Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA  >  NC_000913/631149‑631334
                                                                                             |                                                                                             
CGAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGT                                                                                              <  SRR4302540.6042465/94‑1 (MQ=60)
  AAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGT                                                                                            >  SRR4302540.6536724/1‑94 (MQ=60)
   AAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTG                                                                                          <  SRR4302540.9948892/94‑1 (MQ=60)
    AGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTG                                                                                          <  SRR4302540.9645379/94‑1 (MQ=60)
      AAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGG                                                                                        >  SRR4302540.4198595/1‑94 (MQ=60)
      AAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGC                                                                                        <  SRR4302540.9643930/94‑1 (MQ=60)
       AACGCCGTATGAACCAATGCCAGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGAGA‑GGGGGGGGGGTTGGCG                                                                                       >  SRR4302540.7988535/1‑94 (MQ=60)
         CGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAAT                                                                                    <  SRR4302540.2001730/94‑1 (MQ=60)
         CGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑GGTTGGCGAAT                                                                                    >  SRR4302540.7321040/1‑94 (MQ=60)
           CCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATG                                                                                   <  SRR4302540.6841514/94‑1 (MQ=60)
            CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGT                                                                                  <  SRR4302540.9833690/94‑1 (MQ=60)
            CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGT                                                                                  <  SRR4302540.7148571/94‑1 (MQ=60)
            CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGT                                                                                  >  SRR4302540.3291255/1‑94 (MQ=60)
            CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTT                                                                                 <  SRR4302540.8862018/94‑1 (MQ=60)
             GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTT                                                                                 >  SRR4302540.1185345/1‑94 (MQ=60)
             GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTT                                                                                 <  SRR4302540.2334239/94‑1 (MQ=60)
              TATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTG                                                                                <  SRR4302540.6128589/94‑1 (MQ=60)
               ATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGG                                                                               <  SRR4302540.2673962/94‑1 (MQ=60)
               ATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGC                                                                              >  SRR4302540.7603831/1‑94 (MQ=60)
                TGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCT                                                                             <  SRR4302540.1401086/94‑1 (MQ=60)
                 GAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTT                                                                            <  SRR4302540.5471467/94‑1 (MQ=60)
                   ACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAG                                                                          <  SRR4302540.6289589/94‑1 (MQ=60)
                   ACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAG                                                                          <  SRR4302540.6289587/94‑1 (MQ=60)
                   ACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAAGCGCACACTAAAGTCCGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTG                                                                           >  SRR4302540.3988914/1‑94 (MQ=60)
                    ACAATGGCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGT                                                                         <  SRR4302540.7080329/94‑1 (MQ=60)
                     CAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGT                                                                         <  SRR4302540.5538291/94‑1 (MQ=60)
                     CAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGT                                                                         <  SRR4302540.8084955/94‑1 (MQ=60)
                     CAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTG                                                                        >  SRR4302540.8206023/1‑94 (MQ=60)
                     CAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTG                                                                        >  SRR4302540.4953029/1‑94 (MQ=60)
                       ATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGC                                                                       >  SRR4302540.3281375/1‑94 (MQ=60)
                       ATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGC                                                                       >  SRR4302540.9319038/1‑94 (MQ=60)
                        TGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCC                                                                     >  SRR4302540.2224750/1‑94 (MQ=60)
                          CCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCA                                                                    >  SRR4302540.1867201/1‑94 (MQ=60)
                          CCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGGGTTGGCGAATGTTGGCTTAGTGCCag                                                                    >  SRR4302540.8223788/1‑92 (MQ=60)
                          CCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAG                                                                   <  SRR4302540.9624461/94‑1 (MQ=60)
                          CCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAG                                                                   >  SRR4302540.8387466/1‑94 (MQ=60)
                          CCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAG                                                                   <  SRR4302540.4547048/94‑1 (MQ=60)
                           CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAG                                                                   >  SRR4302540.2861251/1‑94 (MQ=60)
                           CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAG                                                                   >  SRR4302540.2861252/1‑94 (MQ=60)
                           CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGG                                                                  >  SRR4302540.9848533/1‑94 (MQ=60)
                            GGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGG                                                                 >  SRR4302540.1718475/1‑94 (MQ=60)
                             GAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGT                                                                >  SRR4302540.9633339/1‑94 (MQ=60)
                             GAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGT                                                                <  SRR4302540.4348829/94‑1 (MQ=60)
                             GAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGT                                                                >  SRR4302540.3296679/1‑94 (MQ=60)
                              AAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGT                                                                >  SRR4302540.2653104/1‑94 (MQ=60)
                              AAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTT                                                               <  SRR4302540.4659451/94‑1 (MQ=60)
                                 gcgcttAGGAGATCGTGTCGCAGGCAAAAGGCGCCCACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCC                                                             <  SRR4302540.9736429/88‑1 (MQ=60)
                                 gcgcttAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCC                                                             <  SRR4302540.4435232/88‑1 (MQ=60)
                                  TGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCT                                                           <  SRR4302540.8972449/94‑1 (MQ=60)
                                   GTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGGGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCT                                                           >  SRR4302540.1956222/1‑94 (MQ=60)
                                    TCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCT                                                         <  SRR4302540.9734340/94‑1 (MQ=60)
                                     CGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCT                                                         >  SRR4302540.22646/1‑94 (MQ=60)
                                     CGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTC                                                        >  SRR4302540.3019054/1‑94 (MQ=60)
                                      GAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTC                                                        >  SRR4302540.828646/1‑94 (MQ=60)
                                      GAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCA                                                       <  SRR4302540.3055656/94‑1 (MQ=60)
                                        GGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCAC                                                      >  SRR4302540.10069261/1‑94 (MQ=60)
                                         GAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCC                                                    >  SRR4302540.3599379/1‑94 (MQ=60)
                                          AGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCT                                                   <  SRR4302540.4621506/94‑1 (MQ=60)
                                           GATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCT                                                   >  SRR4302540.9168562/1‑94 (MQ=60)
                                           GATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTA                                                  >  SRR4302540.4158283/1‑94 (MQ=60)
                                             TCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAAC                                                >  SRR4302540.7183333/1‑94 (MQ=60)
                                               GTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACC                                               >  SRR4302540.3703513/1‑94 (MQ=60)
                                               GTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACC                                               >  SRR4302540.6742223/1‑94 (MQ=60)
                                               GTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCT                                              >  SRR4302540.1982922/1‑94 (MQ=60)
                                               GTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCC                                              <  SRR4302540.6534796/94‑1 (MQ=60)
                                               GTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCC                                              >  SRR4302540.4405763/1‑94 (MQ=60)
                                                TGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCC                                              <  SRR4302540.7094090/94‑1 (MQ=60)
                                                TGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCT                                             <  SRR4302540.5927174/94‑1 (MQ=60)
                                                TGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCT                                             >  SRR4302540.9678262/1‑94 (MQ=60)
                                                TGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCT                                             >  SRR4302540.9678263/1‑94 (MQ=60)
                                                     CAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCC                                        >  SRR4302540.3715487/1‑94 (MQ=60)
                                                      AGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCC                                       >  SRR4302540.10092389/1‑94 (MQ=60)
                                                        GCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGG                                     >  SRR4302540.2494779/1‑94 (MQ=60)
                                                         CAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGG                                     >  SRR4302540.181243/1‑94 (MQ=60)
                                                         CAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGGGTTGGCGAATGTTGGCTTAGCGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGG                                     >  SRR4302540.181244/1‑94 (MQ=60)
                                                         CAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGT                                    <  SRR4302540.6845749/94‑1 (MQ=60)
                                                         CAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGG                                    >  SRR4302540.2033203/1‑94 (MQ=60)
                                                          AAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGGGGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGG                                    >  SRR4302540.41413/1‑94 (MQ=60)
                                                          AAAAGGAGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGCTG                                   >  SRR4302540.1450778/1‑94 (MQ=60)
                                                           AAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGG                                  >  SRR4302540.6767713/1‑94 (MQ=60)
                                                           AAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGG                                  >  SRR4302540.7251488/1‑94 (MQ=60)
                                                            AAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGG                                 <  SRR4302540.276817/94‑1 (MQ=60)
                                                             AGGCGCACACTAAAGTCAGAGTGA‑GGGGGGG‑GGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGG                                >  SRR4302540.1412128/1‑94 (MQ=60)
                                                               GCGCACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGC                               <  SRR4302540.5867784/94‑1 (MQ=60)
                                                                CGCACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGG                             >  SRR4302540.5844384/1‑94 (MQ=60)
                                                                  CACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG                           >  SRR4302540.7990337/1‑94 (MQ=60)
                                                                  CACACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG                           <  SRR4302540.6983212/94‑1 (MQ=60)
                                                                   ACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG                           >  SRR4302540.6999514/1‑94 (MQ=60)
                                                                   ACACTAAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG                           >  SRR4302540.6999519/1‑94 (MQ=60)
                                                                    CACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGG                         >  SRR4302540.9404614/1‑94 (MQ=60)
                                                                    CACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGG                         >  SRR4302540.3378842/1‑94 (MQ=60)
                                                                    CACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGG                         >  SRR4302540.1469722/1‑94 (MQ=60)
                                                                     ACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGA                        <  SRR4302540.1579227/94‑1 (MQ=60)
                                                                     ACTAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGA                        >  SRR4302540.6897644/1‑94 (MQ=60)
                                                                       TAAAGTCAGAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT                      <  SRR4302540.2960894/94‑1 (MQ=60)
                                                                        AAAGTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT                      <  SRR4302540.6314123/94‑1 (MQ=60)
                                                                         AAGTCAGAGTGAGGGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT                      <  SRR4302540.7786278/94‑1 (MQ=60)
                                                                         AAGTCAGAGTGA‑GGGGGGG‑GGTTGGCGAATGTTGGCTTAGTGCCCAGGGGTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGA                    >  SRR4302540.6465954/1‑94 (MQ=60)
                                                                           GTCAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAC                   >  SRR4302540.9536005/1‑94 (MQ=60)
                                                                             CAGAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCG                 >  SRR4302540.1082803/1‑94 (MQ=60)
                                                                               GAGTGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAG               <  SRR4302540.6331780/94‑1 (MQ=60)
                                                                               GAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGC              <  SRR4302540.2481951/94‑1 (MQ=60)
                                                                               GAGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGC              <  SRR4302540.4237940/94‑1 (MQ=60)
                                                                                GGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCG             <  SRR4302540.8668576/94‑1 (MQ=60)
                                                                                AGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCG             >  SRR4302540.3527584/1‑94 (MQ=60)
                                                                                AGTGA‑GGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCG             <  SRR4302540.7076115/94‑1 (MQ=60)
                                                                                 GTGA‑GGGGGGGGGGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCG             >  SRR4302540.9307213/1‑94 (MQ=60)
                                                                                 GGGA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCG             <  SRR4302540.209799/94‑1 (MQ=60)
                                                                                   GA‑GGGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCG           >  SRR4302540.4181656/1‑94 (MQ=60)
                                                                                        GGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGA       <  SRR4302540.7092335/94‑1 (MQ=60)
                                                                                         GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCCCCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT      <  SRR4302540.6058224/94‑1 (MQ=60)
                                                                                         GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT      <  SRR4302540.8145393/94‑1 (MQ=60)
                                                                                         GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT      >  SRR4302540.2488238/1‑94 (MQ=60)
                                                                                         GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT      <  SRR4302540.9828815/94‑1 (MQ=60)
                                                                                          GGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATA     <  SRR4302540.9571249/94‑1 (MQ=60)
                                                                                          GGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTCATA     >  SRR4302540.1170041/1‑94 (MQ=60)
                                                                                          GGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGATCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATG     >  SRR4302540.6410864/1‑94 (MQ=60)
                                                                                            GGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGC   >  SRR4302540.9429608/1‑94 (MQ=60)
                                                                                             GTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA  <  SRR4302540.163770/94‑1 (MQ=60)
                                                                                             GTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA  >  SRR4302540.678679/1‑94 (MQ=60)
                                                                                             GTGTTGGCGAATGTTGGCTCAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA  >  SRR4302540.9937957/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGA‑GGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA  >  NC_000913/631149‑631334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑