Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAG  >  NC_000913/668964‑669150
                                                                                                 |                                                                                             
TCCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGG                                                                                               <  SRR4302540.9947591/94‑1 (MQ=60)
TCCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGG                                                                                               <  SRR4302540.2021513/94‑1 (MQ=60)
 CCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGT                                                                                              <  SRR4302540.2301662/94‑1 (MQ=60)
 CCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGG                                                                                              <  SRR4302540.4428103/94‑1 (MQ=60)
  CAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGGG                                                                                             >  SRR4302540.774923/1‑94 (MQ=60)
   AGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGgtg                                                                                            <  SRR4302540.9564145/94‑4 (MQ=60)
   AGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGgtg                                                                                            <  SRR4302540.5972677/94‑4 (MQ=60)
    GTTCACTGCATAAAACCAGATCAAAGGATACACCATGTAGCAGCGTATTCAGATTTAGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGG                                                                                           <  SRR4302540.48551/94‑1 (MQ=60)
    GTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGG                                                                                            >  SRR4302540.1561145/1‑94 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGG                                                                                           <  SRR4302540.1699598/94‑1 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGC                                                                                          >  SRR4302540.7648388/1‑94 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGC                                                                                          <  SRR4302540.2456404/94‑1 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGC                                                                                          >  SRR4302540.7648387/1‑94 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGC                                                                                          <  SRR4302540.471091/94‑1 (MQ=60)
     TTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGC                                                                                          >  SRR4302540.8170175/1‑94 (MQ=60)
      TCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCG                                                                                         >  SRR4302540.8463746/1‑94 (MQ=60)
       CACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCG                                                                                         >  SRR4302540.750250/1‑94 (MQ=60)
       CACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGgggggcg                                                                                        >  SRR4302540.5315409/1‑87 (MQ=60)
        ACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGC                                                                                        >  SRR4302540.7867767/1‑94 (MQ=60)
        ACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCA                                                                                       >  SRR4302540.9423582/1‑94 (MQ=60)
         CTGCATAAAACCAGATCAAAGGAAACACAATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCAT                                                                                      <  SRR4302540.2423400/94‑1 (MQ=60)
           GCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATG                                                                                     >  SRR4302540.1520768/1‑94 (MQ=60)
            CATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGAC                                                                                   <  SRR4302540.1121376/94‑1 (MQ=60)
            CATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCCCTTGCTCAATCCCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGAC                                                                                   <  SRR4302540.7453633/94‑1 (MQ=60)
             ATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGAC                                                                                   >  SRR4302540.848939/1‑94 (MQ=60)
             ATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGAC                                                                                   <  SRR4302540.7240054/94‑1 (MQ=60)
             ATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACC                                                                                  <  SRR4302540.4639045/94‑1 (MQ=60)
             ATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACC                                                                                  >  SRR4302540.6057296/1‑94 (MQ=60)
             ATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGGGGGCGCATGACC                                                                                  >  SRR4302540.767570/1‑94 (MQ=60)
              TAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACC                                                                                  <  SRR4302540.4377152/94‑1 (MQ=60)
              TAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACC                                                                                  >  SRR4302540.4411896/1‑94 (MQ=60)
              TAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACC                                                                                  >  SRR4302540.4278212/1‑94 (MQ=60)
              TAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACC                                                                                  <  SRR4302540.951346/94‑1 (MQ=60)
              TAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCG                                                                                 <  SRR4302540.1684415/94‑1 (MQ=60)
                AAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGC                                                                                >  SRR4302540.982707/1‑94 (MQ=60)
                AAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGC                                                                                >  SRR4302540.1230336/1‑94 (MQ=60)
                AAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGGGGGCGCATGACCGT                                                                                >  SRR4302540.1905210/1‑94 (MQ=60)
                 AACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCT                                                                               >  SRR4302540.6863106/1‑94 (MQ=60)
                 AACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTG                                                                              >  SRR4302540.4327761/1‑94 (MQ=60)
                 AACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTG                                                                              >  SRR4302540.9862603/1‑94 (MQ=60)
                  ACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTG                                                                              <  SRR4302540.7430770/94‑1 (MQ=60)
                  ACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGT                                                                             >  SRR4302540.6823593/1‑94 (MQ=60)
                   CCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGT                                                                             >  SRR4302540.2496047/1‑94 (MQ=60)
                   CCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGCGGTGGGCGCATGACCGCTGT                                                                             >  SRR4302540.2143150/1‑94 (MQ=60)
                   CCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTA                                                                            >  SRR4302540.9436981/1‑94 (MQ=60)
                    CAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTA                                                                            <  SRR4302540.7755129/94‑1 (MQ=60)
                     AGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAA                                                                           <  SRR4302540.785278/94‑1 (MQ=60)
                      GATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAA                                                                          >  SRR4302540.6113412/1‑94 (MQ=60)
                      GATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGAGGTCAGGGGGGGTGGGCGCCTGACCGCTGTAAA                                                                          >  SRR4302540.6113413/1‑94 (MQ=60)
                       ATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAG                                                                         >  SRR4302540.5636333/1‑94 (MQ=60)
                       ATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAG                                                                         <  SRR4302540.5767971/94‑1 (MQ=60)
                       ATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGA                                                                        <  SRR4302540.2909119/94‑1 (MQ=60)
                        TCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGA                                                                        >  SRR4302540.7671330/1‑94 (MQ=60)
                        TCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGA                                                                        >  SRR4302540.10113922/1‑94 (MQ=60)
                        TCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGA                                                                        >  SRR4302540.1120539/1‑94 (MQ=60)
                         CAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGAC                                                                       <  SRR4302540.4880191/94‑1 (MQ=60)
                         CAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACC                                                                      >  SRR4302540.8307309/1‑94 (MQ=60)
                          AAAGGAAACACCATGTAGCAGCGTATGCAGGTTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCA                                                                     >  SRR4302540.2484562/1‑94 (MQ=60)
                          AAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACC                                                                      <  SRR4302540.1081851/94‑1 (MQ=60)
                          AAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACC                                                                      <  SRR4302540.9762805/94‑1 (MQ=60)
                           AAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCA                                                                     >  SRR4302540.8977942/1‑94 (MQ=60)
                            AGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCAT                                                                    >  SRR4302540.3469581/1‑94 (MQ=60)
                            AGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCAT                                                                    >  SRR4302540.2197975/1‑94 (MQ=60)
                            AGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATC                                                                   <  SRR4302540.5837431/94‑1 (MQ=60)
                             GGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATC                                                                   >  SRR4302540.6678224/1‑94 (MQ=60)
                             GGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCG                                                                  >  SRR4302540.7977272/1‑94 (MQ=60)
                              GAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGA                                                                 <  SRR4302540.1904412/94‑1 (MQ=60)
                               AAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGA                                                                 <  SRR4302540.5372210/94‑1 (MQ=60)
                               AAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGA                                                                 <  SRR4302540.5372209/94‑1 (MQ=60)
                                AACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGAT                                                                <  SRR4302540.1009272/94‑1 (MQ=60)
                                AACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGAT                                                                <  SRR4302540.1009274/94‑1 (MQ=60)
                                  CACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATAT                                                              >  SRR4302540.1813385/1‑94 (MQ=60)
                                  CACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATAT                                                              >  SRR4302540.9366944/1‑94 (MQ=60)
                                   ACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATT                                                             <  SRR4302540.1677809/94‑1 (MQ=60)
                                   ACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGGGGGCGCATGACCGCTGTAAAGACCATCGATATT                                                             >  SRR4302540.3093411/1‑94 (MQ=60)
                                     CATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCG                                                           <  SRR4302540.481283/94‑1 (MQ=60)
                                     CATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCG                                                           >  SRR4302540.1439240/1‑94 (MQ=60)
                                     CATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCG                                                           >  SRR4302540.930510/1‑94 (MQ=60)
                                     CATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCG                                                           >  SRR4302540.6892299/1‑94 (MQ=60)
                                      ATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGC                                                          >  SRR4302540.5461827/1‑94 (MQ=60)
                                      ATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGAGGGCGCAGGACCGCTGTAAAGACCATCGATATTCGT                                                          >  SRR4302540.5461828/1‑94 (MQ=60)
                                      ATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCT                                                         >  SRR4302540.3076137/1‑94 (MQ=60)
                                       TGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCT                                                         <  SRR4302540.1041603/94‑1 (MQ=60)
                                        GTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTT                                                        <  SRR4302540.1600591/94‑1 (MQ=60)
                                         TAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTG                                                       <  SRR4302540.91889/94‑1 (MQ=60)
                                          AGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGC                                                      <  SRR4302540.1900523/94‑1 (MQ=60)
                                          AGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGC                                                      <  SRR4302540.4350049/94‑1 (MQ=60)
                                           GCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGT                                                    >  SRR4302540.997625/1‑94 (MQ=60)
                                            CAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGT                                                    >  SRR4302540.5867293/1‑94 (MQ=60)
                                            CAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGT                                                    >  SRR4302540.101645/1‑94 (MQ=60)
                                             AGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTT                                                   <  SRR4302540.7075081/94‑1 (MQ=60)
                                             AGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGGT                                                   >  SRR4302540.8363358/1‑94 (MQ=60)
                                             AGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTT                                                  >  SRR4302540.2270458/1‑94 (MQ=60)
                                              GCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTT                                                  <  SRR4302540.5099314/94‑1 (MQ=60)
                                               CGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCA                                                <  SRR4302540.571065/94‑1 (MQ=60)
                                               CGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCA                                                >  SRR4302540.9808941/1‑94 (MQ=60)
                                                 TATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCAC                                               <  SRR4302540.5229498/94‑1 (MQ=60)
                                                 TATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCAC                                               >  SRR4302540.9004108/1‑94 (MQ=60)
                                                 TATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGCGGCCGCATGACCGCTGTAAAGACCATGGATATTCGCTTGCGTTTCAC                                               >  SRR4302540.9500650/1‑94 (MQ=60)
                                                  ATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTACAGACCATCGATATTCGCTTGCGTTTCACC                                              >  SRR4302540.262525/1‑94 (MQ=60)
                                                  ATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACC                                              >  SRR4302540.2196686/1‑94 (MQ=60)
                                                  ATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACC                                              >  SRR4302540.262524/1‑94 (MQ=60)
                                                  ATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACC                                              >  SRR4302540.7175939/1‑94 (MQ=60)
                                                  ATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACA                                              >  SRR4302540.3560997/1‑94 (MQ=60)
                                                   TGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCAT                                            >  SRR4302540.2727384/1‑94 (MQ=60)
                                                    tcaggTTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGAGGTAGGCGCATGACCGCTTTAAAGACCATCGATATTCGCTTGCGTTTCACCAT                                            <  SRR4302540.3962665/89‑1 (MQ=60)
                                                    GCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCAT                                            >  SRR4302540.4324828/1‑94 (MQ=60)
                                                     CAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATG                                           <  SRR4302540.8033792/94‑1 (MQ=60)
                                                      AGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGA                                          <  SRR4302540.2021420/94‑1 (MQ=60)
                                                      AGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGAC                                         >  SRR4302540.9127658/1‑94 (MQ=60)
                                                       GATTTTGGTCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCAAGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACG                                        <  SRR4302540.1678725/94‑1 (MQ=60)
                                                       GATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGAC                                         <  SRR4302540.2750196/94‑1 (MQ=60)
                                                       GATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGAC                                         <  SRR4302540.4792352/94‑1 (MQ=60)
                                                       GATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGAC                                         <  SRR4302540.859440/94‑1 (MQ=60)
                                                        ATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACG                                        <  SRR4302540.1083323/94‑1 (MQ=60)
                                                              CGCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAA                                  >  SRR4302540.229988/1‑94 (MQ=60)
                                                              CGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAAC                                 >  SRR4302540.8913739/1‑94 (MQ=60)
                                                               GCTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAAC                                 >  SRR4302540.7184831/1‑94 (MQ=60)
                                                               GCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACC                                >  SRR4302540.2933350/1‑94 (MQ=60)
                                                               GCTGGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACC                                <  SRR4302540.2694646/94‑1 (MQ=60)
                                                                CTTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACC                                >  SRR4302540.6970423/1‑94 (MQ=60)
                                                                 TTGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCA                               <  SRR4302540.4853052/94‑1 (MQ=60)
                                                                 TTGCTCAATACCGCGCGCGGTCAGGGGGGGGGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCC                               >  SRR4302540.5612864/1‑94 (MQ=60)
                                                                 TTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCAC                              >  SRR4302540.9620160/1‑94 (MQ=60)
                                                                  TGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCAC                              <  SRR4302540.5889132/94‑1 (MQ=60)
                                                                  TGCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATAACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCAC                              >  SRR4302540.3254554/1‑94 (MQ=60)
                                                                  TGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACA                             >  SRR4302540.3694553/1‑94 (MQ=60)
                                                                   GCTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACA                             <  SRR4302540.9391594/94‑1 (MQ=60)
                                                                    CTCAATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAG                            >  SRR4302540.5182642/1‑94 (MQ=60)
                                                                    CTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGT                           >  SRR4302540.2698796/1‑94 (MQ=60)
                                                                    CTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGT                           <  SRR4302540.1245833/94‑1 (MQ=60)
                                                                       AATACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCG                         >  SRR4302540.8607539/1‑94 (MQ=60)
                                                                        ATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCA                       >  SRR4302540.10056416/1‑94 (MQ=60)
                                                                          ACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCAT                      >  SRR4302540.4472156/1‑94 (MQ=60)
                                                                          ACCGCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCAT                      >  SRR4302540.2805138/1‑94 (MQ=60)
                                                                          ACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATC                     <  SRR4302540.8022511/94‑1 (MQ=60)
                                                                            CGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCAT                   <  SRR4302540.4129950/94‑1 (MQ=60)
                                                                            CGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCAT                   <  SRR4302540.6775956/94‑1 (MQ=60)
                                                                             GCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCAT                   <  SRR4302540.1083106/94‑1 (MQ=60)
                                                                             GCGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCAT                   <  SRR4302540.7885228/94‑1 (MQ=60)
                                                                             GCGCGCGGTCA‑‑GGGGGAGTGGGCGCATGAACGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCAT                   <  SRR4302540.713520/94‑1 (MQ=60)
                                                                             GCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATG                  >  SRR4302540.4760186/1‑94 (MQ=60)
                                                                              CGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATG                  >  SRR4302540.2317499/1‑94 (MQ=60)
                                                                              CGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATG                  <  SRR4302540.6358810/94‑1 (MQ=60)
                                                                              CGCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATG                  <  SRR4302540.6624642/94‑1 (MQ=60)
                                                                               GCGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGC                 <  SRR4302540.2893218/94‑1 (MQ=60)
                                                                                CGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCC                >  SRR4302540.5276730/1‑94 (MQ=60)
                                                                                CGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCC                >  SRR4302540.2248520/1‑94 (MQ=60)
                                                                                CGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCC                <  SRR4302540.678238/94‑1 (MQ=60)
                                                                                CGCGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCC                >  SRR4302540.1275006/1‑94 (MQ=60)
                                                                                 GCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCT              <  SRR4302540.4447019/94‑1 (MQ=60)
                                                                                  CGGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCT              <  SRR4302540.4292276/94‑1 (MQ=60)
                                                                                   GGTCAGGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCT              <  SRR4302540.4440940/94‑1 (MQ=60)
                                                                                   GGTCAGGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTC             >  SRR4302540.7476599/1‑94 (MQ=60)
                                                                                   GGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCC            >  SRR4302540.8016645/1‑94 (MQ=60)
                                                                                      CA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTA         >  SRR4302540.6650890/1‑94 (MQ=60)
                                                                                       cagGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGT          >  SRR4302540.2532178/4‑94 (MQ=60)
                                                                                        agGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTA         >  SRR4302540.9325734/3‑94 (MQ=60)
                                                                                          GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCTATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAAC       <  SRR4302540.3237913/94‑1 (MQ=60)
                                                                                          GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAAC       <  SRR4302540.2570513/94‑1 (MQ=60)
                                                                                           GGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACG      <  SRR4302540.3656793/94‑1 (MQ=60)
                                                                                           GGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACG      >  SRR4302540.3321930/1‑94 (MQ=60)
                                                                                             GGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGAC    <  SRR4302540.5686316/94‑1 (MQ=60)
                                                                                             GGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGAC    <  SRR4302540.7085708/94‑1 (MQ=60)
                                                                                             GGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGAC    <  SRR4302540.2848683/94‑1 (MQ=60)
                                                                                             GGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGAC    >  SRR4302540.3569453/1‑94 (MQ=60)
                                                                                               GGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACA   >  SRR4302540.5652336/1‑94 (MQ=60)
                                                                                                 GTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAG  >  SRR4302540.1242178/1‑94 (MQ=60)
                                                                                                 GTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAG  <  SRR4302540.7361328/94‑1 (MQ=60)
                                                                                                 |                                                                                             
TCCAGTTCACTGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCA‑‑GGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAG  >  NC_000913/668964‑669150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: