    <  SRR4302540.4914498/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  <  SRR4302540.8484590/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  >  SRR4302540.4949195/1‑94 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  <  SRR4302540.1497498/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  <  SRR4302540.9177487/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  >  SRR4302540.7904846/1‑94 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAA                                                                  <  SRR4302540.4336216/94‑1 (MQ=60)
                              GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAG                                                                 <  SRR4302540.4999236/94‑1 (MQ=60)
                              GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAG                                                                 >  SRR4302540.4433808/1‑94 (MQ=60)
                              GTTGTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTACCTTCACCTGAAG                                                                 <  SRR4302540.1699997/94‑1 (MQ=60)
                              GTATTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAG                                                                 <  SRR4302540.3258144/94‑1 (MQ=60)
                               TTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGCAGC                                                                >  SRR4302540.7543365/1‑94 (MQ=60)
                               GTTTGAAGGCATCCAGACGAACGATGCCGACTTTACCGCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGC                                                                <  SRR4302540.5418406/94‑1 (MQ=60)
                                TTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCG                                                               <  SRR4302540.1926078/94‑1 (MQ=60)
                                TTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCG                                                               <  SRR4302540.752174/94‑1 (MQ=60)
                                  TGAAGGCCTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAG                                                             <  SRR4302540.105206/94‑1 (MQ=60)
                                  TGAAGGCATCCAGACGCCCGATCCCTACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAG                                                             <  SRR4302540.10050030/94‑1 (MQ=60)
                                  TGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAG                                                             <  SRR4302540.3465344/94‑1 (MQ=60)
                                    AAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGAT                                                           <  SRR4302540.3962604/94‑1 (MQ=60)
                                     AGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATT                                                          <  SRR4302540.2936849/94‑1 (MQ=60)
                                       GCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTA                                                        <  SRR4302540.4259541/94‑1 (MQ=60)
                                       GCATCCAGACGAACGATGCCGACTTTACCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTA                                                        <  SRR4302540.5554765/94‑1 (MQ=60)
                                       GCATCCAGACGAACGATGCCGACTTGATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTA                                                        <  SRR4302540.9421620/94‑1 (MQ=60)
                                        CATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAA                                                       >  SRR4302540.2994701/1‑94 (MQ=60)
                                        CATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAA                                                       <  SRR4302540.4568274/94‑1 (MQ=60)
                                         CTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      <  SRR4302540.241844/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      >  SRR4302540.3377181/1‑94 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      <  SRR4302540.5914708/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      <  SRR4302540.9537140/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      >  SRR4302540.7767870/1‑94 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                      >  SRR4302540.3985287/1‑94 (MQ=60)
                                          TCCAGACGAACGATGCCGACTTTATCACCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACG                                                     <  SRR4302540.6222247/94‑1 (MQ=60)
                                           CCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGC                                                    >  SRR4302540.4857143/1‑94 (MQ=60)
                                           CCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGC                                                    >  SRR4302540.3600300/1‑94 (MQ=60)
                                           CCAGACGAACGATGCCGACTTCATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGAGAGATTTAACGC                                                    >  SRR4302540.4856868/1‑94 (MQ=60)
                                            CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC                                                   >  SRR4302540.6694737/1‑94 (MQ=60)
                                            CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC                                                   >  SRR4302540.2658532/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                  >  SRR4302540.1259833/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                  <  SRR4302540.2128221/94‑1 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                  >  SRR4302540.8529503/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                  >  SRR4302540.1552757/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                  >  SRR4302540.1871265/1‑94 (MQ=60)
                                              GACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAC                                                 <  SRR4302540.688956/94‑1 (MQ=60)
                                              GACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAC                                                 <  SRR4302540.7307483/94‑1 (MQ=60)
                                               ACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACC                                                <  SRR4302540.6100372/94‑1 (MQ=60)
                                                CGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCT                                               <  SRR4302540.3062987/94‑1 (MQ=60)
                                                CGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCT                                               <  SRR4302540.4256001/94‑1 (MQ=60)
                                                CGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCAGTCA‑G‑GCGGGATACAGAAATTGCCTTCACCTGAAGGGAGATTTAGCGCGACCT                                               >  SRR4302540.9543119/1‑94 (MQ=48)
                                                 GAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTT                                              >  SRR4302540.2226536/1‑94 (MQ=60)
                                                 GAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTT                                              >  SRR4302540.5541768/1‑94 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            <  SRR4302540.5152130/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            <  SRR4302540.8619296/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            <  SRR4302540.9969139/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            <  SRR4302540.8368594/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            >  SRR4302540.160663/1‑94 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                            <  SRR4302540.547001/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTAT                                            <  SRR4302540.1753080/94‑1 (MQ=60)
                                                    CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG                                           >  SRR4302540.6114329/1‑94 (MQ=60)
                                                    CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG                                           <  SRR4302540.7616627/94‑1 (MQ=60)
                                                     GATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGC                                          >  SRR4302540.7468563/1‑94 (MQ=60)
                                                     GATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGC                                          <  SRR4302540.2745355/94‑1 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                         >  SRR4302540.6871319/1‑94 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                         <  SRR4302540.1578517/94‑1 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                         >  SRR4302540.8331477/1‑94 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                         >  SRR4302540.9658118/1‑94 (MQ=60)
                                                         CCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAC                                      <  SRR4302540.9302252/94‑1 (MQ=60)
                                                         CCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAC                                      >  SRR4302540.4413221/1‑94 (MQ=60)
                                                          CGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC                                     <  SRR4302540.9219557/94‑1 (MQ=60)
                                                          CGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC                                     <  SRR4302540.400956/94‑1 (MQ=60)
                                                          CGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC                                     >  SRR4302540.4387018/1‑94 (MQ=60)
                                                            ACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGT                                   >  SRR4302540.6255949/1‑94 (MQ=60)
                                                            ACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGT                                   <  SRR4302540.6614142/94‑1 (MQ=60)
                                                             CTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTT                                  >  SRR4302540.7115330/1‑94 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 <  SRR4302540.1454009/94‑1 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 <  SRR4302540.6364605/94‑1 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 <  SRR4302540.3356791/94‑1 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 <  SRR4302540.4518969/94‑1 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 <  SRR4302540.5246879/94‑1 (MQ=60)
                                                              TTTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTT                                 >  SRR4302540.8554761/1‑94 (MQ=60)
                                                               TTATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTT                                >  SRR4302540.10105542/1‑94 (MQ=60)
                                                                 ATCTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCG                              >  SRR4302540.6200574/1‑94 (MQ=60)
                                                                   CTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAT                            >  SRR4302540.8824642/1‑94 (MQ=60)
                                                                   CTCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAT                            <  SRR4302540.7467332/94‑1 (MQ=60)
                                                                    TCCCGCGACATAACACACGCCGCCAGG‑AC‑GGATGAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGTTG                           <  SRR4302540.9047375/94‑1 (MQ=60)
                                                                    CCCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATG                           <  SRR4302540.28987/94‑1 (MQ=60)
                                                                     CCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGT                          >  SRR4302540.7438867/1‑94 (MQ=60)
                                                                     CCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGT                          <  SRR4302540.9574188/94‑1 (MQ=60)
                                                                     CCCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCGGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGT                          <  SRR4302540.2495064/94‑1 (MQ=60)
                                                                      CCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTA                         <  SRR4302540.9474639/94‑1 (MQ=60)
                                                                      CCGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTA                         <  SRR4302540.9703985/94‑1 (MQ=60)
                                                                       CGCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTAC                        <  SRR4302540.7746075/94‑1 (MQ=60)
                                                                        GCGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACA                       >  SRR4302540.418449/1‑94 (MQ=60)
                                                                         CGACATAAAACACGCCGCCAGG‑CC‑GGCTAAAGAAATTCACTTCACCTGCAGCGTGATTTAACCACCCCTCGTGCTGACCGTTTTAGATGTACAA                      >  SRR4302540.8053585/1‑94 (MQ=18)
                                                                         CGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTAgca                      >  SRR4302540.8053584/1‑91 (MQ=60)
                                                                         CGACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAA                      <  SRR4302540.1863088/94‑1 (MQ=60)
                                                                          GACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAA                     <  SRR4302540.501714/94‑1 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                    >  SRR4302540.4284357/1‑94 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                    <  SRR4302540.3400839/94‑1 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                    <  SRR4302540.8795700/94‑1 (MQ=60)
                                                                            CATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC                   <  SRR4302540.8908916/94‑1 (MQ=60)
                                                                            CATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC                   >  SRR4302540.6627411/1‑94 (MQ=60)
                                                                            CATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC                   <  SRR4302540.1620484/94‑1 (MQ=60)
                                                                             ATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                  >  SRR4302540.7431374/1‑94 (MQ=60)
                                                                             ATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                  >  SRR4302540.6019232/1‑94 (MQ=60)
                                                                             ATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                  <  SRR4302540.99047/94‑1 (MQ=60)
                                                                             ATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                  <  SRR4302540.4615254/94‑1 (MQ=60)
                                                                             ATAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                  >  SRR4302540.8943061/1‑94 (MQ=60)
                                                                              TAAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGA                 >  SRR4302540.10030684/1‑94 (MQ=60)
                                                                               AAAACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAG                <  SRR4302540.5318808/94‑1 (MQ=60)
                                                                                AAACACGCCGCCAGG‑AC‑GGATAAAGAATTTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGC               <  SRR4302540.1067551/94‑1 (MQ=60)
                                                                                 AACGCGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACACACCGAGCG              >  SRR4302540.8523216/1‑94 (MQ=60)
                                                                                 AACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG              >  SRR4302540.2377087/1‑94 (MQ=60)
                                                                                 AACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG              >  SRR4302540.3932304/1‑94 (MQ=60)
                                                                                  ACACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGG             <  SRR4302540.5382822/94‑1 (MQ=60)
                                                                                   CACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGC            <  SRR4302540.10114039/94‑1 (MQ=60)
                                                                                   CACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGC            >  SRR4302540.6311096/1‑94 (MQ=60)
                                                                                   CACGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGC            >  SRR4302540.5660268/1‑94 (MQ=60)
                                                                                    CCGCCGCCAGG‑AC‑GGATAAACAAATTCCCTTCACCTGAAGCGAGATTTAACGCCCCCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCG           <  SRR4302540.2608638/94‑1 (MQ=60)
                                                                                     CGCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGC          >  SRR4302540.8798986/1‑94 (MQ=60)
                                                                                      GCCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCA         >  SRR4302540.1669201/1‑94 (MQ=60)
                                                                                       CCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT        <  SRR4302540.2005535/94‑1 (MQ=60)
                                                                                       CCGCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT        <  SRR4302540.3507292/94‑1 (MQ=60)
                                                                                         GCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG      >  SRR4302540.2846660/1‑94 (MQ=60)
                                                                                         GCCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG      <  SRR4302540.8240201/94‑1 (MQ=60)
                                                                                          CCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGC     >  SRR4302540.3038541/1‑94 (MQ=60)
                                                                                          CCAGG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGC     <  SRR4302540.822293/94‑1 (MQ=60)
                                                                                           cagG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT    >  SRR4302540.8856642/4‑94 (MQ=60)
                                                                                           cagG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT    <  SRR4302540.4228219/91‑1 (MQ=60)
                                                                                            agG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTT   >  SRR4302540.2280991/3‑94 (MQ=60)
                                                                                            agG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTT   >  SRR4302540.2872382/3‑94 (MQ=60)
                                                                                            agG‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGAGTTAACGCCACCTTCTGCTGCCCGCGTTCGATGTCGAAACCGAGCAGCGCATggcgt   >  SRR4302540.5170766/3‑89 (MQ=60)
                                                                                            G‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  >  SRR4302540.7665035/1‑94 (MQ=60)
                                                                                            G‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  <  SRR4302540.4129057/94‑1 (MQ=60)
                                                                                            G‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  <  SRR4302540.4886646/94‑1 (MQ=60)
                                                                                            G‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  >  SRR4302540.7071219/1‑94 (MQ=60)
                                                                                            G‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  >  SRR4302540.8315928/1‑94 (MQ=60)
                                                                                              |                                                                                              
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G‑AC‑GGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT  >  NC_000913/3998197‑3998382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑