Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
631,241 |
Δ1 bp |
intergenic (+19/‑164) |
cstA → / → ybdD |
carbon starvation protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 631,241 | 0 | A | . | 95.3%
| 684.8
/ 24.3
| 175 | intergenic (+19/‑164) | cstA/ybdD | carbon starvation protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/2); major base . (101/63); minor base G (5/3); total (107/68) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.71e-03 |
Only 100 of 184 total aligned reads displayed.
AGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT > NC_000913/631153‑631330
|
gaaaCGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTgg > 2:1433035/1‑93 (MQ=255)
aaaCGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGc > 1:3715179/1‑93 (MQ=255)
aaaCGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGCGAGGGGGGG‑TGTTGGc > 1:2652609/1‑93 (MQ=255)
aaCGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCg < 1:3635773/93‑1 (MQ=255)
aCGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGa > 2:4534930/1‑93 (MQ=255)
cGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGt > 2:2284974/1‑93 (MQ=255)
gTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGtt > 1:4467099/1‑93 (MQ=255)
tATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTg > 2:3445274/1‑93 (MQ=255)
tATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTg > 1:200495/1‑93 (MQ=255)
aTGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTgg > 1:1007402/1‑93 (MQ=255)
aTGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTgg < 2:2134534/93‑1 (MQ=255)
aTGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTgg > 2:5565900/1‑93 (MQ=255)
tGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGc > 1:3224678/1‑93 (MQ=255)
tGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGc > 2:610032/1‑93 (MQ=255)
tGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGc < 1:4316188/93‑1 (MQ=255)
tGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑CGTTGGCGAATGTTGGc > 1:2071699/1‑93 (MQ=255)
cAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGt > 1:4074027/1‑93 (MQ=255)
cAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGt < 1:5454951/93‑1 (MQ=255)
cAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGt > 2:4802895/1‑93 (MQ=255)
aaTGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTg < 2:6043777/93‑1 (MQ=255)
aTGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGc < 2:279054/93‑1 (MQ=255)
tGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGcc > 1:3811975/1‑93 (MQ=255)
tGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGcc > 2:1878393/1‑93 (MQ=255)
ggAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAgg < 2:829759/93‑1 (MQ=255)
ggAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAgg > 1:5302293/1‑93 (MQ=255)
ggAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAgg < 1:5258514/93‑1 (MQ=255)
gAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAggg > 2:5016600/1‑93 (MQ=255)
aaaaTGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGt > 2:1360168/1‑93 (MQ=255)
aaaTGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGtt > 2:4373260/1‑93 (MQ=255)
aaTGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTc > 2:1597388/1‑93 (MQ=255)
aaTGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTc < 1:1930645/93‑1 (MQ=255)
tGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTccc > 1:733949/1‑93 (MQ=255)
tGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGGGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTccc > 2:1670003/1‑93 (MQ=255)
tCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCctc > 2:1169383/1‑93 (MQ=255)
tCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCctc < 2:4752128/93‑1 (MQ=255)
tCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCctc > 1:3031309/1‑93 (MQ=255)
cGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCctct < 1:12685/93‑1 (MQ=255)
cGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCctct < 1:4268734/93‑1 (MQ=255)
gaggagATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCtctc > 1:4345328/1‑93 (MQ=255)
gagaTCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCAcc > 2:3731848/1‑93 (MQ=255)
aTCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTa < 2:2487288/93‑1 (MQ=255)
aTCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTa > 2:3744014/1‑93 (MQ=255)
aTCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGCGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCGCTCTCACGCTa > 2:6229129/1‑93 (MQ=255)
tCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTaa > 2:4932407/1‑93 (MQ=255)
tCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTaa > 1:5525709/1‑93 (MQ=255)
gTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAAcc > 2:1131662/1‑93 (MQ=255)
ggCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCct > 2:6173709/1‑93 (MQ=255)
ggCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCct < 2:3542244/93‑1 (MQ=255)
cgcAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCctcc > 1:2422095/1‑92 (MQ=255)
gcAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCtctc > 2:1861110/1‑93 (MQ=255)
gcAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCtctc > 2:2676182/1‑93 (MQ=255)
aGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTccc > 2:692331/1‑93 (MQ=255)
aGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTccc < 2:3871503/93‑1 (MQ=255)
aGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTccc > 2:301790/1‑93 (MQ=255)
aGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTccc < 2:2985874/93‑1 (MQ=255)
aGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTccc > 2:5184318/1‑93 (MQ=255)
ggCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTcccc > 2:1334828/1‑93 (MQ=255)
ggCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTcccc > 1:5000725/1‑93 (MQ=255)
ggCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTcccc < 2:3110519/93‑1 (MQ=255)
aaaaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGt < 2:3326893/93‑1 (MQ=255)
aaaaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGt > 1:2251750/1‑93 (MQ=255)
aaaaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGt > 1:2292137/1‑93 (MQ=255)
aaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTgg < 1:1928798/93‑1 (MQ=255)
aaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTgg < 1:1401090/93‑1 (MQ=255)
aaGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTgg < 1:30707/93‑1 (MQ=255)
aGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTggg < 1:3923265/93‑1 (MQ=255)
ggCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTgggg < 2:902833/93‑1 (MQ=255)
gcgcACACTAAAGTCAGAGTGAGGGGAGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCCCCCTAACCCTCTCCCCGGTGGGGc < 2:5090203/93‑1 (MQ=255)
gcACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGa < 1:1499621/93‑1 (MQ=255)
cacaCTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAg < 1:4403307/93‑1 (MQ=255)
cacaCTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAg < 1:4753165/93‑1 (MQ=255)
cacaCTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAg < 1:5201809/93‑1 (MQ=255)
cacaCTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAg < 1:3038773/93‑1 (MQ=255)
cacaCTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAg > 2:1189333/1‑93 (MQ=255)
acacTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTTGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAgg > 2:5876269/1‑93 (MQ=255)
acacTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAgg < 1:3403402/93‑1 (MQ=255)
acacTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAgg > 1:4183568/1‑93 (MQ=255)
acTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAgggg > 2:6090980/1‑93 (MQ=255)
cTAAAGTCAGAGTGTGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCATGGTTCCCTTTCACCCTAACCCTCTCCCCGGTGGGGCGAggggt > 2:6297580/1‑92 (MQ=37)
cTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGa > 1:617562/1‑93 (MQ=255)
cTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGa < 1:3868764/93‑1 (MQ=255)
tAAAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGa < 2:3377166/93‑1 (MQ=255)
tAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAc < 1:1743243/93‑1 (MQ=255)
tAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAc > 1:1091728/1‑93 (MQ=255)
aaGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTg < 2:4032713/93‑1 (MQ=255)
aaGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTg < 1:911344/93‑1 (MQ=255)
gTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAc < 1:4045643/93‑1 (MQ=255)
gTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAc > 1:3016567/1‑93 (MQ=255)
tCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAcc < 1:5587259/93‑1 (MQ=255)
agagTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGa > 1:2505560/1‑93 (MQ=255)
gTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAgcg < 1:3981131/93‑1 (MQ=255)
gTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAgcg > 2:1061895/1‑93 (MQ=255)
gTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAgcg > 2:23345/1‑93 (MQ=255)
gaggggggGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGcgcg > 2:632541/3‑93 (MQ=255)
aggggggGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGt < 2:4657266/92‑1 (MQ=255)
aggggggGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGt > 2:1897335/2‑93 (MQ=255)
ggggggGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGtt > 2:228282/1‑93 (MQ=255)
ggggggTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTg > 2:1748640/1‑93 (MQ=255)
ggggTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAt < 1:6136806/93‑1 (MQ=255)
ggggTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAt < 2:100972/93‑1 (MQ=255)
|
AGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT > NC_000913/631153‑631330
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA > NC_000913/631150‑631334
|
GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGT < SRR4302533.39843/94‑1 (MQ=60)
GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGT > SRR4302533.3618171/1‑94 (MQ=60)
GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGT > SRR4302533.535745/1‑94 (MQ=60)
GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGT > SRR4302533.5057377/1‑94 (MQ=60)
AAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTT < SRR4302533.5798271/94‑1 (MQ=60)
AAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGGGTGTT > SRR4302533.445168/1‑94 (MQ=60)
AAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTG < SRR4302533.2664410/94‑1 (MQ=60)
AGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGG > SRR4302533.3545945/1‑94 (MQ=60)
AGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCACAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGG > SRR4302533.4047330/1‑94 (MQ=60)
GAAACGGCGTATGAACCAATGCGGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGC < SRR4302533.5130054/94‑1 (MQ=60)
GAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGC > SRR4302533.3737985/1‑94 (MQ=60)
GAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGCGAGGGGGGG‑TGTTGGC > SRR4302533.2668905/1‑94 (MQ=60)
AACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGA < SRR4302533.3658129/94‑1 (MQ=60)
GCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATG > SRR4302533.3807597/1‑94 (MQ=60)
CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTT > SRR4302533.4494116/1‑94 (MQ=60)
CGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTG > SRR4302533.4093427/1‑94 (MQ=60)
GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTG > SRR4302533.201766/1‑94 (MQ=60)
GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTG > SRR4302533.3039256/1‑94 (MQ=60)
GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTG < SRR4302533.4892204/94‑1 (MQ=60)
GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTG < SRR4302533.1819118/94‑1 (MQ=60)
GTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑GGTTGGCGAATGTTG > SRR4302533.5320293/1‑94 (MQ=60)
TATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGG > SRR4302533.1013295/1‑94 (MQ=60)
TATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGG < SRR4302533.3051583/94‑1 (MQ=60)
ATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGC > SRR4302533.3244560/1‑94 (MQ=60)
ATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑CGTTGGCGAATGTTGGC > SRR4302533.2084461/1‑94 (MQ=60)
TGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCT < SRR4302533.4342180/94‑1 (MQ=60)
TGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCT > SRR4302533.914441/1‑94 (MQ=60)
AACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTA > SRR4302533.3365603/1‑94 (MQ=60)
ACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAG < SRR4302533.4542686/94‑1 (MQ=60)
ACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAG > SRR4302533.2301320/1‑94 (MQ=60)
CCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGT > SRR4302533.4098830/1‑94 (MQ=60)
CAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTG < SRR4302533.5487815/94‑1 (MQ=60)
AATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGC > SRR4302533.1183298/1‑94 (MQ=60)
ATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCC > SRR4302533.3835288/1‑94 (MQ=60)
CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGG < SRR4302533.2076234/94‑1 (MQ=60)
CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGG > SRR4302533.5334058/1‑94 (MQ=60)
CGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑GGTTGGCGAATGTTGGCTTAGTGCCCAGG > SRR4302533.1746036/1‑94 (MQ=60)
GGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGG < SRR4302533.1948153/94‑1 (MQ=60)
GGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGG < SRR4302533.5290087/94‑1 (MQ=60)
GAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGT > SRR4302533.4215212/1‑94 (MQ=60)
AATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCC < SRR4302533.1942422/94‑1 (MQ=60)
ATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCC > SRR4302533.738267/1‑94 (MQ=60)
ATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCC > SRR4302533.5580273/1‑94 (MQ=60)
TGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCT < SRR4302533.4404236/94‑1 (MQ=60)
TGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCT < SRR4302533.996088/94‑1 (MQ=60)
GTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTC > SRR4302533.3049859/1‑94 (MQ=60)
CGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTC < SRR4302533.4294432/94‑1 (MQ=60)
CGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTC < SRR4302533.12781/94‑1 (MQ=60)
CGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTC > SRR4302533.4371515/1‑94 (MQ=60)
AGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCAC > SRR4302533.389679/1‑94 (MQ=60)
ATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAA > SRR4302533.5559067/1‑94 (MQ=60)
GCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCC > SRR4302533.2437047/1‑94 (MQ=60)
CGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTC < SRR4302533.5555147/94‑1 (MQ=60)
GCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCC > SRR4302533.5343640/1‑94 (MQ=60)
GCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCC > SRR4302533.4323917/1‑94 (MQ=60)
AGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCC > SRR4302533.5031038/1‑94 (MQ=60)
CAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGT > SRR4302533.2306328/1‑94 (MQ=60)
CAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGT > SRR4302533.1359002/1‑94 (MQ=60)
CAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGT > SRR4302533.2265671/1‑94 (MQ=60)
AAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTG > SRR4302533.4151634/1‑94 (MQ=60)
AAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGG < SRR4302533.1409537/94‑1 (MQ=60)
AAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGG < SRR4302533.30919/94‑1 (MQ=60)
AAGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGG < SRR4302533.1940569/94‑1 (MQ=60)
AGGCGCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGG < SRR4302533.3947219/94‑1 (MQ=60)
GCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAG < SRR4302533.1508660/94‑1 (MQ=60)
GCACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAG > SRR4302533.1425085/1‑94 (MQ=60)
CACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG < SRR4302533.4429893/94‑1 (MQ=60)
CACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG < SRR4302533.3057368/94‑1 (MQ=60)
CACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG < SRR4302533.4781979/94‑1 (MQ=60)
CACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG > SRR4302533.4208902/1‑94 (MQ=60)
CACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGG < SRR4302533.5233160/94‑1 (MQ=60)
ACACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGG < SRR4302533.3424416/94‑1 (MQ=60)
ACTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGA > SRR4302533.621182/1‑94 (MQ=60)
CTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAC > SRR4302533.5746820/1‑94 (MQ=60)
CTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAC > SRR4302533.1098182/1‑94 (MQ=60)
CTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAC < SRR4302533.3892385/94‑1 (MQ=60)
CTAAAGTCAGAGTGAGGGGGGG‑TGTTGGCAAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGAC < SRR4302533.3892384/94‑1 (MQ=60)
TAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT < SRR4302533.1753841/94‑1 (MQ=60)
TAAAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT < SRR4302533.6285600/94‑1 (MQ=60)
AAGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGA < SRR4302533.916690/94‑1 (MQ=60)
AGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAC < SRR4302533.24222/94‑1 (MQ=60)
AGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAC > SRR4302533.3035016/1‑94 (MQ=60)
AGTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGAC > SRR4302533.3065431/1‑94 (MQ=60)
GTCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACC < SRR4302533.4070264/94‑1 (MQ=60)
TCAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCG < SRR4302533.5621015/94‑1 (MQ=60)
CAGAGTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGA > SRR4302533.2521007/1‑94 (MQ=60)
GTGAGGGGGGG‑TGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGC < SRR4302533.4005370/94‑1 (MQ=60)
GGGGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTG < SRR4302533.2721365/94‑1 (MQ=60)
GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT > SRR4302533.2166953/1‑94 (MQ=60)
GGGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGAT < SRR4302533.3695590/94‑1 (MQ=60)
GGGGTGTTGGCGAATGTTGGCTTAGTGCCTAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATA < SRR4302533.2600595/94‑1 (MQ=60)
GGGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATA < SRR4302533.6173777/94‑1 (MQ=60)
GGGTGTTGGCGAATGTTGGCTTAGTGCCCAGTGTTCCCTCTCCCCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCCTTGATAG < SRR4302533.5795770/94‑1 (MQ=60)
GGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAG < SRR4302533.6224927/94‑1 (MQ=60)
GGGTGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAG < SRR4302533.2496301/94‑1 (MQ=60)
GTGTTGGCGAATGTTGGTTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA < SRR4302533.579458/94‑1 (MQ=60)
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GAAAGAAACGCCGTATGAACCAATGCCGGAAAATGTCGAGGAGATCGTGGCGCAGGCAAAAGGCGCACACTAAAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCA > NC_000913/631150‑631334
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
