Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,205,438 T→C intergenic (‑328/‑287) purH ← / → rrsE phosphoribosylaminoimidazolecarboxamideformyltra nsferase/16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,205,4380TC100.0% 1410.9 / NA 450intergenic (‑328/‑287)purH/rrsEphosphoribosylaminoimidazolecarboxamideformyltra nsferase/16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (225/225);  total (225/225)

Only 100 of 477 total aligned reads displayed.

TAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG  >  NC_000913/4205348‑4205512
                                                                                          |                                                                          
taAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCcccc                                                                          >  2:412166/1‑93 (MQ=255)
taAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCcccc                                                                          <  2:4487701/93‑1 (MQ=255)
taAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCcccc                                                                          >  2:9127747/1‑93 (MQ=255)
taAAGCGGGCTTTGGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCcccc                                                                          <  1:4359135/93‑1 (MQ=255)
 aaaGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCa                                                                         >  1:1766672/1‑93 (MQ=255)
 aaaGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCa                                                                         >  2:6961787/1‑93 (MQ=255)
  aaGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCAt                                                                        >  1:367437/1‑93 (MQ=255)
   aGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATc                                                                       >  2:4215186/1‑93 (MQ=255)
   aGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATc                                                                       <  2:7936442/93‑1 (MQ=255)
   aGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATc                                                                       <  2:719282/93‑1 (MQ=255)
    gCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCg                                                                      >  2:2831905/1‑93 (MQ=255)
       ggCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacc                                                                   >  2:3164752/1‑92 (MQ=255)
       ggCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacc                                                                   >  1:3111001/1‑92 (MQ=255)
       ggCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGaca                                                                   <  1:8318547/93‑1 (MQ=255)
       ggCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGaca                                                                   <  2:5330755/93‑1 (MQ=255)
       ggCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGaca                                                                   <  1:1529308/93‑1 (MQ=255)
        gCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacac                                                                  <  1:407409/93‑1 (MQ=255)
        gCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacac                                                                  >  2:2670193/1‑93 (MQ=255)
        gCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacac                                                                  <  1:6843285/93‑1 (MQ=255)
        gCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGacac                                                                  <  2:3246248/93‑1 (MQ=255)
         cTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACAcg                                                                 <  2:5057864/93‑1 (MQ=255)
          ttttGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACAcgg                                                                <  1:542704/93‑1 (MQ=255)
           tttGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACAcggc                                                               >  1:7493691/1‑93 (MQ=255)
              gCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGa                                                            <  2:637352/93‑1 (MQ=255)
                tGGGGAATGTAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGAtg                                                          <  1:2477413/93‑1 (MQ=255)
                 ggggAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGAtgg                                                         >  2:8673760/1‑92 (MQ=255)
                   ggAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGa                                                       >  2:936299/1‑93 (MQ=255)
                   ggAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTCCGGAGAACTTCCTATACTGCCCCCCCACGCACACTGCGGATGCGa                                                       >  1:2809539/1‑93 (MQ=255)
                       tGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCa                                                   >  2:6067586/1‑93 (MQ=255)
                       tGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCa                                                   >  2:4624309/1‑93 (MQ=255)
                        gcagcaGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAc                                                  >  1:5721767/1‑93 (MQ=255)
                        gcagcaGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAc                                                  <  2:5682143/93‑1 (MQ=255)
                        gcagcaGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAc                                                  >  2:7645639/1‑93 (MQ=255)
                        gcagcaGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAc                                                  <  1:1090552/93‑1 (MQ=255)
                         cagcagTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACt                                                 <  2:9845044/93‑1 (MQ=255)
                          agcagTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACtt                                                >  2:5629881/1‑93 (MQ=255)
                             agtcagtcATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcac                                             >  2:8064474/1‑93 (MQ=255)
                             agtcagtcATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTACCTATAATGCGCCCCCGTCGACACGGCGGATGGGAATCACTTcac                                             >  1:5064575/1‑93 (MQ=37)
                              gtcagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcaca                                            >  2:2964092/1‑93 (MQ=255)
                              gtcagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcaca                                            >  1:6948331/1‑93 (MQ=255)
                              gtcagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcaca                                            <  1:3915950/93‑1 (MQ=255)
                              gtcagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcaca                                            >  2:10036309/1‑93 (MQ=255)
                                cagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGGGGTTGTGAATCACTTcaccca                                          >  1:2310774/1‑93 (MQ=25)
                                cagtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTcacaca                                          >  2:1792734/1‑93 (MQ=255)
                                  gtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGGCCCCATCGACACGGCGGATGTGAAGCACTTAACACaaa                                        >  1:5281039/1‑93 (MQ=25)
                                  gtcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACaaa                                        <  1:4174116/93‑1 (MQ=255)
                                   tcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAc                                       <  1:9418927/93‑1 (MQ=255)
                                   tcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAc                                       >  2:3828133/1‑93 (MQ=255)
                                   tcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAc                                       >  2:1571702/1‑93 (MQ=255)
                                   tcaTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAc                                       >  2:6170601/1‑93 (MQ=255)
                                    caTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACa                                      <  1:10007561/93‑1 (MQ=255)
                                    caTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACa                                      <  1:8432889/93‑1 (MQ=255)
                                     aTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAg                                     <  1:9206438/93‑1 (MQ=255)
                                     aTTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAg                                     >  1:4706709/1‑93 (MQ=255)
                                      tttttCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGc                                    >  2:6501862/1‑93 (MQ=255)
                                       ttttCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCCCACAAACAGcc                                   >  1:6598415/1‑93 (MQ=255)
                                       ttttCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGcc                                   >  2:1186951/1‑93 (MQ=255)
                                        tttCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcg                                  <  2:5458468/93‑1 (MQ=255)
                                         ttCTGCAATTTTTCTATTGCGGCCTGCGGAGACCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcgg                                 <  1:4811851/93‑1 (MQ=255)
                                         ttCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcgg                                 >  2:3377162/1‑93 (MQ=255)
                                          tCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggt                                >  1:2222486/1‑93 (MQ=255)
                                            tGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggttc                              <  2:6276922/93‑1 (MQ=255)
                                            tGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggttc                              <  1:8888521/93‑1 (MQ=255)
                                               aaTTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggttcggt                           <  1:7766641/93‑1 (MQ=255)
                                                aTTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggttcggtt                          <  2:7067243/93‑1 (MQ=255)
                                                aTTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCcggttcggtt                          <  1:3306097/93‑1 (MQ=255)
                                                  ttttCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGa                        <  1:6696398/93‑1 (MQ=255)
                                                  ttttCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGa                        <  1:8582493/93‑1 (MQ=255)
                                                   tttCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGaa                       <  2:5878377/93‑1 (MQ=255)
                                                   tttCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGaa                       <  1:3809036/93‑1 (MQ=255)
                                                     tCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAaga                     <  2:433306/93‑1 (MQ=255)
                                                     tCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAaga                     >  1:1299193/1‑93 (MQ=255)
                                                      cTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAagag                    <  2:7425070/93‑1 (MQ=255)
                                                       tATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAgaga                   <  2:5202698/93‑1 (MQ=255)
                                                       tATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAgaga                   >  1:8119961/1‑93 (MQ=255)
                                                        aTTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGaa                  >  1:9630253/1‑93 (MQ=255)
                                                        aTTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGaa                  >  1:9019581/1‑93 (MQ=255)
                                                           gCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGaaaaa               <  1:2690303/93‑1 (MQ=255)
                                                             ggCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATc             >  2:1202326/1‑93 (MQ=255)
                                                              gCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATcc            <  1:5906642/93‑1 (MQ=255)
                                                                 tGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGa         <  2:9077827/93‑1 (MQ=255)
                                                                 tGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGa         >  2:3622006/1‑93 (MQ=255)
                                                                  gCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGaa        <  1:9502049/93‑1 (MQ=255)
                                                                  gCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGaa        <  2:2550845/93‑1 (MQ=255)
                                                                  gCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGaa        <  2:2415700/93‑1 (MQ=255)
                                                                   cGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGaaa       <  2:1425736/93‑1 (MQ=37)
                                                                    ggAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAAt      <  1:7933864/93‑1 (MQ=25)
                                                                     gagaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAAtt     <  2:1928069/93‑1 (MQ=21)
                                                                     gagaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAAtt     <  2:9478657/93‑1 (MQ=21)
                                                                     gagaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAAtt     >  2:8277443/1‑93 (MQ=21)
                                                                      agaACTCCCTATAATGCGCCCCCATCGACAAGGCGGATGTGAATCACTTCACACAAACAGCCGGCTCGGTTGAAGAGAAAAATCCTGAAATTc    >  1:9901607/1‑93 (MQ=255)
                                                                       gaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCa   <  2:4719760/93‑1 (MQ=17)
                                                                       gaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCa   <  1:6372023/93‑1 (MQ=17)
                                                                       gaACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCa   >  2:8849308/1‑93 (MQ=17)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  >  2:4858411/1‑93 (MQ=14)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  <  1:8674872/93‑1 (MQ=14)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  >  1:3751082/1‑93 (MQ=14)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  >  2:6677673/1‑93 (MQ=14)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  <  1:7278008/93‑1 (MQ=14)
                                                                        aaCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAg  >  1:6127203/1‑93 (MQ=14)
                                                                                          |                                                                          
TAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG  >  NC_000913/4205348‑4205512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 307 total aligned reads displayed.
GTATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGA  >  NC_000913/4205345‑4205531
                                                                                             |                                                                                             
GTATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCC                                                                                               >  SRR4302540.8865925/1‑94 (MQ=60)
  ATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCC                                                                                             >  SRR4302540.3195141/1‑94 (MQ=60)
  ATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCC                                                                                             >  SRR4302540.5517985/1‑94 (MQ=60)
  ATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCC                                                                                             >  SRR4302540.7427370/1‑94 (MQ=60)
   TAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCA                                                                                            >  SRR4302540.5996698/1‑94 (MQ=60)
   TAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATGGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCA                                                                                            <  SRR4302540.1261161/94‑1 (MQ=60)
    AAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCAT                                                                                           >  SRR4302540.371224/1‑94 (MQ=60)
     AAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATC                                                                                          >  SRR4302540.1509386/1‑94 (MQ=60)
     AAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATC                                                                                          >  SRR4302540.8069051/1‑94 (MQ=60)
     AAGCGGGATTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATC                                                                                          >  SRR4302540.666619/1‑94 (MQ=60)
      AGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCG                                                                                         >  SRR4302540.232034/1‑94 (MQ=60)
        CGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGAC                                                                                       >  SRR4302540.8645543/1‑94 (MQ=60)
        CGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGAC                                                                                       >  SRR4302540.10037427/1‑94 (MQ=60)
        CGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGAC                                                                                       <  SRR4302540.9444595/94‑1 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTTCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      <  SRR4302540.2756407/94‑1 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACC                                                                                      >  SRR4302540.3145031/1‑94 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      >  SRR4302540.8005161/1‑94 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      <  SRR4302540.3276465/94‑1 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      >  SRR4302540.3822199/1‑94 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      >  SRR4302540.5326926/1‑94 (MQ=60)
         GGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACA                                                                                      >  SRR4302540.9314189/1‑94 (MQ=60)
          GGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACAC                                                                                     <  SRR4302540.8415112/94‑1 (MQ=60)
          GGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACAC                                                                                     <  SRR4302540.8415111/94‑1 (MQ=60)
           GCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACG                                                                                    <  SRR4302540.411670/94‑1 (MQ=60)
           GCTTTGTCTGGGGAATGCAGCAGTCAGTGATGTTTCTGCAATTTTTCTATTGCGGCATGCGGAGAACTCCCTATAATGCGCCCCCATCGACACG                                                                                    <  SRR4302540.411671/94‑1 (MQ=60)
            CTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGG                                                                                   >  SRR4302540.3850571/1‑94 (MQ=60)
             TTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGC                                                                                  >  SRR4302540.7577383/1‑94 (MQ=60)
             TTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGC                                                                                  <  SRR4302540.548573/94‑1 (MQ=60)
              TTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCG                                                                                 <  SRR4302540.8693898/94‑1 (MQ=60)
              TTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCG                                                                                 <  SRR4302540.5457606/94‑1 (MQ=60)
              TTGGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACGCCCTATAATGCGCCCCCATCGACACGGCG                                                                                 <  SRR4302540.5457607/94‑1 (MQ=60)
               TTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGG                                                                                <  SRR4302540.1110339/94‑1 (MQ=60)
                TGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGA                                                                               >  SRR4302540.6751787/1‑94 (MQ=60)
                 GCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGAT                                                                              <  SRR4302540.7274972/94‑1 (MQ=60)
                  GTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATG                                                                             <  SRR4302540.5205541/94‑1 (MQ=60)
                  CTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATG                                                                             >  SRR4302540.6869904/1‑94 (MQ=60)
                  CTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATG                                                                             >  SRR4302540.6869903/1‑94 (MQ=60)
                  CTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATG                                                                             >  SRR4302540.7023805/1‑94 (MQ=60)
                   TGGGGAATGTAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGT                                                                            <  SRR4302540.2504090/94‑1 (MQ=60)
                   TGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGT                                                                            >  SRR4302540.8197545/1‑94 (MQ=60)
                   TGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGT                                                                            <  SRR4302540.3805595/94‑1 (MQ=60)
                     GGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGA                                                                          <  SRR4302540.2293911/94‑1 (MQ=60)
                      GGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAA                                                                         <  SRR4302540.4161812/94‑1 (MQ=60)
                       GAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAAT                                                                        >  SRR4302540.4605232/1‑94 (MQ=60)
                       GAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAAT                                                                        <  SRR4302540.8749337/94‑1 (MQ=60)
                         ATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCA                                                                      >  SRR4302540.9113174/1‑94 (MQ=60)
                          TGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAC                                                                     >  SRR4302540.1554813/1‑94 (MQ=60)
                           GCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACT                                                                    >  SRR4302540.5696386/1‑94 (MQ=60)
                            CAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTT                                                                   <  SRR4302540.6334250/94‑1 (MQ=60)
                            CAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTT                                                                   <  SRR4302540.6381949/94‑1 (MQ=60)
                             AGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTC                                                                  >  SRR4302540.5542248/1‑94 (MQ=60)
                              GCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCA                                                                 <  SRR4302540.6866888/94‑1 (MQ=60)
                               CAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGGCCCCATCGACACGGCGGATGTGAATCCCATCAC                                                                >  SRR4302540.3982153/1‑94 (MQ=60)
                               CAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCAC                                                                >  SRR4302540.2379260/1‑94 (MQ=60)
                               CAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTACCTATAATGCGCCCCCGTCGACACGGCGGATGGGAATCACTTCAC                                                                >  SRR4302540.5119334/1‑94 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               >  SRR4302540.5619886/1‑94 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               >  SRR4302540.6168147/1‑94 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               >  SRR4302540.5037271/1‑94 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               <  SRR4302540.3743104/94‑1 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               <  SRR4302540.6692152/94‑1 (MQ=60)
                                AGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACA                                                               >  SRR4302540.899408/1‑94 (MQ=60)
                                 GTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCCCAC                                                              >  SRR4302540.6460832/1‑94 (MQ=60)
                                 GTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACAC                                                              <  SRR4302540.2920346/94‑1 (MQ=60)
                                 GTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACAC                                                              >  SRR4302540.8508781/1‑94 (MQ=60)
                                 GTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCAATTCACAC                                                              >  SRR4302540.50100/1‑94 (MQ=60)
                                   CAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAA                                                            <  SRR4302540.1865876/94‑1 (MQ=60)
                                    AGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGGCCCCATCGACACGGCGGATGTGAAGCACTTAACACAAA                                                           >  SRR4302540.5338722/1‑94 (MQ=60)
                                    AGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACCAA                                                           >  SRR4302540.4857508/1‑94 (MQ=60)
                                     GTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAC                                                          <  SRR4302540.1068799/94‑1 (MQ=60)
                                     GTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAC                                                          >  SRR4302540.9540442/1‑94 (MQ=60)
                                     GTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAAC                                                          <  SRR4302540.4219409/94‑1 (MQ=60)
                                      TCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACA                                                         <  SRR4302540.9530882/94‑1 (MQ=60)
                                      TCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACA                                                         <  SRR4302540.5798193/94‑1 (MQ=60)
                                      TCATTTTTCTGCAATTTTTCTATTGCCGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACA                                                         <  SRR4302540.5798192/94‑1 (MQ=60)
                                       CATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGGACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCCCACAAACAG                                                        >  SRR4302540.906831/1‑94 (MQ=60)
                                       CATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACCCAAACAG                                                        >  SRR4302540.975140/1‑94 (MQ=60)
                                       CATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAG                                                        <  SRR4302540.8530788/94‑1 (MQ=60)
                                       CATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAG                                                        <  SRR4302540.10124111/94‑1 (MQ=60)
                                       CATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAG                                                        >  SRR4302540.4757005/1‑94 (MQ=60)
                                        ATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGC                                                       >  SRR4302540.1865538/1‑94 (MQ=60)
                                        ATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGC                                                       <  SRR4302540.9316910/94‑1 (MQ=60)
                                        ATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGC                                                       >  SRR4302540.9868277/1‑94 (MQ=60)
                                        ATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGC                                                       <  SRR4302540.3775163/94‑1 (MQ=60)
                                         TTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCC                                                      <  SRR4302540.2396189/94‑1 (MQ=60)
                                         TTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCC                                                      <  SRR4302540.8241104/94‑1 (MQ=60)
                                          TTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCG                                                     >  SRR4302540.7628328/1‑94 (MQ=60)
                                          TTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCG                                                     <  SRR4302540.9683996/94‑1 (MQ=60)
                                          TTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCG                                                     <  SRR4302540.9585388/94‑1 (MQ=60)
                                            tgcgGCAATTGTTCTATTGCGGCCTGCGGAGAACTCCCTAGAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   <  SRR4302540.3899453/90‑1 (MQ=54)
                                            TTCTTCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCTCTTCACACAAACAGCCGGT                                                   <  SRR4302540.2419413/94‑1 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGACCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   <  SRR4302540.4863354/94‑1 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACACACAGCCGGT                                                   >  SRR4302540.918180/1‑94 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   >  SRR4302540.2246444/1‑94 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   >  SRR4302540.4535049/1‑94 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   >  SRR4302540.4349657/1‑94 (MQ=60)
                                            TTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGT                                                   <  SRR4302540.3899452/94‑1 (MQ=60)
                                             TCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTT                                                  >  SRR4302540.2797255/1‑94 (MQ=60)
                                              CTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAccagcgcgttg                                                 >  SRR4302540.2559307/1‑83 (MQ=60)
                                              CTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCAGGTTA                                                 >  SRR4302540.2559308/1‑94 (MQ=60)
                                               TGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCG                                                <  SRR4302540.1561965/94‑1 (MQ=60)
                                               TGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCG                                                <  SRR4302540.2586669/94‑1 (MQ=60)
                                                GCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGG                                               <  SRR4302540.8839260/94‑1 (MQ=60)
                                                  AATTTTTCTATTGCGGCCTTCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTT                                             <  SRR4302540.7857440/94‑1 (MQ=51)
                                                  AATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTT                                             <  SRR4302540.7857439/94‑1 (MQ=60)
                                                   ATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTG                                            <  SRR4302540.1215537/94‑1 (MQ=60)
                                                   ATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTG                                            <  SRR4302540.3342301/94‑1 (MQ=60)
                                                    TTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCGCACAAACAGCCGGTTCGGTTGA                                           >  SRR4302540.2886973/1‑94 (MQ=58)
                                                    TTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGA                                           <  SRR4302540.4609657/94‑1 (MQ=60)
                                                    TTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGA                                           >  SRR4302540.4583208/1‑94 (MQ=60)
                                                     TTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATGACTTCACACAAACAGCCGGgttggttgat                                          >  SRR4302540.8295989/1‑84 (MQ=58)
                                                     TTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAA                                          >  SRR4302540.131339/1‑94 (MQ=58)
                                                     TTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAA                                          <  SRR4302540.6770318/94‑1 (MQ=58)
                                                     TTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAA                                          <  SRR4302540.8682264/94‑1 (MQ=58)
                                                     TTTTCTATTGCGCCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAA                                          <  SRR4302540.8890308/94‑1 (MQ=43)
                                                      TTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAG                                         <  SRR4302540.3850519/94‑1 (MQ=55)
                                                       TTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGA                                        >  SRR4302540.4263290/1‑94 (MQ=53)
                                                       TTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGATCGGTTGAAGA                                        >  SRR4302540.476039/1‑94 (MQ=51)
                                                        TCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAG                                       <  SRR4302540.8825020/94‑1 (MQ=50)
                                                         CTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCAGACAAACAGCCGGTTCGGTTCACGAGA                                      >  SRR4302540.6975543/1‑94 (MQ=43)
                                                         CTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGA                                      >  SRR4302540.8071079/1‑94 (MQ=48)
                                                         CTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGA                                      >  SRR4302540.6744073/1‑94 (MQ=48)
                                                         CTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGA                                      >  SRR4302540.8214195/1‑94 (MQ=48)
                                                         CTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGA                                      >  SRR4302540.3338431/1‑94 (MQ=48)
                                                          TATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAA                                     <  SRR4302540.3517402/94‑1 (MQ=45)
                                                          TATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAA                                     >  SRR4302540.9743731/1‑94 (MQ=45)
                                                          TATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAA                                     >  SRR4302540.9127811/1‑94 (MQ=45)
                                                             TGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAA                                  >  SRR4302540.1418815/1‑94 (MQ=38)
                                                             TGCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAA                                  >  SRR4302540.102161/1‑94 (MQ=38)
                                                              GCGGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAAT                                 <  SRR4302540.2719369/94‑1 (MQ=35)
                                                                GGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCC                               <  SRR4302540.7631548/94‑1 (MQ=30)
                                                                GGCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCC                               <  SRR4302540.8544488/94‑1 (MQ=30)
                                                                 GCCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCT                              <  SRR4302540.2252589/94‑1 (MQ=28)
                                                                  GCTGCGGAGAACTCCGTATAATGTCCCCCCATCGACCCGGCGGATCTCAATCCCTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTG                             <  SRR4302540.1771958/94‑1 (MQ=10)
                                                                  CCTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTG                             <  SRR4302540.1771959/94‑1 (MQ=25)
                                                                   CTGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGA                            >  SRR4302540.740919/1‑94 (MQ=23)
                                                                    TGCGGAGACCTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAA                           <  SRR4302540.2981633/94‑1 (MQ=7)
                                                                    TGCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAA                           >  SRR4302540.10049805/1‑94 (MQ=20)
                                                                     GCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAA                          <  SRR4302540.4090506/94‑1 (MQ=15)
                                                                     GCGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAA                          <  SRR4302540.9614643/94‑1 (MQ=15)
                                                                     GCGAAGAACGCCCTATAATGCGCCCCCATCGACGCGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAA                          <  SRR4302540.9614644/94‑1 (MQ=0)
                                                                      CGGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAAT                         <  SRR4302540.7157754/94‑1 (MQ=12)
                                                                       GGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATT                        >  SRR4302540.8223551/1‑94 (MQ=10)
                                                                       GGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATT                        >  SRR4302540.7092911/1‑94 (MQ=10)
                                                                       GGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATT                        >  SRR4302540.2594223/1‑94 (MQ=10)
                                                                       GGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATT                        <  SRR4302540.8026337/94‑1 (MQ=10)
                                                                       CGAGAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATT                        <  SRR4302540.3576777/94‑1 (MQ=7)
                                                                        GAGAACTCCCTATAATGCGCCCCCATCGACAAGGCGGATGTGAATCACTTCACACAAACAGCCGGCTCGGTTGAAGAGAAAAATCCTGAAATTC                       >  SRR4302540.10017285/1‑94 (MQ=6)
                                                                          GAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG                     <  SRR4302540.6442973/94‑1 (MQ=2)
                                                                          GAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG                     >  SRR4302540.5893626/1‑94 (MQ=2)
                                                                          GAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG                     <  SRR4302540.9268334/94‑1 (MQ=2)
                                                                          GAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG                     >  SRR4302540.3792007/1‑94 (MQ=2)
                                                                          GAACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAG                     <  SRR4302540.6080184/94‑1 (MQ=2)
                                                                           AACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCTTGAAATTCAGG                    >  SRR4302540.8365121/1‑94 (MQ=0)
                                                                           AACTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGG                    <  SRR4302540.7359212/94‑1 (MQ=0)
                                                                            ACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGG                   <  SRR4302540.9704075/94‑1 (MQ=0)
                                                                             CTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGT                  >  SRR4302540.2652711/1‑94 (MQ=0)
                                                                             CTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGT                  <  SRR4302540.6512101/94‑1 (MQ=0)
                                                                             CTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGT                  <  SRR4302540.1464420/94‑1 (MQ=0)
                                                                             CTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGT                  <  SRR4302540.3515746/94‑1 (MQ=0)
                                                                             CTCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGT                  >  SRR4302540.627951/1‑94 (MQ=0)
                                                                              TCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATTCTGAAATTCAGGGTT                 >  SRR4302540.8468034/1‑94 (MQ=0)
                                                                              TCCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTT                 >  SRR4302540.4443404/1‑94 (MQ=0)
                                                                              TCCCTATAAGGCGCCTCCAGCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTT                 <  SRR4302540.2209305/94‑1 (MQ=0)
                                                                              CCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTT                 <  SRR4302540.3568247/94‑1 (MQ=0)
                                                                               CCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                >  SRR4302540.6603544/1‑94 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                >  SRR4302540.4814291/1‑94 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                <  SRR4302540.6949663/94‑1 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                <  SRR4302540.8936708/94‑1 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                >  SRR4302540.6688041/1‑94 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                <  SRR4302540.1103558/94‑1 (MQ=0)
                                                                               CCCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTG                >  SRR4302540.5875781/1‑94 (MQ=0)
                                                                                CCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGA               >  SRR4302540.8552517/1‑94 (MQ=0)
                                                                                CCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGA               >  SRR4302540.8496813/1‑94 (MQ=0)
                                                                                CCTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGA               >  SRR4302540.2009035/1‑94 (MQ=0)
                                                                                 CTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCAGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGAC              <  SRR4302540.7295371/94‑1 (MQ=0)
                                                                                 CTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGAC              >  SRR4302540.8971618/1‑94 (MQ=0)
                                                                                 CTATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGAC              <  SRR4302540.953461/94‑1 (MQ=0)
                                                                                 CTATAACGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGAC              <  SRR4302540.2663751/94‑1 (MQ=0)
                                                                                  TATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACT             <  SRR4302540.1355257/94‑1 (MQ=0)
                                                                                  TATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACT             >  SRR4302540.4365606/1‑94 (MQ=0)
                                                                                   ATAATGCGCCCCCATCGGCACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTC            <  SRR4302540.1219238/94‑1 (MQ=0)
                                                                                   ATAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTC            >  SRR4302540.4058320/1‑94 (MQ=0)
                                                                                    TAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCT           <  SRR4302540.5086342/94‑1 (MQ=0)
                                                                                    TAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCT           <  SRR4302540.8615743/94‑1 (MQ=0)
                                                                                    TAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAGGAGAAAAATCCTGAAATTCAGGGTTGACTCT           >  SRR4302540.8659124/1‑94 (MQ=0)
                                                                                    TAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCT           >  SRR4302540.6153029/1‑94 (MQ=0)
                                                                                    TAATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCT           >  SRR4302540.3713099/1‑94 (MQ=0)
                                                                                      ATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGA         >  SRR4302540.8844731/1‑94 (MQ=0)
                                                                                      ATGCGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGA         <  SRR4302540.7701826/94‑1 (MQ=0)
                                                                                         CGCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAG      >  SRR4302540.8600641/1‑94 (MQ=0)
                                                                                          GCCCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGA     <  SRR4302540.3970072/94‑1 (MQ=0)
                                                                                           CCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAG    >  SRR4302540.8997766/1‑94 (MQ=0)
                                                                                           CCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAG    >  SRR4302540.7517225/1‑94 (MQ=0)
                                                                                           CCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAG    <  SRR4302540.4665925/94‑1 (MQ=0)
                                                                                           CCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAG    >  SRR4302540.5211062/1‑94 (MQ=0)
                                                                                            CTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGG   >  SRR4302540.9446268/1‑94 (MQ=0)
                                                                                            CTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGG   >  SRR4302540.7401716/1‑94 (MQ=0)
                                                                                            CCCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGG   <  SRR4302540.2511155/94‑1 (MQ=0)
                                                                                             TCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGA  >  SRR4302540.1254345/1‑94 (MQ=0)
                                                                                             CCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGA  >  SRR4302540.6583060/1‑94 (MQ=0)
                                                                                             |                                                                                             
GTATAAAGCGGGCTTTTGCTGGGGAATGCAGCAGTCAGTCATTTTTCTGCAATTTTTCTATTGCGGCCTGCGGAGAACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGA  >  NC_000913/4205345‑4205531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑