Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,106,773 A→G V120V (GTA→GTG)  sbp → periplasmic sulfate‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,106,7730AG99.8% 1558.3 / ‑5.4 479V120V (GTA→GTG) sbpperiplasmic sulfate‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (220/258);  total (220/259)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.31e-01

Only 100 of 489 total aligned reads displayed.

AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG  >  NC_000913/4106683‑4106862
                                                                                          |                                                                                         
 gttGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGt                                                                                        >  1:2943465/2‑93 (MQ=255)
  ttGCGGAGCGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTa                                                                                       <  2:8569296/93‑1 (MQ=255)
  ttGCGAAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTa                                                                                       <  1:7524325/93‑1 (MQ=255)
   tGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTaa                                                                                      <  1:1653485/93‑1 (MQ=255)
   tGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTaa                                                                                      <  2:1926986/93‑1 (MQ=255)
     cGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAgg                                                                                    <  1:5135801/93‑1 (MQ=255)
      ggAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAggg                                                                                   <  2:7716210/93‑1 (MQ=255)
          cgcgGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAt                                                                               <  1:9438227/93‑1 (MQ=255)
           gcgggcggATTGATAAAGAGTGGATCAAGCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATc                                                                              <  1:6963960/93‑1 (MQ=255)
           gcgggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATc                                                                              <  2:5880542/93‑1 (MQ=255)
              ggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGa                                                                           >  2:4545420/1‑93 (MQ=255)
              ggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGa                                                                           >  2:2131212/1‑93 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCgta                                                                          >  1:4445843/1‑91 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGaa                                                                          <  2:3813114/93‑1 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGaa                                                                          <  1:5958197/93‑1 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGaa                                                                          >  1:2191122/1‑93 (MQ=255)
                cggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAg                                                                         <  1:2023168/93‑1 (MQ=255)
                   aTTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAg                                                                      >  2:567162/1‑93 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     >  1:1684890/1‑93 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     <  2:838348/93‑1 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     >  1:9612904/1‑93 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     >  2:7915943/1‑93 (MQ=255)
                     tGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAt                                                                    >  1:4641849/1‑93 (MQ=255)
                        tAAAGAGTGGATCAAACGTCTGCCGGATACCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCa                                                                 <  2:2562784/93‑1 (MQ=255)
                         aaaGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAt                                                                <  1:6454437/93‑1 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              >  1:7171420/1‑93 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              >  2:6306640/1‑93 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              <  2:9442830/93‑1 (MQ=255)
                            gagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCTACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAc                                                             >  2:4455095/1‑93 (MQ=255)
                            gagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAc                                                             <  1:4166286/93‑1 (MQ=255)
                             agTGGATCAAACGGCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACt                                                            <  1:2431666/93‑1 (MQ=255)
                              gTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTg                                                           >  2:2880478/1‑93 (MQ=255)
                                ggATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCGATGACTGGa                                                         >  1:3227372/1‑93 (MQ=255)
                                ggATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGa                                                         <  2:1698941/93‑1 (MQ=255)
                                  aTCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAc                                                       <  1:14268/93‑1 (MQ=255)
                                    cAAACGTCTGCCGTATAACTCCGCACCGTACACTTCCACAATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGa                                                     <  1:10003331/93‑1 (MQ=255)
                                    cAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGa                                                     >  2:7133092/1‑93 (MQ=255)
                                    cAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGa                                                     >  1:3995160/1‑93 (MQ=255)
                                     aaaCGTCTGCGGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGTTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAt                                                    <  1:5893905/93‑1 (MQ=255)
                                     aaaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAt                                                    <  1:8688097/93‑1 (MQ=255)
                                      aaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATc                                                   <  1:4535402/93‑1 (MQ=255)
                                      aaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATc                                                   >  1:1289882/1‑93 (MQ=255)
                                        cGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTg                                                 >  1:6663271/1‑93 (MQ=255)
                                         gTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCTGATCCATGACTGGAACGATCTGa                                                >  2:7229492/1‑93 (MQ=255)
                                         gTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGa                                                >  2:101171/1‑93 (MQ=255)
                                         gTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGa                                                >  1:2622686/1‑93 (MQ=255)
                                         gTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGa                                                <  2:5084424/93‑1 (MQ=255)
                                          tCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAt                                               >  1:6344164/1‑93 (MQ=255)
                                           cTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAtt                                              <  1:2806253/93‑1 (MQ=255)
                                            tGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTa                                             >  1:3782487/1‑93 (MQ=255)
                                             gCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTaa                                            <  2:2332432/93‑1 (MQ=255)
                                               cgaaTACCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAc                                          <  1:7871584/90‑1 (MQ=255)
                                               cGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAc                                          <  2:7474025/93‑1 (MQ=255)
                                                ggATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAcc                                         >  1:7987155/1‑93 (MQ=255)
                                                 gATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATTACTGGAACGATCTGATTAAACCg                                        >  2:5584824/1‑93 (MQ=255)
                                                 gATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCg                                        >  1:5724047/1‑93 (MQ=255)
                                                  aTAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCgg                                       >  2:4933048/1‑93 (MQ=255)
                                                  aTAACTCAGCACCGTGCCCTTCCACCATTGTTTTCCTGGTGAGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCgg                                       <  1:8295100/93‑1 (MQ=255)
                                                   tAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCggg                                      <  1:8526969/93‑1 (MQ=255)
                                                   tAACTCCGCACCGTACACTTCAACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCggg                                      <  2:7049266/93‑1 (MQ=255)
                                                       tCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGtt                                  <  1:9719218/93‑1 (MQ=255)
                                                        ccGCACCGTCCACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGttt                                 <  2:8174469/93‑1 (MQ=255)
                                                        ccGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGttt                                 >  2:406717/1‑93 (MQ=255)
                                                        ccGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGttt                                 <  2:984874/93‑1 (MQ=255)
                                                         cGCACCGTACCCTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAACCCGGGTGTTTc                                <  1:1751366/93‑1 (MQ=255)
                                                         cGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGTAACGATCTGATTAAACCGGGTGTTTc                                <  2:3194883/93‑1 (MQ=255)
                                                         cGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTc                                >  1:7325663/1‑93 (MQ=255)
                                                          gCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCg                               >  2:6812958/1‑93 (MQ=255)
                                                          gCACCGTACACTTCCACCATTGTTTTCCTGGGGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCg                               >  2:7975781/1‑93 (MQ=255)
                                                            aCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGt                             >  1:6223172/1‑93 (MQ=255)
                                                               gTACACTTCCCCCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAt                          <  2:4793228/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  1:7092423/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  2:332445/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  2:8801186/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  2:1311238/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  1:9208484/93‑1 (MQ=255)
                                                                    cTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGc                     <  1:3634979/93‑1 (MQ=255)
                                                                     ttCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGcc                    >  1:9073057/1‑93 (MQ=255)
                                                                      tCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCt                   >  1:8897328/1‑93 (MQ=255)
                                                                        caccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTaa                 >  1:3845541/1‑93 (MQ=255)
                                                                          ccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATc               >  1:6526326/1‑93 (MQ=255)
                                                                          ccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATc               >  2:6566308/1‑93 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATcc              <  2:9001696/93‑1 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATcc              >  1:3536543/1‑93 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATcc              <  2:2222502/93‑1 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGATTCGGTGATCCCGCCTAATcc              >  2:3558161/1‑93 (MQ=255)
                                                                               gTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaa          <  1:5641803/93‑1 (MQ=255)
                                                                               gTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaa          <  1:5279933/93‑1 (MQ=255)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGCTCACGCCTAATTCGcaag         >  1:9312312/1‑92 (MQ=38)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         <  2:1156970/93‑1 (MQ=255)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         <  1:4889725/93‑1 (MQ=255)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         <  2:1413997/93‑1 (MQ=255)
                                                                                  ttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGc       >  2:2014260/1‑93 (MQ=255)
                                                                                  ttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGc       >  2:6113501/1‑93 (MQ=255)
                                                                                    ccTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGctc     >  1:3300224/1‑93 (MQ=255)
                                                                                    ccTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGctc     <  2:9678404/93‑1 (MQ=255)
                                                                                     cTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGctct    <  1:8120295/93‑1 (MQ=255)
                                                                                      tGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCtg   <  1:7742064/93‑1 (MQ=255)
                                                                                       ggTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCtgg  >  2:6440118/1‑93 (MQ=255)
                                                                                       ggTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCtgg  <  1:3159924/93‑1 (MQ=255)
                                                                                          |                                                                                         
AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG  >  NC_000913/4106683‑4106862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 284 total aligned reads displayed.
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  NC_000913/4106680‑4106866
                                                                                             |                                                                                             
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTG                                                                                               >  SRR4302540.780892/1‑94 (MQ=60)
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTG                                                                                               <  SRR4302540.1954687/94‑1 (MQ=60)
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTA                                                                                               <  SRR4302540.754007/94‑1 (MQ=60)
 GCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGC                                                                                              >  SRR4302540.1429254/1‑94 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             <  SRR4302540.7928455/94‑1 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             <  SRR4302540.7688524/94‑1 (MQ=60)
   AGTTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            >  SRR4302540.2975824/1‑94 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            >  SRR4302540.2975825/1‑94 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            >  SRR4302540.3777657/1‑94 (MQ=60)
    ATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTA                                                                                           <  SRR4302540.87067/94‑1 (MQ=60)
     TTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAA                                                                                          <  SRR4302540.7608509/94‑1 (MQ=60)
     TTGCGAAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAA                                                                                          <  SRR4302540.7608510/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302540.1671506/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302540.4944617/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302540.4656951/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302540.5543884/94‑1 (MQ=60)
       GCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGG                                                                                        >  SRR4302540.7283328/1‑94 (MQ=60)
        CGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGG                                                                                       <  SRR4302540.5191429/94‑1 (MQ=60)
        CGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGG                                                                                       >  SRR4302540.4601869/1‑94 (MQ=60)
         GGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGA                                                                                      >  SRR4302540.2077877/1‑94 (MQ=60)
         GGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGA                                                                                      >  SRR4302540.7241033/1‑94 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    <  SRR4302540.4895720/94‑1 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    <  SRR4302540.823557/94‑1 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    <  SRR4302540.7283844/94‑1 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    >  SRR4302540.9425059/1‑94 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   >  SRR4302540.1219584/1‑94 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   <  SRR4302540.9328953/94‑1 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   <  SRR4302540.6484582/94‑1 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAGCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 <  SRR4302540.7041404/94‑1 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 <  SRR4302540.7979170/94‑1 (MQ=60)
               GGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCG                                                                                <  SRR4302540.7622302/94‑1 (MQ=60)
                 GGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGTA                                                                              >  SRR4302540.4494026/1‑94 (MQ=60)
                 GGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAA                                                                              >  SRR4302540.6590795/1‑94 (MQ=60)
                 GGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAA                                                                              <  SRR4302540.6241662/94‑1 (MQ=60)
                 GGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAA                                                                              >  SRR4302540.2214782/1‑94 (MQ=60)
                  GCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAG                                                                             <  SRR4302540.6024096/94‑1 (MQ=60)
                   CGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGC                                                                            <  SRR4302540.9724258/94‑1 (MQ=60)
                   CGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGC                                                                            <  SRR4302540.2045032/94‑1 (MQ=60)
                   CGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGC                                                                            >  SRR4302540.9513220/1‑94 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           >  SRR4302540.2187766/1‑94 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           >  SRR4302540.1757792/1‑94 (MQ=60)
                     GATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAG                                                                          <  SRR4302540.2483603/94‑1 (MQ=60)
                     GATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAG                                                                          >  SRR4302540.5336346/1‑94 (MQ=60)
                     GATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAG                                                                          <  SRR4302540.6517910/94‑1 (MQ=60)
                      ATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGA                                                                         >  SRR4302540.9726245/1‑94 (MQ=60)
                      ATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGA                                                                         >  SRR4302540.1703173/1‑94 (MQ=60)
                      ATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGAGAAATCCGAAGCAGT                                                                         >  SRR4302540.1703172/1‑94 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        >  SRR4302540.8589720/1‑94 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        >  SRR4302540.4691546/1‑94 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        >  SRR4302540.4691547/1‑94 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        <  SRR4302540.6956484/94‑1 (MQ=60)
                        TGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATC                                                                       <  SRR4302540.6553600/94‑1 (MQ=60)
                        TGATAAAGAGGTGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATC                                                                       <  SRR4302540.8071234/94‑1 (MQ=60)
                         GATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCC                                                                      <  SRR4302540.10104622/94‑1 (MQ=60)
                         GATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATACGAAGCAGATCC                                                                      >  SRR4302540.9143513/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302540.6022938/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302540.9242004/1‑94 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302540.4644837/94‑1 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302540.4424003/94‑1 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302540.7219134/94‑1 (MQ=60)
                            AAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATG                                                                   <  SRR4302540.6526280/94‑1 (MQ=60)
                             AAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGA                                                                  >  SRR4302540.7251360/1‑94 (MQ=60)
                             AAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGA                                                                  >  SRR4302540.8338482/1‑94 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 >  SRR4302540.1699090/1‑94 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302540.1590266/94‑1 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 >  SRR4302540.2892352/1‑94 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302540.8025700/94‑1 (MQ=60)
                              AGAGTGAATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302540.4565169/94‑1 (MQ=60)
                              AGAATGGATCAAACGTCTGCCGGATAACGCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302540.6041728/94‑1 (MQ=60)
                               GAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACT                                                                >  SRR4302540.3570858/1‑94 (MQ=60)
                               GAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACT                                                                <  SRR4302540.5050207/94‑1 (MQ=60)
                               GAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACT                                                                >  SRR4302540.3798633/1‑94 (MQ=60)
                                AGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTG                                                               >  SRR4302540.5581414/1‑94 (MQ=60)
                                AGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTG                                                               <  SRR4302540.2569663/94‑1 (MQ=60)
                                AGTGGATCAAACGGCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTG                                                               <  SRR4302540.2457864/94‑1 (MQ=60)
                                 GTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGG                                                              >  SRR4302540.815616/1‑94 (MQ=60)
                                  TGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCGATGACTGGA                                                             >  SRR4302540.3262459/1‑94 (MQ=60)
                                  TGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGA                                                             <  SRR4302540.4137340/94‑1 (MQ=60)
                                  TGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGA                                                             <  SRR4302540.2074253/94‑1 (MQ=60)
                                  TGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGA                                                             >  SRR4302540.3262460/1‑94 (MQ=60)
                                  TGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGA                                                             <  SRR4302540.4255226/94‑1 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           <  SRR4302540.9789038/94‑1 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           >  SRR4302540.594458/1‑94 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           <  SRR4302540.4273138/94‑1 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATGGTTTTCCTGGTGCATAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           <  SRR4302540.1991354/94‑1 (MQ=60)
                                     ATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACG                                                          >  SRR4302540.9059979/1‑94 (MQ=60)
                                     ATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACG                                                          <  SRR4302540.14429/94‑1 (MQ=60)
                                     ATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACG                                                          >  SRR4302540.5747488/1‑94 (MQ=60)
                                     ATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACG                                                          <  SRR4302540.9280662/94‑1 (MQ=60)
                                      TCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGA                                                         >  SRR4302540.4038155/1‑94 (MQ=60)
                                      TCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGA                                                         <  SRR4302540.191644/94‑1 (MQ=60)
                                       CAAACGTCTGCCGTATAACTCCGCACCGTACACTTCCACAATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAT                                                        <  SRR4302540.10119852/94‑1 (MQ=60)
                                       CAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAT                                                        <  SRR4302540.9527702/94‑1 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       >  SRR4302540.2474299/1‑94 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       >  SRR4302540.6356442/1‑94 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       <  SRR4302540.5959003/94‑1 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       <  SRR4302540.8788975/94‑1 (MQ=60)
                                         AACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCT                                                      >  SRR4302540.7403461/1‑94 (MQ=60)
                                          ACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTG                                                     >  SRR4302540.6736933/1‑94 (MQ=60)
                                          ACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTG                                                     <  SRR4302540.4797052/94‑1 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    >  SRR4302540.2651046/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   >  SRR4302540.6414810/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   >  SRR4302540.8956082/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGCAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   >  SRR4302540.7786031/1‑94 (MQ=60)
                                             TCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATT                                                  >  SRR4302540.3304050/1‑94 (MQ=60)
                                             TCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATT                                                  <  SRR4302540.6451025/94‑1 (MQ=60)
                                             TCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATT                                                  >  SRR4302540.6302058/1‑94 (MQ=60)
                                             TCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATT                                                  <  SRR4302540.3182791/94‑1 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 <  SRR4302540.2836558/94‑1 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 >  SRR4302540.3823738/1‑94 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 >  SRR4302540.3912926/1‑94 (MQ=60)
                                               TGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAA                                                >  SRR4302540.5944416/1‑94 (MQ=60)
                                                 CCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAC                                              >  SRR4302540.6729260/1‑94 (MQ=60)
                                                 CCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAC                                              >  SRR4302540.6729261/1‑94 (MQ=60)
                                                 CCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAC                                              <  SRR4302540.2424311/94‑1 (MQ=60)
                                                   GGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCG                                            >  SRR4302540.8970392/1‑94 (MQ=60)
                                                   GGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCG                                            >  SRR4302540.6610774/1‑94 (MQ=60)
                                                   GGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCG                                            >  SRR4302540.5837958/1‑94 (MQ=60)
                                                   GGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCG                                            >  SRR4302540.5787059/1‑94 (MQ=60)
                                                    GATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGG                                           >  SRR4302540.702155/1‑94 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302540.18876/1‑94 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302540.6174356/1‑94 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302540.3659334/1‑94 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302540.9586804/1‑94 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302540.686056/1‑94 (MQ=60)
                                                       AACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTG                                        <  SRR4302540.5964623/94‑1 (MQ=60)
                                                        ACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGT                                       <  SRR4302540.2763664/94‑1 (MQ=60)
                                                         CTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTT                                      >  SRR4302540.808384/1‑94 (MQ=60)
                                                         CTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTT                                      >  SRR4302540.1755538/1‑94 (MQ=60)
                                                          TCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTT                                     <  SRR4302540.9833407/94‑1 (MQ=60)
                                                           CCGCTCCGTACACTTCCAGCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACTGGGTGTTTC                                    <  SRR4302540.7884711/94‑1 (MQ=60)
                                                           CCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTG                                    >  SRR4302540.3653912/1‑94 (MQ=60)
                                                           CCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTC                                    >  SRR4302540.7407460/1‑94 (MQ=60)
                                                            CGCACCGTTCACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   <  SRR4302540.2744066/94‑1 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   <  SRR4302540.7919557/94‑1 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   <  SRR4302540.1731010/94‑1 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   <  SRR4302540.9760912/94‑1 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   >  SRR4302540.3893773/1‑94 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   >  SRR4302540.4089832/1‑94 (MQ=60)
                                                             GCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGG                                  >  SRR4302540.1693815/1‑94 (MQ=60)
                                                             GCACCGTACACTTCCACCATTGGTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGtgggtttcgt                                  >  SRR4302540.877406/1‑84 (MQ=60)
                                                              CACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGT                                 >  SRR4302540.385131/1‑94 (MQ=60)
                                                              CACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGG                                 >  SRR4302540.9368546/1‑94 (MQ=60)
                                                               CCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTG                                <  SRR4302540.1549714/94‑1 (MQ=60)
                                                               ACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTG                                <  SRR4302540.9283119/94‑1 (MQ=60)
                                                               ACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTG                                <  SRR4302540.3021674/94‑1 (MQ=60)
                                                                CCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGA                               >  SRR4302540.5785508/1‑94 (MQ=60)
                                                                CCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGA                               >  SRR4302540.7129980/1‑94 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              <  SRR4302540.3256139/94‑1 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              <  SRR4302540.8869478/94‑1 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              >  SRR4302540.7107357/1‑94 (MQ=60)
                                                                  GTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATC                             >  SRR4302540.5210189/1‑94 (MQ=60)
                                                                  GTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATC                             <  SRR4302540.901321/94‑1 (MQ=60)
                                                                   TACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCA                            <  SRR4302540.1420305/94‑1 (MQ=60)
                                                                   TACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCA                            >  SRR4302540.4560239/1‑94 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302540.854047/94‑1 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302540.3588639/94‑1 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           >  SRR4302540.9319156/1‑94 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302540.7171345/94‑1 (MQ=60)
                                                                      CCTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         <  SRR4302540.4497887/94‑1 (MQ=60)
                                                                      ACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         >  SRR4302540.848944/1‑94 (MQ=60)
                                                                      ACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         >  SRR4302540.4189555/1‑94 (MQ=60)
                                                                       CTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCC                        <  SRR4302540.3674770/94‑1 (MQ=60)
                                                                       CTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCC                        >  SRR4302540.9182015/1‑94 (MQ=60)
                                                                       CTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCC                        <  SRR4302540.5201928/94‑1 (MQ=60)
                                                                        TTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCT                       <  SRR4302540.7957271/94‑1 (MQ=60)
                                                                          CCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAA                     >  SRR4302540.3887360/1‑94 (MQ=60)
                                                                          CCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGGGATCACGCCTAA                     >  SRR4302540.3256492/1‑94 (MQ=60)
                                                                           CACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAT                    >  SRR4302540.74862/1‑94 (MQ=60)
                                                                            ACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATC                   >  SRR4302540.6598804/1‑94 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCG                  >  SRR4302540.10008713/1‑94 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCC                  >  SRR4302540.3292810/1‑94 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCC                  >  SRR4302540.3575156/1‑94 (MQ=60)
                                                                              CATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCG                 <  SRR4302540.8097269/94‑1 (MQ=60)
                                                                               ATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGA                >  SRR4302540.1375264/1‑94 (MQ=60)
                                                                               ATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGA                >  SRR4302540.9677184/1‑94 (MQ=60)
                                                                                TTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAA               >  SRR4302540.2432013/1‑94 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGCTCACGCCTAATtcgcaag             >  SRR4302540.9423471/1‑87 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAA             >  SRR4302540.6344505/1‑94 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAA             <  SRR4302540.5703897/94‑1 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAA             <  SRR4302540.5337600/94‑1 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAA             >  SRR4302540.3844803/1‑94 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAG            <  SRR4302540.4942296/94‑1 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAG            <  SRR4302540.3497136/94‑1 (MQ=60)
                                                                                     TTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCT          <  SRR4302540.1383598/94‑1 (MQ=60)
                                                                                     TTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCT          >  SRR4302540.126279/1‑94 (MQ=60)
                                                                                      TCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTC         >  SRR4302540.3336351/1‑94 (MQ=60)
                                                                                      TCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTC         <  SRR4302540.3683622/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302540.9830141/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAAATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302540.8692897/94‑1 (MQ=60)
                                                                                        CTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTG       <  SRR4302540.2895803/94‑1 (MQ=60)
                                                                                        CTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTG       <  SRR4302540.8214534/94‑1 (MQ=60)
                                                                                         TGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG      <  SRR4302540.7832453/94‑1 (MQ=60)
                                                                                         TGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG      <  SRR4302540.8381421/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302540.3194305/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     >  SRR4302540.3529391/1‑94 (MQ=60)
                                                                                           GTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTG    <  SRR4302540.8063861/94‑1 (MQ=60)
                                                                                           GTGCGTAAGGGAAATCCGAAGCAGATCCATGACGGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTG    <  SRR4302540.9565720/94‑1 (MQ=60)
                                                                                             GCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGG  >  SRR4302540.8030450/1‑94 (MQ=60)
                                                                                             GCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  <  SRR4302540.7673778/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  NC_000913/4106680‑4106866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑