Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
639,910 |
T→C |
V322A (GTA→GCA) |
ahpF → |
alkyl hydroperoxide reductase F52a subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 639,910 | 0 | T | C | 99.6%
| 788.8
/ NA
| 241 | V322A (GTA→GCA) | ahpF | alkyl hydroperoxide reductase F52a subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (102/138); minor base A (1/0); total (103/138) |
| Fisher's exact test for biased strand distribution p-value = 4.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 246 total aligned reads displayed.
TTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGTACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCG > NC_000913/639820‑639999
|
ttGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCAc < 2:1798637/93‑1 (MQ=255)
ttGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCAc < 1:726053/93‑1 (MQ=255)
ttGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCAc < 2:135541/93‑1 (MQ=255)
ttGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCAc < 1:5092995/93‑1 (MQ=255)
tGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACt < 1:4694661/93‑1 (MQ=255)
aTGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGa > 2:2136568/1‑93 (MQ=255)
aTGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGa < 2:1289829/93‑1 (MQ=255)
tgtgATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGaa < 1:2224036/93‑1 (MQ=255)
gtgATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGaaa < 2:6198796/93‑1 (MQ=255)
aTCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCa > 1:5194810/1‑93 (MQ=255)
tCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCAc > 1:5946866/1‑93 (MQ=255)
tCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCAc > 2:349687/1‑93 (MQ=255)
cGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACg > 2:11941/1‑93 (MQ=255)
cAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACgcag > 1:1695651/1‑93 (MQ=255)
ccAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCAt > 1:2512678/1‑93 (MQ=255)
agagCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTa < 1:3878262/93‑1 (MQ=255)
agagCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTa < 2:256411/93‑1 (MQ=255)
agagCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTa < 1:3222169/93‑1 (MQ=255)
gagCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAt < 2:4837639/93‑1 (MQ=255)
gcgcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCg < 2:1957903/93‑1 (MQ=255)
gcgcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCg > 1:3520224/1‑93 (MQ=255)
cgcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGt < 2:2947949/93‑1 (MQ=255)
cgcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGt < 1:2550458/93‑1 (MQ=255)
cgcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGt < 2:5155039/93‑1 (MQ=255)
gcCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTg < 2:3892665/93‑1 (MQ=255)
ccAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTgg > 2:3996060/1‑93 (MQ=255)
aGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCg > 2:2760550/1‑93 (MQ=255)
aGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCg < 1:4480120/93‑1 (MQ=255)
cAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGAc > 2:5026713/1‑93 (MQ=255)
aaCTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCg < 1:1563309/93‑1 (MQ=255)
aaCTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCg > 2:2442565/1‑93 (MQ=255)
gATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGAACTGAAAGCACGCAGCATTATCGTGGCGACGGGTGc > 2:5237653/1‑93 (MQ=255)
tCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCaa > 2:5080671/1‑93 (MQ=255)
cccAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCaaa > 2:3461346/1‑93 (MQ=255)
ccAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCaaaa > 1:4382846/1‑93 (MQ=255)
cagcagcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAAt > 2:3656511/1‑93 (MQ=255)
cagcagcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAAt > 1:5623719/1‑93 (MQ=255)
agcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGgcg > 1:4920539/1‑93 (MQ=255)
gcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCCCTGCAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGtcgc > 1:1568337/1‑93 (MQ=255)
gcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGgcgc > 1:2183975/1‑93 (MQ=255)
gcagTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGgcgc < 1:4186956/93‑1 (MQ=255)
agTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCaa < 2:1070192/93‑1 (MQ=255)
agTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCaa > 2:4361762/1‑93 (MQ=255)
gTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAAc > 2:5586439/1‑93 (MQ=255)
ttGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACa < 2:769304/93‑1 (MQ=255)
aaGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGa > 1:2962970/1‑93 (MQ=255)
aaGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGa < 2:3541703/93‑1 (MQ=255)
aaGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGa < 1:3317799/93‑1 (MQ=255)
aaGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGa < 2:3188167/93‑1 (MQ=255)
aaGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGa < 1:4315081/93‑1 (MQ=255)
aGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGaa > 2:5539721/1‑93 (MQ=255)
aGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGaa < 2:2277226/93‑1 (MQ=255)
tggtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGt > 1:1020524/1‑93 (MQ=255)
ggtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGtt < 2:5304082/93‑1 (MQ=255)
ggtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGtt < 1:2325920/93‑1 (MQ=255)
ggtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGtt < 1:5425412/93‑1 (MQ=255)
ggtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGGGCAAAATGGCGCAACATGAACGtt > 2:5378831/1‑93 (MQ=255)
gtCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTc < 2:4673911/93‑1 (MQ=255)
tCTGCATCAGATTTAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTcc < 1:110730/93‑1 (MQ=255)
tCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTcc < 1:4527917/93‑1 (MQ=255)
tCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTcc < 1:3941940/93‑1 (MQ=255)
cTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCg > 2:2288776/1‑93 (MQ=255)
tGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGTTGCAAAATGGCGCAACATGAACGTTCCgg < 2:669973/93‑1 (MQ=255)
tGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCgg < 1:4609337/93‑1 (MQ=255)
tGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCgg > 2:441867/1‑93 (MQ=255)
tGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCgg < 1:5466790/93‑1 (MQ=255)
gCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCggg < 2:1606336/93‑1 (MQ=255)
gCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCggg < 2:2179224/93‑1 (MQ=255)
cAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGaa > 1:4133010/1‑93 (MQ=255)
cAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGaa < 2:1865823/93‑1 (MQ=255)
cAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGaa < 1:2999809/93‑1 (MQ=255)
cAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGaa < 1:767014/93‑1 (MQ=255)
gATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGa > 2:6066172/1‑93 (MQ=255)
aTTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGAt > 1:6182161/1‑93 (MQ=255)
ttGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATc > 2:1325357/1‑93 (MQ=255)
ttGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATc < 1:2435716/93‑1 (MQ=255)
ttGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATc < 1:3744406/93‑1 (MQ=255)
gAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAg > 1:4844138/1‑93 (MQ=255)
gAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAg < 1:1240432/93‑1 (MQ=255)
aaaCAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGt < 2:2864533/93‑1 (MQ=255)
aaCAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTa < 1:902676/93‑1 (MQ=255)
aCAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATTAACGTTCCGGGCGAAGATCAGTAt > 2:4938079/1‑93 (MQ=255)
aCAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTAt < 1:3485307/93‑1 (MQ=255)
aCAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTAt > 1:5750990/1‑93 (MQ=255)
cAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATc > 1:5526403/1‑93 (MQ=255)
cAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATc < 1:3764700/93‑1 (MQ=255)
cAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATc < 1:2590476/93‑1 (MQ=255)
cAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATc > 1:3835462/1‑93 (MQ=255)
aGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCg > 1:1729068/1‑93 (MQ=255)
gCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGc > 2:5686501/1‑93 (MQ=255)
ttCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCAc > 2:5194466/1‑93 (MQ=255)
ttCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCAc > 1:611819/1‑93 (MQ=255)
tGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCaa > 2:5866747/1‑93 (MQ=255)
ggCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCaaa > 1:2031213/1‑93 (MQ=255)
ggCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCaaa < 1:3983521/93‑1 (MQ=255)
gcgcGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAg < 1:1927000/93‑1 (MQ=255)
gcgcGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAg < 1:2388245/93‑1 (MQ=255)
gcgGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGc > 2:4581833/1‑93 (MQ=255)
gcgGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGc > 1:2782165/1‑93 (MQ=255)
gcgGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGc < 2:3080527/93‑1 (MQ=255)
|
TTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGTACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCG > NC_000913/639820‑639999
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGTACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGAC > NC_000913/639817‑640003
|
ACGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGC > SRR4302533.2398937/1‑94 (MQ=60)
ACGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGC > SRR4302533.215151/1‑94 (MQ=60)
ACGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGC > SRR4302533.4923243/1‑94 (MQ=60)
CGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCA < SRR4302533.5745668/94‑1 (MQ=60)
GTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCAC < SRR4302533.167699/94‑1 (MQ=60)
TTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACT < SRR4302533.730343/94‑1 (MQ=60)
TTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACT > SRR4302533.2935096/1‑94 (MQ=60)
TTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACT < SRR4302533.5123763/94‑1 (MQ=60)
TGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTG < SRR4302533.4723109/94‑1 (MQ=60)
TGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTG > SRR4302533.4522370/1‑94 (MQ=60)
GATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGA < SRR4302533.6073387/94‑1 (MQ=60)
ATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAA > SRR4302533.4771967/1‑94 (MQ=60)
TGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAA < SRR4302533.2237770/94‑1 (MQ=60)
TGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGC > SRR4302533.4705509/1‑94 (MQ=60)
GATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCA > SRR4302533.5226142/1‑94 (MQ=60)
ATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCAC < SRR4302533.1573852/94‑1 (MQ=60)
ATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCAC < SRR4302533.3010749/94‑1 (MQ=60)
ATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCAC > SRR4302533.5982832/1‑94 (MQ=60)
CGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGC > SRR4302533.4204460/1‑94 (MQ=60)
GACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCA < SRR4302533.2222237/94‑1 (MQ=60)
ACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAG < SRR4302533.2353310/94‑1 (MQ=60)
ACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAG > SRR4302533.1705919/1‑94 (MQ=60)
AGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCA > SRR4302533.5799408/1‑94 (MQ=60)
AGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCA > SRR4302533.494038/1‑94 (MQ=60)
GCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCAT > SRR4302533.2528161/1‑94 (MQ=60)
GCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCAT < SRR4302533.972611/94‑1 (MQ=60)
GCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCAT < SRR4302533.5661192/94‑1 (MQ=60)
CCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATT > SRR4302533.4193129/1‑94 (MQ=60)
CAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGCAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTA > SRR4302533.2575312/1‑94 (MQ=60)
CAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGNNNCACTGAAAGCACGnnnntnta > SRR4302533.6189165/1‑86 (MQ=60)
AGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAT < SRR4302533.3901929/94‑1 (MQ=60)
AGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAT < SRR4302533.4227887/94‑1 (MQ=60)
AGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAT < SRR4302533.3242040/94‑1 (MQ=60)
AGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAT > SRR4302533.404045/1‑94 (MQ=60)
AGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTAT < SRR4302533.1583036/94‑1 (MQ=60)
AGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCG > SRR4302533.3541925/1‑94 (MQ=60)
AGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCG > SRR4302533.5057401/1‑94 (MQ=60)
AGCGCCAGCAAACTCATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCG < SRR4302533.2444476/94‑1 (MQ=60)
CGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTG < SRR4302533.2566154/94‑1 (MQ=60)
GCCAGCAAACTGAACCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGG < SRR4302533.1336481/94‑1 (MQ=60)
CCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGC < SRR4302533.1147057/94‑1 (MQ=60)
AGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGA < SRR4302533.4507223/94‑1 (MQ=60)
GCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGAC > SRR4302533.4553748/1‑94 (MQ=60)
AACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGG < SRR4302533.5540202/94‑1 (MQ=60)
AACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGG < SRR4302533.1572720/94‑1 (MQ=60)
AACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGG < SRR4302533.364480/94‑1 (MQ=60)
ACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGT < SRR4302533.5347098/94‑1 (MQ=60)
ACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGT > SRR4302533.2489693/1‑94 (MQ=60)
TGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGC > SRR4302533.3827291/1‑94 (MQ=60)
GATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCA > SRR4302533.5219996/1‑94 (MQ=60)
GATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAACTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCA > SRR4302533.4460666/1‑94 (MQ=60)
ATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAA > SRR4302533.883557/1‑94 (MQ=60)
ATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAA > SRR4302533.682121/1‑94 (MQ=60)
TCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAA > SRR4302533.4385779/1‑94 (MQ=60)
CCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAA > SRR4302533.4409306/1‑94 (MQ=60)
CCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAAT > SRR4302533.5657711/1‑94 (MQ=60)
CCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAAT > SRR4302533.5571937/1‑94 (MQ=60)
CCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAAT < SRR4302533.3786241/94‑1 (MQ=60)
GCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGC < SRR4302533.3274803/94‑1 (MQ=60)
CAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCG > SRR4302533.4950345/1‑94 (MQ=60)
AGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCCCTGCAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGTCGC > SRR4302533.1577780/1‑94 (MQ=60)
AGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGC > SRR4302533.2197439/1‑94 (MQ=60)
GCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCA < SRR4302533.4212310/94‑1 (MQ=60)
AGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAAC > SRR4302533.2595176/1‑94 (MQ=60)
TTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACAT > SRR4302533.335776/1‑94 (MQ=60)
TGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATG > SRR4302533.3742791/1‑94 (MQ=60)
TGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATG > SRR4302533.3510855/1‑94 (MQ=60)
TGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATG > SRR4302533.5285390/1‑94 (MQ=60)
GAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGA < SRR4302533.4557664/94‑1 (MQ=60)
GAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGA > SRR4302533.2981083/1‑94 (MQ=60)
AAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAA < SRR4302533.4341062/94‑1 (MQ=60)
AAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAA < SRR4302533.3338291/94‑1 (MQ=60)
AGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAAC < SRR4302533.3888756/94‑1 (MQ=60)
AGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAAC < SRR4302533.2242671/94‑1 (MQ=60)
AGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAAC < SRR4302533.2649350/94‑1 (MQ=60)
AGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAAC < SRR4302533.186973/94‑1 (MQ=60)
AGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAAC < SRR4302533.4006467/94‑1 (MQ=60)
GGTGGTCTGCATTAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACG < SRR4302533.3879051/94‑1 (MQ=60)
GGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACG < SRR4302533.1605943/94‑1 (MQ=60)
GGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACG < SRR4302533.5085427/94‑1 (MQ=60)
GTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGT > SRR4302533.1026520/1‑94 (MQ=60)
GGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTC < SRR4302533.5458086/94‑1 (MQ=60)
GGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTC < SRR4302533.6187171/94‑1 (MQ=60)
GGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTC < SRR4302533.2340320/94‑1 (MQ=60)
TCTGCATCAGATTTAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCG < SRR4302533.111432/94‑1 (MQ=60)
TCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCG < SRR4302533.5470533/94‑1 (MQ=60)
TCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCG < SRR4302533.4555338/94‑1 (MQ=60)
TCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCG < SRR4302533.3965992/94‑1 (MQ=60)
TCTGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCG < SRR4302533.3965993/94‑1 (MQ=60)
TGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGG < SRR4302533.6024495/94‑1 (MQ=60)
TGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGG < SRR4302533.5499741/94‑1 (MQ=60)
TGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGG > SRR4302533.3205759/1‑94 (MQ=60)
TGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGG < SRR4302533.1720666/94‑1 (MQ=60)
TGCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGG < SRR4302533.4637252/94‑1 (MQ=60)
GCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGC < SRR4302533.747138/94‑1 (MQ=60)
GCATCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGC < SRR4302533.2282987/94‑1 (MQ=60)
TCAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAA > SRR4302533.4158100/1‑94 (MQ=60)
CAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAG < SRR4302533.6310435/94‑1 (MQ=60)
CAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAG > SRR4302533.5659764/1‑94 (MQ=60)
CAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAG < SRR4302533.771538/94‑1 (MQ=60)
CAGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAG < SRR4302533.3018154/94‑1 (MQ=60)
AGATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACTTTCCGGGCGAAGA < SRR4302533.3427701/94‑1 (MQ=60)
GATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGAT > SRR4302533.6219284/1‑94 (MQ=60)
ATTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATA > SRR4302533.1308844/1‑94 (MQ=60)
TTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCA < SRR4302533.3767370/94‑1 (MQ=60)
TTGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCA < SRR4302533.2450758/94‑1 (MQ=60)
TGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAG > SRR4302533.4873497/1‑94 (MQ=60)
TGAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAG < SRR4302533.4684581/94‑1 (MQ=60)
GAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATTGCGCAACATGAACGTTGCGGGCGAAGATCAGA > SRR4302533.2099702/1‑94 (MQ=60)
GAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGT < SRR4302533.1247843/94‑1 (MQ=60)
GAAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGT < SRR4302533.3058366/94‑1 (MQ=60)
AAACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTA > SRR4302533.1980199/1‑94 (MQ=60)
AACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTAT > SRR4302533.5785682/1‑94 (MQ=60)
AACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTAT < SRR4302533.907970/94‑1 (MQ=60)
ACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATC > SRR4302533.5559766/1‑94 (MQ=60)
ACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATC < SRR4302533.3506802/94‑1 (MQ=60)
ACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATC > SRR4302533.3858899/1‑94 (MQ=60)
ACAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATC < SRR4302533.5502324/94‑1 (MQ=60)
CAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCG < SRR4302533.3787777/94‑1 (MQ=60)
CAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCG > SRR4302533.1739553/1‑94 (MQ=60)
CAGCTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCG < SRR4302533.2606395/94‑1 (MQ=60)
CTTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCAC > SRR4302533.615416/1‑94 (MQ=60)
TTCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACTGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACC > SRR4302533.1042430/1‑94 (MQ=60)
TCTGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCA > SRR4302533.1903935/1‑94 (MQ=60)
TGGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAA > SRR4302533.2043748/1‑94 (MQ=60)
GGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAG < SRR4302533.4007772/94‑1 (MQ=60)
GGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAG < SRR4302533.2562006/94‑1 (MQ=60)
GGCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAG < SRR4302533.2512231/94‑1 (MQ=60)
GCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGG < SRR4302533.1938760/94‑1 (MQ=60)
GCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGG < SRR4302533.3925523/94‑1 (MQ=60)
GCGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGG < SRR4302533.2402999/94‑1 (MQ=60)
CGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGC > SRR4302533.2799258/1‑94 (MQ=60)
CGCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGC > SRR4302533.2852007/1‑94 (MQ=60)
GCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCG < SRR4302533.4365824/94‑1 (MQ=60)
GCGGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCG > SRR4302533.2091049/1‑94 (MQ=60)
GGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTG < SRR4302533.4973283/94‑1 (MQ=60)
GGCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTG > SRR4302533.4654237/1‑94 (MQ=60)
GCACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGA < SRR4302533.2772677/94‑1 (MQ=60)
CACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGAC < SRR4302533.3560210/94‑1 (MQ=60)
CACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGAC < SRR4302533.3902192/94‑1 (MQ=60)
CACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGAC < SRR4302533.1933935/94‑1 (MQ=60)
|
ACGTTGATGTGATCGACAGCCAGAGCGCCAGCAAACTGATCCCAGCAGCAGTTGAAGGTGGTCTGCATCAGATTGAAACAGCTTCTGGCGCGGTACTGAAAGCACGCAGCATTATCGTGGCGACCGGTGCAAAATGGCGCAACATGAACGTTCCGGGCGAAGATCAGTATCGCACCAAAGGCGTGAC > NC_000913/639817‑640003
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
