Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,194,577	2 bp→GC	coding (97‑98/774 nt)	yjaD →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,194,577	0	C	G	100.0%	1102.7 / NA	343	R33A (CGG→GCG)	yjaD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (83/260); total (83/260)
*	NC_000913	4,194,578	0	G	C	99.7%	1096.3 / ‑5.1	343	R33A (CGG→GCG)	yjaD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (83/259); minor base T (0/1); total (83/260)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01

Only 100 of 358 total aligned reads displayed.

ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC  >  NC_000913/4194490‑4194664

||

ataATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCa                                                                                    >  2:8762235/1‑93 (MQ=255)

 taATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCaa                                                                                   >  2:9830539/1‑93 (MQ=255)

 taATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCaa                                                                                   >  1:797461/1‑93 (MQ=255)

 taATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCaa                                                                                   <  1:77727/93‑1 (MQ=255)

  aaTTGAAAAAGTAGATCACGGCTGGTGGGTCGGCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCaat                                                                                  <  1:228848/93‑2 (MQ=255)

   aTTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAt                                                                                 <  1:5712671/93‑1 (MQ=255)

   aTTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAt                                                                                 <  1:2452312/93‑1 (MQ=255)

   aTTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAt                                                                                 >  1:4367485/1‑93 (MQ=255)

   aTTGAAAAATTAGATCACGGCTGGGGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGATAATTGCCATATGGCGAAGCGGGAAAt                                                                                 >  1:2610367/1‑93 (MQ=255)

      gAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTc                                                                              >  2:5865861/1‑93 (MQ=255)

       aaaaaTTAGATCCCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCg                                                                             <  2:684236/93‑1 (MQ=255)

        aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                            <  2:7430506/93‑1 (MQ=255)

        aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                            <  2:6751848/93‑1 (MQ=255)

          aaTTAGATCACGGCTGGTGGCTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                          <  2:4403766/93‑1 (MQ=255)

           aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                         <  2:9104487/93‑1 (MQ=255)

           aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                         <  1:14708/93‑1 (MQ=255)

              aGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgt                                                                      <  2:7358844/93‑1 (MQ=255)

               gagcACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  2:6051443/90‑1 (MQ=255)

               gATCCCGGCTGGTGTGTAGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  2:9002835/93‑1 (MQ=255)

               gATCACGGCTGTGGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  2:8144862/93‑1 (MQ=255)

               gATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  1:474532/93‑1 (MQ=255)

               gATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     >  1:5643032/1‑93 (MQ=255)

               gATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     >  1:6530113/1‑93 (MQ=255)

                aTCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTgg                                                                    <  1:5113180/93‑1 (MQ=255)

                aTCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTAGATCTTGTgg                                                                    >  2:9625507/1‑93 (MQ=255)

                 tCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGATAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTggg                                                                   <  2:2523054/93‑1 (MQ=255)

                    cGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCa                                                                <  1:9422353/93‑1 (MQ=255)

                    cGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCa                                                                <  1:7106753/93‑1 (MQ=255)

                     ggCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAg                                                               >  1:8364821/1‑93 (MQ=255)

                         ggtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgcg                                                           <  1:9661765/93‑1 (MQ=255)

                         ggtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgcg                                                           >  1:9199753/1‑93 (MQ=255)

                          gtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgcgc                                                          <  1:7253079/93‑1 (MQ=255)

                           tggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCa                                                         <  1:8958035/93‑1 (MQ=255)

                           tggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGAGCTGTGGGGTCAGCGCGCa                                                         >  1:13062/1‑93 (MQ=255)

                           ggggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCa                                                         <  2:3006624/92‑1 (MQ=255)

                             ggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACt                                                       >  2:3932630/1‑93 (MQ=255)

                                cgtcAGCCATGAACAAAAATTATGGTTGCCGCAAGGAGAATTAACATATGGCGAAACAGCACCTTTCGATGTTGTCGGTCCGCCCacacagca                                                    >  2:2654088/1‑89 (MQ=255)

                                cgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACa                                                    <  1:6154587/93‑1 (MQ=255)

                                cgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACa                                                    <  2:3654618/93‑1 (MQ=255)

                                cgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCAAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACa                                                    <  1:42315/93‑1 (MQ=255)

                                  tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  <  2:548523/93‑1 (MQ=255)

                                  tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  <  2:9672784/93‑1 (MQ=255)

                                  tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  >  2:6277419/1‑93 (MQ=255)

                                  tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  <  2:7829797/93‑1 (MQ=255)

                                  gcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  <  1:3410057/92‑1 (MQ=255)

                                  gcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                  <  2:7574891/92‑1 (MQ=255)

                                   aaGCAATGAACGAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATATCGATCTTGTGGGTCGGCGCGCACTACAAAt                                                 <  2:2735702/92‑1 (MQ=255)

                                    aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGACTCTGTGGCTCAGCGCGCACTATAAATc                                                >  2:9544605/1‑93 (MQ=255)

                                      ccATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCgg                                              <  1:9244371/93‑1 (MQ=255)

                                      ccATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCgg                                              >  2:1797308/1‑93 (MQ=255)

                                      ccATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCgg                                              <  2:7050265/93‑1 (MQ=255)

                                         tGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGGGCACTACAAATCgcgga                                           >  1:6399738/1‑89 (MQ=255)

                                         tGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGa                                           >  2:6618131/1‑93 (MQ=255)

                                          gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                          <  1:3750569/93‑1 (MQ=255)

                                          gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                          <  1:5895136/93‑1 (MQ=255)

                                          gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                          <  2:110903/93‑1 (MQ=255)

                                          gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                          <  1:4128653/93‑1 (MQ=255)

                                          gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                          <  1:8149240/93‑1 (MQ=255)

                                           aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCTTATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                         <  2:8406286/93‑1 (MQ=255)

                                           aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                         <  2:4504751/93‑1 (MQ=255)

                                              aaaaaTTATGGTTGCCGAAGCGACAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGc                                      <  2:210804/93‑1 (MQ=255)

                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     >  2:7264614/1‑93 (MQ=255)

                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     <  1:7526623/93‑1 (MQ=255)

                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     <  1:4611139/93‑1 (MQ=255)

                                                aaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAg                                    >  1:3941400/1‑93 (MQ=255)

                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  2:8718813/93‑1 (MQ=255)

                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  2:9720859/93‑1 (MQ=255)

                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  2:3204696/93‑1 (MQ=255)

                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  1:8247949/93‑1 (MQ=255)

                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  1:8645649/93‑1 (MQ=255)

                                                  aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                  <  1:10012806/93‑1 (MQ=255)

                                                   ttATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgggg                                 <  1:7144737/93‑1 (MQ=255)

                                                   ttATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgggg                                 <  2:1204983/93‑1 (MQ=255)

                                                   ttATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgggg                                 <  1:1925092/93‑1 (MQ=255)

                                                       ggTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAc                             <  2:4166736/93‑1 (MQ=255)

                                                         ttGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCt                           <  2:5152302/93‑1 (MQ=255)

                                                         ttGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCt                           <  1:206358/93‑1 (MQ=255)

                                                          tGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTg                          >  1:3156492/1‑93 (MQ=255)

                                                           gCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGt                         <  1:172352/93‑1 (MQ=255)

                                                            ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                        <  2:1017247/93‑1 (MQ=255)

                                                             cGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGttt                       <  1:8762236/93‑1 (MQ=255)

                                                              gAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTg                      <  1:3351912/93‑1 (MQ=255)

                                                                aGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGt                    >  1:6643989/1‑93 (MQ=255)

                                                                 gggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGtt                   <  2:5231204/93‑1 (MQ=255)

                                                                  ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                  <  1:2319264/93‑1 (MQ=255)

                                                                  ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCACGCACTACAAAACGGCGAATGGCAGGGGGAACCTGTTTGGTTa                  <  2:7689563/93‑1 (MQ=255)

                                                                   gagaATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAg                 <  1:1053940/93‑1 (MQ=255)

                                                                       aTTGCCATAGGACGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTaca             <  2:2347458/93‑1 (MQ=255)

                                                                         tGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaac           <  1:1830141/93‑1 (MQ=255)

                                                                          gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca          <  2:780878/93‑1 (MQ=255)

                                                                          gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca          <  2:9308184/93‑1 (MQ=255)

                                                                            cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc        <  2:4749258/93‑1 (MQ=255)

                                                                              tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag      <  1:5349056/93‑1 (MQ=255)

                                                                               atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACagcagc     <  2:1664625/93‑1 (MQ=255)

                                                                               atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAACTGTTTGGTTAGTACAAAagaagc     >  1:6749246/1‑93 (MQ=255)

                                                                                tcgCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGTGCACTACAAATCGGCGAATGGCAGGGGGACCCTGTTTGGTTAGTACAACAGCAgcg    <  2:8495191/91‑1 (MQ=255)

                                                                                tGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcg    <  2:4858792/93‑1 (MQ=255)

                                                                                tGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcg    >  1:5013669/1‑93 (MQ=255)

                                                                                 ggCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcgg   <  1:4516754/93‑1 (MQ=255)

                                                                                 ggCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcgg   <  1:2148608/93‑1 (MQ=255)

||

ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC  >  NC_000913/4194490‑4194664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑CGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  NC_000913/4194485‑4194666

ATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GG                                                                                          >  SRR4302540.6444306/1‑94 (MQ=60)

ATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGGCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑AG                                                                                          >  SRR4302540.687906/1‑94 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGCATTGCCATATGGCGAAGCGG                                                                                         >  SRR4302540.8427107/1‑94 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         <  SRR4302540.5612701/94‑1 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         >  SRR4302540.3561992/1‑94 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         >  SRR4302540.337055/1‑94 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         <  SRR4302540.7264577/94‑1 (MQ=60)

  CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         <  SRR4302540.1703639/94‑1 (MQ=60)

    TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCA                                                                                      >  SRR4302540.2473458/1‑94 (MQ=60)

     ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCATCCATGAACAAAAATTATGGTTGCCGCAGGGAGAATTGCCATATGGGGAA‑GCGGCAA                                                                                     >  SRR4302540.4396262/1‑94 (MQ=60)

     ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAA                                                                                     >  SRR4302540.5616381/1‑94 (MQ=60)

     ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAA                                                                                     >  SRR4302540.9215026/1‑94 (MQ=60)

     ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAA                                                                                     >  SRR4302540.805932/1‑94 (MQ=60)

      TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAA                                                                                    <  SRR4302540.78544/94‑1 (MQ=60)

      TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAA                                                                                    >  SRR4302540.5218224/1‑94 (MQ=60)

      TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAA                                                                                    >  SRR4302540.7215873/1‑94 (MQ=60)

      TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAA                                                                                    <  SRR4302540.931700/94‑1 (MQ=60)

      TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGAGAA‑GCGGCAAA                                                                                    >  SRR4302540.3650983/1‑94 (MQ=60)

       AATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAAT                                                                                   >  SRR4302540.2567236/1‑94 (MQ=60)

       AATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAAT                                                                                   >  SRR4302540.4414944/1‑94 (MQ=60)

       AATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAAT                                                                                   <  SRR4302540.231065/94‑1 (MQ=60)

        ATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATT                                                                                  <  SRR4302540.2478713/94‑1 (MQ=60)

        ATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATT                                                                                  <  SRR4302540.5775555/94‑1 (MQ=60)

          TGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTC                                                                                <  SRR4302540.7000603/94‑1 (MQ=60)

           GAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCG                                                                               >  SRR4302540.5340705/1‑94 (MQ=60)

           GAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCG                                                                               <  SRR4302540.9757273/94‑1 (MQ=60)

             AAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGAT                                                                             <  SRR4302540.5038994/94‑1 (MQ=60)

               AATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCT                                                                           <  SRR4302540.399382/94‑1 (MQ=60)

               AATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCT                                                                           <  SRR4302540.6574768/94‑1 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          >  SRR4302540.10155180/1‑94 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          >  SRR4302540.4465493/1‑94 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          <  SRR4302540.3481159/94‑1 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          <  SRR4302540.5733754/94‑1 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          <  SRR4302540.9173053/94‑1 (MQ=60)

                ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                          <  SRR4302540.14874/94‑1 (MQ=60)

                 TTAGATCTCGACTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTG                                                                         <  SRR4302540.5728362/94‑1 (MQ=60)

                 TTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTG                                                                         >  SRR4302540.5165437/1‑94 (MQ=60)

                 TTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTG                                                                         <  SRR4302540.1437498/94‑1 (MQ=60)

                 TTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTG                                                                         >  SRR4302540.8795104/1‑94 (MQ=60)

                 TTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTG                                                                         <  SRR4302540.6875055/94‑1 (MQ=60)

                  TAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGT                                                                        <  SRR4302540.3871136/94‑1 (MQ=60)

                   AGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTG                                                                       <  SRR4302540.1962590/94‑1 (MQ=60)

                   AGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTG                                                                       >  SRR4302540.5705141/1‑94 (MQ=60)

                   AGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTG                                                                       >  SRR4302540.6602615/1‑94 (MQ=60)

                    GATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGG                                                                      <  SRR4302540.479614/94‑1 (MQ=60)

                     ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGG                                                                     <  SRR4302540.5168526/94‑1 (MQ=60)

                     ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGG                                                                     <  SRR4302540.5819080/94‑1 (MQ=60)

                      TCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGT                                                                    <  SRR4302540.889904/94‑1 (MQ=60)

                      TCACGACTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGT                                                                    <  SRR4302540.2578639/94‑1 (MQ=60)

                       CACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTC                                                                   <  SRR4302540.245374/94‑1 (MQ=60)

                       CACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTC                                                                   <  SRR4302540.9059784/94‑1 (MQ=60)

                         CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAG                                                                 <  SRR4302540.7185833/94‑1 (MQ=60)

                         CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAG                                                                 >  SRR4302540.8461889/1‑94 (MQ=60)

                         CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAG                                                                 <  SRR4302540.9534336/94‑1 (MQ=60)

                         CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTAAG                                                                 <  SRR4302540.9952178/94‑1 (MQ=60)

                          GGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGC                                                                <  SRR4302540.6551997/94‑1 (MQ=60)

                           GCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCG                                                               <  SRR4302540.8447634/94‑1 (MQ=60)

                             TGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCG                                                             >  SRR4302540.9310123/1‑94 (MQ=60)

                              GGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGC                                                            <  SRR4302540.9775496/94‑1 (MQ=60)

                              GGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGC                                                            >  SRR4302540.526723/1‑94 (MQ=60)

                               GTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCA                                                           <  SRR4302540.7334021/94‑1 (MQ=60)

                               GTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGAGCTGTGGGGTCAGCGCGCA                                                           >  SRR4302540.13203/1‑94 (MQ=60)

                                gggctcctcaacagtgaacaacaatgatcgttgccagagcGAGAAATGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.2041905/54‑1 (MQ=54)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTTGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.4528221/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.2041904/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.9063908/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.7693514/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.8100633/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.4056336/94‑1 (MQ=60)

                                TGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAC                                                          <  SRR4302540.6656623/94‑1 (MQ=60)

                                 GGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACT                                                         <  SRR4302540.3301891/94‑1 (MQ=60)

                                  GGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTA                                                        >  SRR4302540.1055287/1‑94 (MQ=60)

                                   GTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTAC                                                       <  SRR4302540.6567215/94‑1 (MQ=60)

                                   GTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTAC                                                       <  SRR4302540.7255651/94‑1 (MQ=60)

                                    TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                      <  SRR4302540.1815843/94‑1 (MQ=60)

                                    TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                      >  SRR4302540.7046123/1‑94 (MQ=60)

                                    TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                      <  SRR4302540.1899571/94‑1 (MQ=60)

                                     CGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAA                                                     <  SRR4302540.2997348/94‑1 (MQ=60)

                                     CGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAA                                                     <  SRR4302540.6223150/94‑1 (MQ=60)

                                     CGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAA                                                     <  SRR4302540.1085798/94‑1 (MQ=60)

                                     CGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAA                                                     >  SRR4302540.9673121/1‑94 (MQ=60)

                                     CGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCAAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAA                                                     <  SRR4302540.42748/94‑1 (MQ=60)

                                       TCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAAT                                                   <  SRR4302540.1856321/94‑1 (MQ=60)

                                       GCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAAT                                                   <  SRR4302540.3447200/94‑1 (MQ=60)

                                        CAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATC                                                  <  SRR4302540.6779317/94‑1 (MQ=60)

                                         AGCCATGAACAAAGATTCTGGTTGCCGATGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 <  SRR4302540.9095153/94‑1 (MQ=60)

                                         AGCCATGAACAAAAATTATGGTTGCCGAAGGGCGAATTGCCATATGGCGAA‑GTGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 <  SRR4302540.1424388/94‑1 (MQ=60)

                                         AGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 <  SRR4302540.8445448/94‑1 (MQ=60)

                                         AGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 <  SRR4302540.9392752/94‑1 (MQ=60)

                                         AGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 >  SRR4302540.8064478/1‑94 (MQ=60)

                                          ACCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGG                                                <  SRR4302540.5738277/94‑1 (MQ=60)

                                           CCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGC                                               <  SRR4302540.9355072/94‑1 (MQ=60)

                                           CCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGC                                               <  SRR4302540.1637357/94‑1 (MQ=60)

                                            CATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCG                                              >  SRR4302540.719025/1‑94 (MQ=60)

                                            CATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCCTGTGGGTCAGCGCGCACTACAAATCCGCG                                              >  SRR4302540.2152237/1‑94 (MQ=60)

                                             ATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGGGCACTACAAATCGcgga                                             >  SRR4302540.6470978/1‑90 (MQ=60)

                                             ATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGA                                             >  SRR4302540.1136492/1‑94 (MQ=60)

                                             ATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGA                                             >  SRR4302540.2096077/1‑94 (MQ=60)

                                              TGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAA                                            >  SRR4302540.829238/1‑94 (MQ=60)

                                              TGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAA                                            >  SRR4302540.7433664/1‑94 (MQ=60)

                                              TGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAA                                            <  SRR4302540.5147163/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.8243839/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.4173277/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.7288565/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.5960242/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.4690188/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.4690187/94‑1 (MQ=60)

                                               GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           <  SRR4302540.3791489/94‑1 (MQ=60)

                                                 ACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGG                                         <  SRR4302540.9417992/94‑1 (MQ=60)

                                                  CAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGC                                        >  SRR4302540.4994784/1‑94 (MQ=60)

                                                   AAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCA                                       <  SRR4302540.8479426/94‑1 (MQ=60)

                                                   AAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCA                                       >  SRR4302540.8255524/1‑94 (MQ=60)

                                                   AAAAATTATGGTCGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCA                                       <  SRR4302540.8479425/94‑1 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      >  SRR4302540.3983976/1‑94 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302540.4004352/94‑1 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302540.7610847/94‑1 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302540.8041082/94‑1 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302540.4660631/94‑1 (MQ=60)

                                                    AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302540.4660632/94‑1 (MQ=60)

                                                     AAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGG                                     <  SRR4302540.7759588/94‑1 (MQ=60)

                                                      AATTATGGTTGGCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302540.7340653/94‑1 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCTCACTACAAATCTTCGAATGGCAGGG                                    >  SRR4302540.6038821/1‑94 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302540.1625285/94‑1 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    >  SRR4302540.7462125/1‑94 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302540.8746083/94‑1 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302540.8343817/94‑1 (MQ=60)

                                                      AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302540.8343818/94‑1 (MQ=60)

                                                       ATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGG                                   <  SRR4302540.10129386/94‑1 (MQ=60)

                                                       ATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGG                                   <  SRR4302540.6291712/94‑1 (MQ=60)

                                                        TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                                  <  SRR4302540.1946078/94‑1 (MQ=60)

                                                        TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                                  <  SRR4302540.6093866/94‑1 (MQ=60)

                                                        TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                                  >  SRR4302540.22974/1‑94 (MQ=60)

                                                        TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                                  <  SRR4302540.7224346/94‑1 (MQ=60)

                                                          ATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAA                                <  SRR4302540.6470373/94‑1 (MQ=60)

                                                           TGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAC                               >  SRR4302540.1743804/1‑94 (MQ=60)

                                                            GGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACC                              <  SRR4302540.2200147/94‑1 (MQ=60)

                                                            GGTTGCCGAAGGGAGAATCGCCATATGGCGAA‑GCGGCAAATTTCAAATTTGTGGGTCAGCGCGCACTACAAGTCGGAGTATGGCCGGGGGAACC                              >  SRR4302540.8873412/1‑94 (MQ=42)

                                                             GTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCT                             <  SRR4302540.1625888/94‑1 (MQ=60)

                                                              TTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGGACCTG                            >  SRR4302540.8047936/1‑94 (MQ=60)

                                                              TTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTG                            >  SRR4302540.3190848/1‑94 (MQ=60)

                                                              TTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTG                            <  SRR4302540.9631766/94‑1 (MQ=60)

                                                              TTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTG                            <  SRR4302540.208383/94‑1 (MQ=60)

                                                               TGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGT                           >  SRR4302540.58755/1‑94 (MQ=60)

                                                                GCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTT                          <  SRR4302540.174072/94‑1 (MQ=60)

                                                                 CCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTT                         >  SRR4302540.988604/1‑94 (MQ=60)

                                                                 CCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTT                         <  SRR4302540.6794575/94‑1 (MQ=60)

                                                                 CCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTT                         <  SRR4302540.3477808/94‑1 (MQ=60)

                                                                  CGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTG                        <  SRR4302540.8863829/94‑1 (MQ=60)

                                                                  CGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTG                        >  SRR4302540.3424376/1‑94 (MQ=60)

                                                                   GAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGG                       >  SRR4302540.5588504/1‑94 (MQ=60)

                                                                   GAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGG                       <  SRR4302540.6644774/94‑1 (MQ=60)

                                                                   GAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGG                       <  SRR4302540.3388654/94‑1 (MQ=60)

                                                                    AAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGT                      <  SRR4302540.2010106/94‑1 (MQ=60)

                                                                    AAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGT                      >  SRR4302540.6717501/1‑94 (MQ=60)

                                                                     AGGGAGAATTTCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTT                     <  SRR4302540.6024457/94‑1 (MQ=60)

                                                                      GGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTA                    <  SRR4302540.6619576/94‑1 (MQ=60)

                                                                      GGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTA                    >  SRR4302540.5114691/1‑94 (MQ=60)

                                                                      GGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGGTTGGTTA                    >  SRR4302540.9313032/1‑94 (MQ=60)

                                                                       GGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAG                   <  SRR4302540.3929526/94‑1 (MQ=60)

                                                                       GGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAG                   <  SRR4302540.3152201/94‑1 (MQ=60)

                                                                       GGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAG                   <  SRR4302540.2344228/94‑1 (MQ=60)

                                                                        GAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGGACCTGTTTGGTTAGT                  >  SRR4302540.9481631/1‑94 (MQ=60)

                                                                        GAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGT                  <  SRR4302540.7239166/94‑1 (MQ=60)

                                                                        GAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGT                  <  SRR4302540.1064669/94‑1 (MQ=60)

                                                                         AGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTA                 >  SRR4302540.1309646/1‑94 (MQ=60)

                                                                         AGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTA                 <  SRR4302540.1895050/94‑1 (MQ=60)

                                                                         AGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTA                 <  SRR4302540.2453123/94‑1 (MQ=60)

                                                                         AGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTA                 >  SRR4302540.2327019/1‑94 (MQ=60)

                                                                          GAATTGCCATATGGCGAA‑GCTGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTAC                <  SRR4302540.2775830/94‑1 (MQ=60)

                                                                           AATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACA               <  SRR4302540.8176059/94‑1 (MQ=60)

                                                                              TGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACA            <  SRR4302540.326904/94‑1 (MQ=60)

                                                                              TGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACA            <  SRR4302540.4239473/94‑1 (MQ=60)

                                                                              TGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACA            <  SRR4302540.4608810/94‑1 (MQ=60)

                                                                              TGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACA            <  SRR4302540.1850164/94‑1 (MQ=60)

                                                                              TGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACA            <  SRR4302540.8830861/94‑1 (MQ=60)

                                                                               GCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG           <  SRR4302540.2179085/94‑1 (MQ=60)

                                                                               GCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG           <  SRR4302540.8670035/94‑1 (MQ=60)

                                                                                CCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGC          >  SRR4302540.4261450/1‑94 (MQ=60)

                                                                                  ATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAG        >  SRR4302540.3401841/1‑94 (MQ=60)

                                                                                  ATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAG        >  SRR4302540.431930/1‑94 (MQ=60)

                                                                                   TATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGC       <  SRR4302540.4606665/94‑1 (MQ=60)

                                                                                   TATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGC       <  SRR4302540.5407750/94‑1 (MQ=60)

                                                                                   TATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGC       <  SRR4302540.8774813/94‑1 (MQ=60)

                                                                                   TATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAACTGTTTGGTTAGTACAAAAGAAGC       >  SRR4302540.6823818/1‑94 (MQ=60)

                                                                                    ATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG      >  SRR4302540.3294371/1‑94 (MQ=60)

                                                                                    ATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG      >  SRR4302540.5067951/1‑94 (MQ=60)

                                                                                     TGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG     <  SRR4302540.4536940/94‑1 (MQ=60)

                                                                                      GGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC    <  SRR4302540.2171711/94‑1 (MQ=60)

                                                                                      GGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC    <  SRR4302540.4565681/94‑1 (MQ=60)

                                                                                      GGCGAA‑GCGGAAAATTTCGATCTTATAGGTCAGCGCGCCCTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGG    <  SRR4302540.9334710/94‑1 (MQ=60)

                                                                                        CGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCTCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  <  SRR4302540.9049321/94‑1 (MQ=60)

                                                                                        CGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  SRR4302540.3849977/1‑94 (MQ=60)

                                                                                        CGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  <  SRR4302540.3077513/94‑1 (MQ=60)

ATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑CGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  NC_000913/4194485‑4194666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`