Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,019,057	A→G	V415V (GTA→GTG)	yigR →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,019,057	0	A	G	100.0%	838.2 / NA	265	V415V (GTA→GTG)	yigR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/131); total (134/131)

Only 100 of 274 total aligned reads displayed.

AATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC  >  NC_000913/4018968‑4019146

aaTCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGa                                                                                        >  2:893245/1‑93 (MQ=255)

 aTCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGAc                                                                                       >  1:4075909/1‑93 (MQ=255)

  tCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACg                                                                                      <  2:4313557/93‑1 (MQ=255)

    tGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    >  2:1459498/1‑93 (MQ=255)

    cgTTTAATACGGCGCGTCGTTTCAATATGGAAGTGCGGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    <  1:2770759/92‑1 (MQ=255)

     gTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGcc                                                                                    >  2:3802247/1‑92 (MQ=255)

     gTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCa                                                                                   <  2:2877245/93‑1 (MQ=255)

      tttAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAg                                                                                  >  1:5797058/1‑93 (MQ=255)

         aaTACGGCGCGTCGCTTCAATATGGAAGTGCAGCCACAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCtt                                                                               <  1:3976053/93‑1 (MQ=255)

          aTACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCttt                                                                              >  1:481072/1‑93 (MQ=255)

           tACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTa                                                                             <  1:1433147/93‑1 (MQ=255)

           tACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTa                                                                             >  1:2296807/1‑93 (MQ=255)

            aCGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAACCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAt                                                                            <  2:2468410/93‑1 (MQ=255)

            aCGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAt                                                                            >  1:568429/1‑93 (MQ=255)

             cGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATc                                                                           >  1:3566866/1‑93 (MQ=255)

              ggCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATcc                                                                          <  1:5370329/93‑1 (MQ=255)

               gcgcGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCg                                                                         >  2:930565/1‑93 (MQ=255)

                cgcgTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGc                                                                        >  2:5469613/1‑93 (MQ=255)

                   gTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAAc                                                                     <  1:272653/93‑1 (MQ=255)

                       cTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGa                                                                 <  2:5592362/93‑1 (MQ=255)

                         tCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAtt                                                               >  1:1043802/1‑93 (MQ=255)

                           aaTATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTa                                                             <  1:3175544/93‑1 (MQ=255)

                           aaTATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTa                                                             >  1:5165514/1‑93 (MQ=255)

                            atatGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAt                                                            >  1:5077285/1‑93 (MQ=255)

                             tatGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATg                                                           >  2:4802636/1‑93 (MQ=255)

                              atGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATgg                                                          >  1:663797/1‑93 (MQ=255)

                               tGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGa                                                         >  1:4625012/1‑93 (MQ=255)

                               tGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGa                                                         >  1:714361/1‑93 (MQ=255)

                                ggAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGaa                                                        >  1:5236076/1‑93 (MQ=255)

                                 gAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGaaa                                                       <  1:768370/93‑1 (MQ=255)

                                   aGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAc                                                     <  1:1398143/93‑1 (MQ=255)

                                    gTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACg                                                    <  1:5054631/93‑1 (MQ=255)

                                     tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACgg                                                   <  1:3760619/93‑1 (MQ=255)

                                      gCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGc                                                  <  1:1738957/93‑1 (MQ=255)

                                         gCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGaa                                               <  1:1959601/93‑1 (MQ=255)

                                           cGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGc                                             >  2:3445962/1‑93 (MQ=255)

                                            gCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGcc                                            <  2:5823839/93‑1 (MQ=255)

                                             cAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCt                                           <  1:246322/93‑1 (MQ=255)

                                             cAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCt                                           >  1:6253586/1‑93 (MQ=255)

                                             cAACT‑GTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          >  2:4236729/1‑93 (MQ=255)

                                              aaCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          <  2:707159/93‑1 (MQ=255)

                                              aaCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          >  2:4762406/1‑93 (MQ=255)

                                              aaCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          <  1:4415300/93‑1 (MQ=255)

                                              aaCTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCtt                                          <  2:618440/93‑1 (MQ=255)

                                               aCTGGTGTTACTCCAGAAAACCCTGCTGTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCttt                                         <  1:3107085/93‑1 (MQ=255)

                                                cTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTc                                        <  2:400557/93‑1 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  1:1731304/93‑1 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  2:5697222/93‑1 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       >  1:4142561/1‑93 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  2:1267027/93‑1 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       <  2:661829/93‑1 (MQ=255)

                                                 tGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTcc                                       >  1:5591959/1‑93 (MQ=255)

                                                  ggTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCt                                      >  2:5954027/1‑93 (MQ=255)

                                                    tgtTGCTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAACCGGCGAAGCCTTTCCTgg                                    <  1:4370977/93‑1 (MQ=255)

                                                    tgtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTgg                                    <  1:5500335/93‑1 (MQ=255)

                                                     gtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGa                                   >  2:5157270/1‑93 (MQ=255)

                                                      ttACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAg                                  >  2:4693889/1‑93 (MQ=255)

                                                       tACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGt                                 >  2:305973/1‑93 (MQ=255)

                                                       tACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGt                                 <  2:1755197/93‑1 (MQ=255)

                                                       tACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGt                                 <  1:4043465/93‑1 (MQ=255)

                                                        aCTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTc                                <  1:4434534/93‑1 (MQ=255)

                                                         cTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCg                               >  2:4367060/1‑93 (MQ=255)

                                                          tCCAGAAACCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGt                              <  1:915326/93‑1 (MQ=255)

                                                          tCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGt                              <  1:3293937/93‑1 (MQ=255)

                                                            cAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTgg                            >  1:3579234/1‑93 (MQ=255)

                                                              gAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAt                          <  2:2574853/93‑1 (MQ=255)

                                                              gAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAt                          >  2:2449734/1‑93 (MQ=255)

                                                              gAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAt                          <  2:3770992/93‑1 (MQ=255)

                                                                aaaCCCTGCTCTACGTCGAAGGGGAGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTa                        >  2:2964402/1‑93 (MQ=255)

                                                                 aaCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTaa                       <  1:3179031/93‑1 (MQ=255)

                                                                  aCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTaaa                      >  2:4578251/1‑93 (MQ=255)

                                                                   cccTTCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAg                     <  1:2968480/93‑1 (MQ=255)

                                                                   cccTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAg                     >  2:4928873/1‑93 (MQ=255)

                                                                   cccTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAg                     <  1:5196200/93‑1 (MQ=255)

                                                                     cTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAt                   >  2:1829237/1‑93 (MQ=255)

                                                                      tGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATc                  >  2:2686773/1‑93 (MQ=255)

                                                                      tGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATc                  <  2:5335515/93‑1 (MQ=255)

                                                                      tGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAAGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAta                  >  2:1086975/1‑92 (MQ=255)

                                                                       tctctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  1:5912895/92‑1 (MQ=255)

                                                                       gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  2:325689/93‑1 (MQ=255)

                                                                       gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 >  2:2857246/1‑93 (MQ=255)

                                                                       gCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCa                 <  2:2041066/93‑1 (MQ=255)

                                                                        ctctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAg                <  1:6085073/93‑1 (MQ=255)

                                                                        cgctACGTCGAAGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAg                <  2:1375310/91‑1 (MQ=255)

                                                                          ctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGATAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGt              <  1:2018699/93‑1 (MQ=255)

                                                                          ctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGt              <  2:4426521/93‑1 (MQ=255)

                                                                          ctACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGt              >  1:4502553/1‑93 (MQ=255)

                                                                           tACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTc             >  2:238247/1‑93 (MQ=255)

                                                                           tACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTc             <  2:2205963/93‑1 (MQ=255)

                                                                           tACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTc             <  1:985807/93‑1 (MQ=255)

                                                                            aCGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            >  2:5027830/1‑93 (MQ=255)

                                                                            aCGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            >  2:5933165/1‑93 (MQ=255)

                                                                            aCGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCg            >  2:6258475/1‑93 (MQ=255)

                                                                              gTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGt          >  1:1014871/1‑93 (MQ=255)

                                                                               tCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTa         <  2:2017892/93‑1 (MQ=255)

                                                                                  aaGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTc      <  1:114134/93‑1 (MQ=255)

                                                                                    ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    <  2:3653152/93‑1 (MQ=255)

                                                                                    ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    >  2:3218432/1‑93 (MQ=255)

                                                                                    ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    <  1:5981178/93‑1 (MQ=255)

                                                                                    ggggTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt    <  1:3502032/93‑1 (MQ=255)

AATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC  >  NC_000913/4018968‑4019146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  >  NC_000913/4018964‑4019150

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTG                                                                                               >  SRR4302533.2491891/1‑94 (MQ=60)

 TTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGG                                                                                              >  SRR4302533.766076/1‑94 (MQ=60)

  TAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGG                                                                                             <  SRR4302533.5786283/94‑1 (MQ=60)

  TAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGG                                                                                             <  SRR4302533.5406503/94‑1 (MQ=60)

    AATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGAC                                                                                           >  SRR4302533.4100720/1‑94 (MQ=60)

     ATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACG                                                                                          <  SRR4302533.6031019/94‑1 (MQ=60)

      TCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGC                                                                                         >  SRR4302533.818657/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       <  SRR4302533.3825515/94‑1 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302533.2650147/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       >  SRR4302533.2365459/1‑94 (MQ=60)

        TGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGCGGGACGCCA                                                                                       >  SRR4302533.1125668/1‑94 (MQ=60)

        CGTTTAATACGGCGCGTCGTTTCAATATGGAAGTGCGGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCA                                                                                       <  SRR4302533.2787759/94‑1 (MQ=60)

         GTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAG                                                                                      >  SRR4302533.3563872/1‑94 (MQ=60)

         GTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAG                                                                                      >  SRR4302533.4401127/1‑94 (MQ=60)

         GTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAG                                                                                      >  SRR4302533.5832082/1‑94 (MQ=60)

            TAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTT                                                                                   >  SRR4302533.5106328/1‑94 (MQ=60)

            TAATAAGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCGT                                                                                   >  SRR4302533.2365452/1‑94 (MQ=60)

             AATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTT                                                                                  >  SRR4302533.483947/1‑94 (MQ=60)

             AATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTT                                                                                  >  SRR4302533.973144/1‑94 (MQ=60)

             AATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCACAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTT                                                                                  <  SRR4302533.4000258/94‑1 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 >  SRR4302533.2311032/1‑94 (MQ=60)

              ATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTA                                                                                 >  SRR4302533.1031774/1‑94 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                <  SRR4302533.1639440/94‑1 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                <  SRR4302533.5198063/94‑1 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                <  SRR4302533.1441805/94‑1 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                >  SRR4302533.571789/1‑94 (MQ=60)

               TACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGATGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTAT                                                                                >  SRR4302533.4581919/1‑94 (MQ=60)

                ACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATC                                                                               >  SRR4302533.3588848/1‑94 (MQ=60)

                ACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGAGGTGGGACGCCAGCTTTATC                                                                               >  SRR4302533.741139/1‑94 (MQ=60)

                  GGCTCGTCCCTTCAATAGGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCG                                                                             <  SRR4302533.319725/94‑1 (MQ=60)

                  GGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCG                                                                             >  SRR4302533.1994889/1‑94 (MQ=60)

                  GGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCG                                                                             <  SRR4302533.5402597/94‑1 (MQ=60)

                    CGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCA                                                                           >  SRR4302533.4451143/1‑94 (MQ=60)

                    CGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCA                                                                           >  SRR4302533.5712406/1‑94 (MQ=60)

                      CGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTNGGACGCCAGCTTTNTNCNCNAC                                                                         >  SRR4302533.5176164/1‑94 (MQ=60)

                      CGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAAC                                                                         >  SRR4302533.3907103/1‑94 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        >  SRR4302533.2803366/1‑94 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        >  SRR4302533.6189842/1‑94 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        <  SRR4302533.274312/94‑1 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        >  SRR4302533.3123295/1‑94 (MQ=60)

                       GTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACT                                                                        <  SRR4302533.5408541/94‑1 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      >  SRR4302533.5985656/1‑94 (MQ=60)

                         CGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCG                                                                      >  SRR4302533.4908613/1‑94 (MQ=60)

                           CTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAT                                                                    >  SRR4302533.5645317/1‑94 (MQ=60)

                           CTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGAT                                                                    >  SRR4302533.928930/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   >  SRR4302533.1049938/1‑94 (MQ=60)

                            TTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATT                                                                   >  SRR4302533.5150696/1‑94 (MQ=60)

                              CAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTA                                                                 <  SRR4302533.422396/94‑1 (MQ=60)

                              CAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTA                                                                 >  SRR4302533.5196707/1‑94 (MQ=60)

                               AATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAT                                                                >  SRR4302533.5107974/1‑94 (MQ=60)

                               AATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTAT                                                                <  SRR4302533.3195079/94‑1 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              <  SRR4302533.2539487/94‑1 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              >  SRR4302533.4096005/1‑94 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              >  SRR4302533.667715/1‑94 (MQ=60)

                                 TATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGG                                                              >  SRR4302533.871271/1‑94 (MQ=60)

                                  ATGGAAGTGCCGCCTCAACTGGTGTTACTCCAGAAATCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             <  SRR4302533.2121797/94‑1 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             >  SRR4302533.4653046/1‑94 (MQ=60)

                                  ATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGGGGGACGCCAGCTTTATCCGCAACTCGATTTATGGA                                                             >  SRR4302533.718577/1‑94 (MQ=60)

                                   TGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAA                                                            >  SRR4302533.5267558/1‑94 (MQ=60)

                                    GGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAA                                                           >  SRR4302533.5926892/1‑94 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          <  SRR4302533.772901/94‑1 (MQ=60)

                                     GAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAA                                                          <  SRR4302533.2762087/94‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAT                                                         <  SRR4302533.4841126/94‑1 (MQ=60)

                                      AAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAAC                                                         <  SRR4302533.4046186/94‑1 (MQ=60)

                                       AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACG                                                        <  SRR4302533.1406570/94‑1 (MQ=60)

                                        GTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGG                                                       <  SRR4302533.5085188/94‑1 (MQ=60)

                                        GTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGG                                                       >  SRR4302533.703097/1‑94 (MQ=60)

                                         TGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGC                                                      <  SRR4302533.3783668/94‑1 (MQ=60)

                                         TGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGC                                                      >  SRR4302533.5774502/1‑94 (MQ=60)

                                          GCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCG                                                     <  SRR4302533.1749504/94‑1 (MQ=60)

                                           CAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGA                                                    >  SRR4302533.4133843/1‑94 (MQ=60)

                                            AGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAA                                                   >  SRR4302533.1129254/1‑94 (MQ=60)

                                            AGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAA                                                   >  SRR4302533.4490333/1‑94 (MQ=60)

                                             GCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAG                                                  <  SRR4302533.1971559/94‑1 (MQ=60)

                                              CCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGC                                                 >  SRR4302533.5933670/1‑94 (MQ=60)

                                                GCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCT                                               >  SRR4302533.6290990/1‑94 (MQ=60)

                                                 CAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTT                                              <  SRR4302533.247846/94‑1 (MQ=60)

                                                  AACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTT                                             <  SRR4302533.4441963/94‑1 (MQ=60)

                                                  AACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTT                                             >  SRR4302533.5741906/1‑94 (MQ=60)

                                                   ACTGGTGTTACTCCAGAAAACCCTGCTGTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTC                                            <  SRR4302533.3126181/94‑1 (MQ=60)

                                                   ACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTC                                            <  SRR4302533.3135212/94‑1 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           >  SRR4302533.4167677/1‑94 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           <  SRR4302533.5099869/94‑1 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           >  SRR4302533.14278/1‑94 (MQ=60)

                                                    CTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCC                                           >  SRR4302533.5625740/1‑94 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          >  SRR4302533.2906125/1‑94 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          <  SRR4302533.1603949/94‑1 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          <  SRR4302533.3531423/94‑1 (MQ=60)

                                                     TGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCT                                          <  SRR4302533.1741803/94‑1 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         <  SRR4302533.4504493/94‑1 (MQ=60)

                                                      GGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTG                                         <  SRR4302533.5506580/94‑1 (MQ=60)

                                                       GTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGG                                        <  SRR4302533.4166502/94‑1 (MQ=60)

                                                       GTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGG                                        <  SRR4302533.3594170/94‑1 (MQ=60)

                                                        TTTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGA                                       <  SRR4302533.1917135/94‑1 (MQ=60)

                                                        TGTTGCTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAACCGGCGAAGCCTTTCCTGGA                                       <  SRR4302533.4397363/94‑1 (MQ=60)

                                                        TGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGA                                       <  SRR4302533.5533516/94‑1 (MQ=60)

                                                        TGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGA                                       <  SRR4302533.1741862/94‑1 (MQ=60)

                                                         GTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      >  SRR4302533.659100/1‑94 (MQ=60)

                                                         GTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAG                                      <  SRR4302533.3606944/94‑1 (MQ=60)

                                                          TTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGT                                     <  SRR4302533.1165552/94‑1 (MQ=60)

                                                           TACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTC                                    <  SRR4302533.4068077/94‑1 (MQ=60)

                                                           TACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTC                                    <  SRR4302533.5340102/94‑1 (MQ=60)

                                                            ACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCG                                   <  SRR4302533.4461342/94‑1 (MQ=60)

                                                              TCCAGAAACCCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTG                                 <  SRR4302533.920705/94‑1 (MQ=60)

                                                              TCCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTG                                 <  SRR4302533.3314267/94‑1 (MQ=60)

                                                               CCAGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGG                                >  SRR4302533.3601290/1‑94 (MQ=60)

                                                                 AGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAT                              >  SRR4302533.1297919/1‑94 (MQ=60)

                                                                 AGAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAT                              >  SRR4302533.5264537/1‑94 (MQ=60)

                                                                  GAAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATT                             <  SRR4302533.216663/94‑1 (MQ=60)

                                                                   AAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTA                            >  SRR4302533.5310774/1‑94 (MQ=60)

                                                                   AAAACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTA                            >  SRR4302533.4816838/1‑94 (MQ=60)

                                                                     AACCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAA                          <  SRR4302533.3198586/94‑1 (MQ=60)

                                                                       CCCTTCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGA                        <  SRR4302533.2986631/94‑1 (MQ=60)

                                                                       CCCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGA                        <  SRR4302533.5227537/94‑1 (MQ=60)

                                                                        CCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAT                       >  SRR4302533.622501/1‑94 (MQ=60)

                                                                        CCTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAT                       <  SRR4302533.3185842/94‑1 (MQ=60)

                                                                         CTGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATC                      >  SRR4302533.4651090/1‑94 (MQ=60)

                                                                          TGCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCA                     >  SRR4302533.5230774/1‑94 (MQ=60)

                                                                           TCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAG                    <  SRR4302533.5948626/94‑1 (MQ=60)

                                                                           GCTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAG                    <  SRR4302533.3288690/94‑1 (MQ=60)

                                                                            CTCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGG                   <  SRR4302533.6121863/94‑1 (MQ=60)

                                                                            CTCTACGTCGAAGGAGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGG                   <  SRR4302533.3414309/94‑1 (MQ=60)

                                                                             TCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGT                  >  SRR4302533.4529831/1‑94 (MQ=60)

                                                                             TCTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGT                  <  SRR4302533.4449190/94‑1 (MQ=60)

                                                                              CTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGATAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTC                 <  SRR4302533.2031135/94‑1 (MQ=60)

                                                                              CTACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTC                 >  SRR4302533.3312268/1‑94 (MQ=60)

                                                                               TACGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCG                <  SRR4302533.991577/94‑1 (MQ=60)

                                                                                 CGTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGT              >  SRR4302533.1020831/1‑94 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTA             <  SRR4302533.5194834/94‑1 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTA             <  SRR4302533.4047901/94‑1 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTA             >  SRR4302533.1742757/1‑94 (MQ=60)

                                                                                  GTCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTA             >  SRR4302533.2999154/1‑94 (MQ=60)

                                                                                   TCGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTAT            <  SRR4302533.5535496/94‑1 (MQ=60)

                                                                                    CGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATT           >  SRR4302533.652779/1‑94 (MQ=60)

                                                                                    CGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATT           >  SRR4302533.3601540/1‑94 (MQ=60)

                                                                                    CGAAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATT           >  SRR4302533.744306/1‑94 (MQ=60)

                                                                                      AAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCC         <  SRR4302533.6109437/94‑1 (MQ=60)

                                                                                      AAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCC         <  SRR4302533.114858/94‑1 (MQ=60)

                                                                                      AAGGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCC         >  SRR4302533.1950438/1‑94 (MQ=60)

                                                                                        GGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTG       <  SRR4302533.6017403/94‑1 (MQ=60)

                                                                                        GGGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTG       <  SRR4302533.3523627/94‑1 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      <  SRR4302533.3463776/94‑1 (MQ=60)

                                                                                         GGGTGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGC      >  SRR4302533.4214794/1‑94 (MQ=60)

                                                                                            TGGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCT   <  SRR4302533.1230241/94‑1 (MQ=60)

                                                                                             GGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  <  SRR4302533.2420089/94‑1 (MQ=60)

                                                                                             GGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  <  SRR4302533.177541/94‑1 (MQ=60)

GTTAAATCTGTTTAATACGGCGCGTCGCTTCAATATGGAAGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTG  >  NC_000913/4018964‑4019150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`