Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,019,057	A→G	V415V (GTA→GTG)	yigR →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,019,057	0	A	G	99.6%	1546.8 / ‑4.0	489	V415V (GTA→GTG)	yigR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (248/239); total (249/240)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01

Only 100 of 512 total aligned reads displayed.

AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC  >  NC_000913/4018967‑4019146

 aaTCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGa                                                                                        >  1:9900963/1‑93 (MQ=255)

 aaTCTGTTTAATACGGCGCGTAGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGa                                                                                        >  1:5614636/1‑93 (MQ=255)

     tGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    >  2:414066/1‑93 (MQ=255)

     tGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    >  2:2838937/1‑93 (MQ=255)

     tGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    <  1:9759033/93‑1 (MQ=255)

       tttAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAg                                                                                  >  1:5454841/1‑93 (MQ=255)

           aTACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGACGCCAGCttt                                                                              >  2:7322605/1‑93 (MQ=255)

            tACGGCGCGTCGCTTCAATATGGAAGGGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGGCGCCAGGTTTa                                                                             >  1:2160001/1‑93 (MQ=255)

              cGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATc                                                                           <  2:6645358/93‑1 (MQ=255)

              cGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATc                                                                           <  2:1566893/93‑1 (MQ=255)

              cGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATc                                                                           <  1:7814624/93‑1 (MQ=255)

              aggCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATc                                                                           <  1:2456159/92‑1 (MQ=255)

                 cgcgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGc                                                                        <  1:1641833/93‑1 (MQ=255)

                 cgcgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGc                                                                        >  2:3728070/1‑93 (MQ=255)

                  gcgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCa                                                                       >  1:4815213/1‑93 (MQ=255)

                  gcgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCa                                                                       >  1:2595685/1‑93 (MQ=255)

                   cgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCaa                                                                      >  2:9242027/1‑93 (MQ=255)

                   cgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCaa                                                                      >  1:4099113/1‑93 (MQ=255)

                     tCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACt                                                                    >  1:469596/1‑93 (MQ=255)

                     tCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACt                                                                    <  2:5247231/93‑1 (MQ=255)

                      cGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTc                                                                   <  1:10016683/93‑1 (MQ=255)

                       gCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCg                                                                  >  1:2779492/1‑93 (MQ=255)

                         ttCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAt                                                                >  1:5939886/1‑93 (MQ=255)

                          tCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAtt                                                               >  2:8434083/1‑93 (MQ=255)

                            aaTATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTa                                                             <  1:3016282/93‑1 (MQ=255)

                            aaTATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTa                                                             <  2:2025077/93‑1 (MQ=255)

                            aaTATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTa                                                             >  2:422966/1‑93 (MQ=255)

                             atatGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAt                                                            <  2:5722442/93‑1 (MQ=255)

                              tatGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATg                                                           >  2:112520/1‑93 (MQ=255)

                              tatGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATg                                                           <  2:2749248/93‑1 (MQ=255)

                               atGGAAGGGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATga                                                          >  1:4986677/1‑92 (MQ=255)

                                tGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGa                                                         <  1:6471466/93‑1 (MQ=255)

                                tGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGa                                                         <  2:9847064/93‑1 (MQ=255)

                                 ggAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGaa                                                        <  1:5163561/93‑1 (MQ=255)

                                   aaGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGaaaa                                                      <  1:9989414/93‑1 (MQ=255)

                                   aaGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGaaaa                                                      >  1:3896793/1‑93 (MQ=255)

                                    aGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAc                                                     <  2:5464023/93‑1 (MQ=255)

                                    aGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAc                                                     <  1:801503/93‑1 (MQ=255)

                                      tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACgg                                                   <  2:1367194/93‑1 (MQ=255)

                                      tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACgg                                                   >  2:2655170/1‑93 (MQ=255)

                                        cAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCg                                                 >  1:7135042/1‑93 (MQ=255)

                                        cAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCg                                                 <  1:2287622/93‑1 (MQ=255)

                                          gCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGaa                                               <  2:3141375/93‑1 (MQ=255)

                                          gCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGaa                                               >  1:697919/1‑93 (MQ=255)

                                            cGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGc                                             <  1:2918831/93‑1 (MQ=255)

                                            cGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGc                                             <  1:9672881/93‑1 (MQ=255)

                                            cGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGc                                             <  2:8840093/93‑1 (MQ=255)

                                             gCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGcc                                            >  2:9090091/1‑93 (MQ=255)

                                              cAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCt                                           >  1:6680019/1‑93 (MQ=255)

                                               aaCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          <  2:6267536/93‑1 (MQ=255)

                                                aCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCttt                                         <  1:6206713/93‑1 (MQ=255)

                                                  tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  2:7153816/93‑1 (MQ=255)

                                                  tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  2:6419212/93‑1 (MQ=255)

                                                   ggTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCt                                      >  1:8132236/1‑93 (MQ=255)

                                                   ggTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCt                                      >  1:3646097/1‑93 (MQ=255)

                                                     tgtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTgg                                    <  1:6873149/93‑1 (MQ=255)

                                                      gtTACTGCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGa                                   <  1:9085615/93‑1 (MQ=255)

                                                      gtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGa                                   <  2:175202/93‑1 (MQ=255)

                                                      gtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGa                                   <  2:8995061/93‑1 (MQ=255)

                                                       ttACTCCAGAGAGCCCTGCTCTACGTCGAAGGGGTGGGTCGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAg                                  <  1:8411330/93‑1 (MQ=255)

                                                       ttACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAg                                  >  2:2100280/1‑93 (MQ=255)

                                                       ttACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAg                                  >  2:3317632/1‑93 (MQ=255)

                                                       ttACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAg                                  >  1:5393230/1‑93 (MQ=255)

                                                          cTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCg                               <  1:8515795/93‑1 (MQ=255)

                                                           tCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCgg                              >  1:7484468/1‑92 (MQ=255)

                                                           tCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGt                              >  2:9452834/1‑93 (MQ=255)

                                                           tCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGGCgg                              >  1:4396670/1‑92 (MQ=255)

                                                            ccAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTg                             <  2:5633040/93‑1 (MQ=255)

                                                              aGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGa                           >  2:7639846/1‑93 (MQ=255)

                                                                aaaaCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAtt                         >  2:3877265/1‑93 (MQ=255)

                                                                 aaaCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTa                        >  2:2326492/1‑93 (MQ=255)

                                                                   aCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTaaa                      >  1:1348337/1‑93 (MQ=255)

                                                                   aCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTaaa                      <  1:9545459/93‑1 (MQ=255)

                                                                     ccTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGa                    <  2:1298760/93‑1 (MQ=255)

                                                                      cTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAt                   <  1:3134957/93‑1 (MQ=255)

                                                                       tGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTGCCTGGAGTCGTGGATTAAAGATc                  >  2:5534277/1‑93 (MQ=255)

                                                                        gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  2:96958/93‑1 (MQ=255)

                                                                        gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  1:6121572/93‑1 (MQ=255)

                                                                        gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  2:7939492/93‑1 (MQ=255)

                                                                          tctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAgg               <  2:348045/93‑1 (MQ=255)

                                                                           ctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGt              <  1:1783510/93‑1 (MQ=255)

                                                                             aCGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            >  2:8282067/1‑93 (MQ=255)

                                                                             aCGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            <  1:7263919/93‑1 (MQ=255)

                                                                             aCGTCGAAGGGGTGAGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            <  2:9925981/93‑1 (MQ=255)

                                                                               gTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGt          >  1:5701091/1‑93 (MQ=255)

                                                                                tCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTa         <  1:8822682/93‑1 (MQ=255)

                                                                                 cGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTAt        <  2:4604218/93‑1 (MQ=255)

                                                                                 cGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTAt        >  2:4540895/1‑93 (MQ=255)

                                                                                 cGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCCGTAt        <  2:6492113/93‑1 (MQ=255)

                                                                                  gAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTAtt       <  2:1828247/93‑1 (MQ=255)

                                                                                   aaGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTc      >  2:4683734/1‑93 (MQ=255)

                                                                                    aGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTcc     <  2:4994920/93‑1 (MQ=255)

                                                                                    aGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTcc     <  1:1213021/93‑1 (MQ=255)

                                                                                     ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    <  2:6983239/93‑1 (MQ=255)

                                                                                     ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    <  2:6039034/93‑1 (MQ=255)

                                                                                      gggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTg   >  2:5036823/1‑93 (MQ=255)

                                                                                      gggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTg   <  1:933138/93‑1 (MQ=255)

                                                                                      gggTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTg   <  1:7685727/93‑1 (MQ=255)

                                                                                       ggTGGGACGCCTGCTTTATACGCATCTCGATTTGTGGACACCGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTgc  <  1:8950671/93‑1 (MQ=255)

                                                                                       ggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTgc  >  1:2732415/1‑93 (MQ=255)

AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC  >  NC_000913/4018967‑4019146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 277 total aligned reads displayed.

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  >  NC_000913/4018964‑4019150

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGACGGGGTG                                                                                               >  SRR4302540.1395950/1‑94 (MQ=60)

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTG                                                                                               <  SRR4302540.9239606/94‑1 (MQ=60)

  TGAATCTGTTTAATACGGCGCGTCGCTCGAATGTGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGG                                                                                             <  SRR4302540.5242677/94‑1 (MQ=60)

   AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGA                                                                                            >  SRR4302540.10016633/1‑94 (MQ=60)

   AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGA                                                                                            >  SRR4302540.3237116/1‑94 (MQ=60)

   AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGA                                                                                            >  SRR4302540.26126/1‑94 (MQ=60)

   AAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGA                                                                                            >  SRR4302540.605539/1‑94 (MQ=60)

   AAATCTGTTTAATACGGCGCGTAGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGA                                                                                            >  SRR4302540.5676405/1‑94 (MQ=60)

    ATTCTGTTTAATACGGCTCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAATCCCTGCTCTACGTCGAAGGGGTGGGAC                                                                                           <  SRR4302540.8928635/94‑1 (MQ=60)

    AATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGAC                                                                                           <  SRR4302540.8399218/94‑1 (MQ=60)

     ATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACG                                                                                          >  SRR4302540.8519593/1‑94 (MQ=60)

       CTGTTGAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCC                                                                                        <  SRR4302540.4215166/94‑1 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302540.7008309/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302540.3041158/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       <  SRR4302540.9873507/94‑1 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302540.3425337/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACACTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302540.2659383/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTGCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       <  SRR4302540.9873506/94‑1 (MQ=60)

         GTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAG                                                                                      >  SRR4302540.5537977/1‑94 (MQ=60)

          TTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGC                                                                                     >  SRR4302540.849339/1‑94 (MQ=60)

          TTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGC                                                                                     >  SRR4302540.8725853/1‑94 (MQ=60)

          TTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGC                                                                                     >  SRR4302540.6027377/1‑94 (MQ=60)

            TAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTT                                                                                   >  SRR4302540.8162635/1‑94 (MQ=60)

            TAATACGGCCGTTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTT                                                                                   <  SRR4302540.8023997/94‑1 (MQ=60)

             AATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTT                                                                                  <  SRR4302540.9679967/94‑1 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 >  SRR4302540.4325105/1‑94 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 <  SRR4302540.10030789/94‑1 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 >  SRR4302540.858595/1‑94 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 >  SRR4302540.4096349/1‑94 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGGGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGGCGCCAGGTTTA                                                                                 >  SRR4302540.2183263/1‑94 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                <  SRR4302540.6766252/94‑1 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                <  SRR4302540.735311/94‑1 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                >  SRR4302540.2576623/1‑94 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                >  SRR4302540.813016/1‑94 (MQ=60)

                ACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATC                                                                               <  SRR4302540.2271745/94‑1 (MQ=60)

                ACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATC                                                                               <  SRR4302540.555943/94‑1 (MQ=60)

                 CGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCC                                                                              <  SRR4302540.7158453/94‑1 (MQ=60)

                 CGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCC                                                                              <  SRR4302540.9765450/94‑1 (MQ=60)

                 CGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCC                                                                              <  SRR4302540.7905949/94‑1 (MQ=60)

                 AGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCC                                                                              <  SRR4302540.2482593/94‑1 (MQ=60)

                  GGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCG                                                                             <  SRR4302540.8199916/94‑1 (MQ=60)

                    CGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCA                                                                           >  SRR4302540.2623679/1‑94 (MQ=60)

                    CGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCA                                                                           <  SRR4302540.1659778/94‑1 (MQ=60)

                     GCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAA                                                                          >  SRR4302540.4143332/1‑94 (MQ=60)

                      CGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAAC                                                                         >  SRR4302540.8459577/1‑94 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        >  SRR4302540.474624/1‑94 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      <  SRR4302540.10133280/94‑1 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      >  SRR4302540.2809524/1‑94 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      >  SRR4302540.5799829/1‑94 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      >  SRR4302540.9083472/1‑94 (MQ=60)

                          GCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAACCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGA                                                                     <  SRR4302540.4102827/94‑1 (MQ=60)

                          GCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGA                                                                     <  SRR4302540.5298127/94‑1 (MQ=60)

                          GCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGA                                                                     >  SRR4302540.6068902/1‑94 (MQ=60)

                          GCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGA                                                                     >  SRR4302540.309363/1‑94 (MQ=60)

                           CTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAT                                                                    >  SRR4302540.6005552/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   >  SRR4302540.5526766/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   <  SRR4302540.6223004/94‑1 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   >  SRR4302540.7949351/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   >  SRR4302540.9986808/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCGTTATCCGCAACTCGATT                                                                   >  SRR4302540.9084232/1‑94 (MQ=60)

                             TCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTTCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTT                                                                  <  SRR4302540.9690417/94‑1 (MQ=60)

                             TCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTT                                                                  <  SRR4302540.9838379/94‑1 (MQ=60)

                              CAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTA                                                                 >  SRR4302540.4999172/1‑94 (MQ=60)

                               AATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAT                                                                <  SRR4302540.6847959/94‑1 (MQ=60)

                               AATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAT                                                                <  SRR4302540.945/94‑1 (MQ=60)

                               AATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAT                                                                <  SRR4302540.3049441/94‑1 (MQ=60)

                                ATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATG                                                               <  SRR4302540.2660791/94‑1 (MQ=60)

                                ATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATG                                                               >  SRR4302540.2205872/1‑94 (MQ=60)

                                ATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATG                                                               <  SRR4302540.1497833/94‑1 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              >  SRR4302540.8867959/1‑94 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              >  SRR4302540.9363455/1‑94 (MQ=60)

                                 TATGGAAGGGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGA                                                              >  SRR4302540.5040673/1‑94 (MQ=60)

                                 TAGGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              <  SRR4302540.3889981/94‑1 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             <  SRR4302540.898223/94‑1 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             >  SRR4302540.701663/1‑94 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             >  SRR4302540.2360159/1‑94 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             <  SRR4302540.7015210/94‑1 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             >  SRR4302540.5127586/1‑94 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             <  SRR4302540.2801145/94‑1 (MQ=60)

                                   TGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAA                                                            <  SRR4302540.1695240/94‑1 (MQ=60)

                                   TGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAA                                                            <  SRR4302540.6259349/94‑1 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          >  SRR4302540.486568/1‑94 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          >  SRR4302540.2855953/1‑94 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          >  SRR4302540.3939081/1‑94 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGAAGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          >  SRR4302540.2855951/1‑94 (MQ=60)

                                      gatgcagcccgaacgtggtttcacccaAGAAACCCCTGCTCTACGTCGAGGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.5482584/67‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAGCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.10146681/94‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         >  SRR4302540.7170057/1‑94 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.10105851/94‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         >  SRR4302540.4683656/1‑94 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.5733498/94‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.7301051/94‑1 (MQ=60)

                                      AAGAGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302540.2101707/94‑1 (MQ=60)

                                       AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACG                                                        <  SRR4302540.810014/94‑1 (MQ=60)

                                       AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACG                                                        >  SRR4302540.1240235/1‑94 (MQ=60)

                                       AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACG                                                        <  SRR4302540.8523565/94‑1 (MQ=60)

                                       AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACG                                                        <  SRR4302540.4923829/94‑1 (MQ=60)

                                        GTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGCAAACGG                                                       >  SRR4302540.7727620/1‑94 (MQ=60)

                                        GTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGG                                                       >  SRR4302540.5114876/1‑94 (MQ=60)

                                         GGCAGCCGCAACTGGTGTTCCTCCAGAAAGCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGC                                                      <  SRR4302540.1536988/94‑1 (MQ=60)

                                          GCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCG                                                     >  SRR4302540.7214537/1‑94 (MQ=60)

                                           CAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGA                                                    <  SRR4302540.2078486/94‑1 (MQ=60)

                                           CAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGA                                                    <  SRR4302540.2312223/94‑1 (MQ=60)

                                            AGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAA                                                   <  SRR4302540.1576264/94‑1 (MQ=60)

                                            AGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAA                                                   >  SRR4302540.705406/1‑94 (MQ=60)

                                             GCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAG                                                  <  SRR4302540.2524789/94‑1 (MQ=60)

                                              CCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAATTCGATTTATGGAAAACGGCGAAGC                                                 >  SRR4302540.4835577/1‑94 (MQ=60)

                                              CCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGC                                                 <  SRR4302540.9653555/94‑1 (MQ=60)

                                               CGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTTCGGAAAACGGCGAAGCC                                                >  SRR4302540.9071615/1‑94 (MQ=60)

                                               CGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCC                                                >  SRR4302540.6446481/1‑94 (MQ=60)

                                               CGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCC                                                <  SRR4302540.9786704/94‑1 (MQ=60)

                                                GCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCT                                               <  SRR4302540.7192456/94‑1 (MQ=60)

                                                GCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCT                                               <  SRR4302540.521986/94‑1 (MQ=60)

                                                GCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCT                                               >  SRR4302540.6753807/1‑94 (MQ=60)

                                                 CAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTT                                              >  SRR4302540.3788567/1‑94 (MQ=60)

                                                  AACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTT                                             >  SRR4302540.6548176/1‑94 (MQ=60)

                                                  AACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTT                                             >  SRR4302540.9293893/1‑94 (MQ=60)

                                                   ACTGGTGTTCCTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTC                                            <  SRR4302540.6275797/94‑1 (MQ=60)

                                                   ACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTC                                            <  SRR4302540.6275796/94‑1 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           <  SRR4302540.2808070/94‑1 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           <  SRR4302540.7547289/94‑1 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          >  SRR4302540.8226628/1‑94 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          <  SRR4302540.8848296/94‑1 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          <  SRR4302540.10024583/94‑1 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          >  SRR4302540.3686035/1‑94 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         >  SRR4302540.4965448/1‑94 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         >  SRR4302540.396071/1‑94 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         >  SRR4302540.5729392/1‑94 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         >  SRR4302540.9480734/1‑94 (MQ=60)

                                                       GTGTTTCTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTGTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGG                                        <  SRR4302540.729914/94‑1 (MQ=60)

                                                       GTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGG                                        <  SRR4302540.4775481/94‑1 (MQ=60)

                                                        TGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGA                                       <  SRR4302540.5082178/94‑1 (MQ=60)

                                                        TGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGG                                       >  SRR4302540.1778611/1‑94 (MQ=60)

                                                         GTTACTGCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      <  SRR4302540.9194770/94‑1 (MQ=60)

                                                         GTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      <  SRR4302540.4285675/94‑1 (MQ=60)

                                                         GTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      >  SRR4302540.5452531/1‑94 (MQ=60)

                                                         GTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      <  SRR4302540.1339314/94‑1 (MQ=60)

                                                          TTACTCCAGAGAGCCCTGCTCTACGTCGAAGGGGTGGGTCGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGT                                     <  SRR4302540.8508957/94‑1 (MQ=60)

                                                          TTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGT                                     <  SRR4302540.774132/94‑1 (MQ=60)

                                                           TACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTC                                    >  SRR4302540.2972682/1‑94 (MQ=60)

                                                           TACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTC                                    >  SRR4302540.5476220/1‑94 (MQ=60)

                                                             CTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGT                                  >  SRR4302540.6730990/1‑94 (MQ=60)

                                                             CTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGT                                  <  SRR4302540.8614763/94‑1 (MQ=60)

                                                             CTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGT                                  >  SRR4302540.1078530/1‑94 (MQ=60)

                                                             CTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGG                                  >  SRR4302540.7568012/1‑94 (MQ=60)

                                                             CTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGG                                  >  SRR4302540.3445342/1‑94 (MQ=60)

                                                               CCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGG                                <  SRR4302540.2346385/94‑1 (MQ=60)

                                                               CCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGG                                <  SRR4302540.3047397/94‑1 (MQ=60)

                                                                CAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGA                               >  SRR4302540.6612258/1‑94 (MQ=60)

                                                                CAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTAGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGT                               >  SRR4302540.2311898/1‑94 (MQ=60)

                                                                 AGAAACCCCTGCTCTACGTCGAAGGGGCGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAATAGCGAAGCCTCTCCTGGAGTCGTGGAT                              >  SRR4302540.10053342/1‑94 (MQ=60)

                                                                 AGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAT                              >  SRR4302540.544681/1‑94 (MQ=60)

                                                                 AGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAT                              >  SRR4302540.5985988/1‑94 (MQ=60)

                                                                  GAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATT                             >  SRR4302540.1749013/1‑94 (MQ=60)

                                                                   AAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTA                            >  SRR4302540.379198/1‑94 (MQ=60)

                                                                    AAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAA                           <  SRR4302540.9563058/94‑1 (MQ=60)

                                                                    AAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAA                           <  SRR4302540.10039739/94‑1 (MQ=60)

                                                                     AACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAA                          <  SRR4302540.5745716/94‑1 (MQ=60)

                                                                     AACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAA                          >  SRR4302540.7840858/1‑94 (MQ=60)

                                                                     AACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAA                          >  SRR4302540.1362501/1‑94 (MQ=60)

                                                                      ACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAG                         <  SRR4302540.7500868/94‑1 (MQ=60)

                                                                        CCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAT                       >  SRR4302540.3013166/1‑94 (MQ=60)

                                                                         CTGCTCTACGTCGCAGGGGTGGGCCGCCAGCTTTATCCGCACCTCGATTTATGGAAAACGGCGCAGCCTTTCCTGGAGTCGTGGATTAAAGAAC                      <  SRR4302540.9039551/94‑1 (MQ=60)

                                                                         CTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATC                      >  SRR4302540.6252008/1‑94 (MQ=60)

                                                                         CTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATC                      <  SRR4302540.7806674/94‑1 (MQ=60)

                                                                         CTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATC                      <  SRR4302540.9867294/94‑1 (MQ=60)

                                                                         CTGCTCTACGTCGAAGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATC                      >  SRR4302540.8919994/1‑94 (MQ=60)

                                                                           GCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAG                    <  SRR4302540.7901803/94‑1 (MQ=60)

                                                                           GCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAG                    <  SRR4302540.5480257/94‑1 (MQ=60)

                                                                             TCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGT                  >  SRR4302540.3067473/1‑94 (MQ=60)

                                                                             TCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGT                  >  SRR4302540.5833758/1‑94 (MQ=60)

                                                                              CTACGTCGAAGGGGTGGGCCGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCCTTCCTGGAGTCGTGGATTAAAGATCAGGTG                 >  SRR4302540.5691468/1‑94 (MQ=60)

                                                                              CTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTC                 <  SRR4302540.1802885/94‑1 (MQ=60)

                                                                                ACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGG               <  SRR4302540.7344975/94‑1 (MQ=60)

                                                                                 CGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGT              >  SRR4302540.5763861/1‑94 (MQ=60)

                                                                                 CGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGT              >  SRR4302540.686704/1‑94 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTT             >  SRR4302540.3060133/1‑94 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTA             >  SRR4302540.4484003/1‑94 (MQ=60)

                                                                                   TCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTAT            <  SRR4302540.8924703/94‑1 (MQ=60)

                                                                                    CGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATT           >  SRR4302540.2916983/1‑94 (MQ=60)

                                                                                     GAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTC          >  SRR4302540.9983986/1‑94 (MQ=60)

                                                                                      AAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCC         >  SRR4302540.4407240/1‑94 (MQ=60)

                                                                                      AAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCC         >  SRR4302540.7234968/1‑94 (MQ=60)

                                                                                       AGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCT        <  SRR4302540.1225455/94‑1 (MQ=60)

                                                                                       AGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCT        <  SRR4302540.2701729/94‑1 (MQ=60)

                                                                                       AGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCT        >  SRR4302540.646056/1‑94 (MQ=60)

                                                                                        GGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTG       >  SRR4302540.1089658/1‑94 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      <  SRR4302540.942933/94‑1 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      >  SRR4302540.2761901/1‑94 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      >  SRR4302540.2761902/1‑94 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      >  SRR4302540.4740358/1‑94 (MQ=60)

                                                                                         GGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      <  SRR4302540.7772895/94‑1 (MQ=60)

                                                                                           GTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGC    >  SRR4302540.9354804/1‑94 (MQ=60)

                                                                                           GTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGC    <  SRR4302540.1128425/94‑1 (MQ=60)

                                                                                            TGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCT   <  SRR4302540.191822/94‑1 (MQ=60)

                                                                                            TGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCT   >  SRR4302540.4178534/1‑94 (MQ=60)

                                                                                            TGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGCCGACGCCTTTCCTGGCGTCGTGGATTAAAGATCAGGTCGGTATTCCTGGGCT   >  SRR4302540.3305902/1‑94 (MQ=60)

                                                                                             GGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  <  SRR4302540.4561887/94‑1 (MQ=60)

                                                                                             GGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  <  SRR4302540.6475321/94‑1 (MQ=60)

                                                                                             GGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  <  SRR4302540.8457353/94‑1 (MQ=60)

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  >  NC_000913/4018964‑4019150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`