Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGC  >  NC_000913/756227‑756410
                                                                                             |                                                                                          
TCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCC                                                                                            <  SRR4302540.2374252/94‑1 (MQ=60)
 CAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAACTCGCTTGTGTATCGGGACACGGCGCTA                                                                                           >  SRR4302540.5222371/1‑94 (MQ=60)
 CAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACCCGGCGCTA                                                                                           >  SRR4302540.7117216/1‑94 (MQ=60)
 CAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCA                                                                                           <  SRR4302540.5253473/94‑1 (MQ=60)
 CAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGCGAAATCGCTTGTGTATCGGTACACGGCGCTA                                                                                           >  SRR4302540.7117214/1‑94 (MQ=60)
     CACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACTG                                                                                       >  SRR4302540.7960664/1‑94 (MQ=60)
     CACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCG                                                                                       >  SRR4302540.7826076/1‑94 (MQ=60)
      ACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGT                                                                                      >  SRR4302540.1968242/1‑94 (MQ=60)
      ACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACAGCGCCAACCGT                                                                                      >  SRR4302540.5133266/1‑94 (MQ=60)
        TGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCT                                                                                    <  SRR4302540.3963025/94‑1 (MQ=60)
        TGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCT                                                                                    <  SRR4302540.2165292/94‑1 (MQ=60)
        TGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGGGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCG                                                                                    >  SRR4302540.7935821/1‑94 (MQ=60)
          ACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGG                                                                                  >  SRR4302540.6517/1‑94 (MQ=60)
           CTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGG                                                                                 >  SRR4302540.3762852/1‑94 (MQ=60)
           CTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGG                                                                                 >  SRR4302540.9639169/1‑94 (MQ=60)
             GTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCG                                                                               >  SRR4302540.5075310/1‑94 (MQ=60)
             GTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCG                                                                               >  SRR4302540.5075311/1‑94 (MQ=60)
                AATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCA                                                                            >  SRR4302540.1159697/1‑94 (MQ=60)
                AATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCA                                                                            >  SRR4302540.323588/1‑94 (MQ=60)
                AATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCA                                                                            <  SRR4302540.6911221/94‑1 (MQ=60)
                AATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCA                                                                            <  SRR4302540.6911227/94‑1 (MQ=60)
                AATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCA                                                                            >  SRR4302540.7147409/1‑94 (MQ=60)
                 ATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAA                                                                           >  SRR4302540.4405922/1‑94 (MQ=60)
                  TGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCGAC                                                                          >  SRR4302540.9411682/1‑94 (MQ=60)
                   GAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACT                                                                         >  SRR4302540.3926234/1‑94 (MQ=60)
                   GAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACT                                                                         >  SRR4302540.562602/1‑94 (MQ=60)
                   GAGAAAGGCGAAGATGTGGTTGGTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACT                                                                         <  SRR4302540.2904695/94‑1 (MQ=60)
                     GAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCG                                                                       >  SRR4302540.414095/1‑94 (MQ=60)
                     GAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCG                                                                       <  SRR4302540.8459991/94‑1 (MQ=60)
                     GAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCG                                                                       >  SRR4302540.6086364/1‑94 (MQ=60)
                     GAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCG                                                                       <  SRR4302540.5401702/94‑1 (MQ=60)
                       AAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAAACGTCTGGGCGGCAACTCGCT                                                                     >  SRR4302540.7475986/1‑94 (MQ=60)
                       AAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCT                                                                     <  SRR4302540.6388571/94‑1 (MQ=60)
                       AAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCT                                                                     <  SRR4302540.5125738/94‑1 (MQ=60)
                       AAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCT                                                                     <  SRR4302540.6801156/94‑1 (MQ=60)
                        AGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTG                                                                    >  SRR4302540.5295788/1‑94 (MQ=60)
                         GGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGC                                                                   >  SRR4302540.2976267/1‑94 (MQ=60)
                          GCGAAGATGTGGTTGTTCCGTGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCT                                                                  <  SRR4302540.9542874/94‑1 (MQ=60)
                          GCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCT                                                                  <  SRR4302540.9388410/94‑1 (MQ=60)
                          GCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGGTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCT                                                                  <  SRR4302540.9801515/94‑1 (MQ=60)
                          GCGAAGATGTGGTTGTTCCGGCGCTGTTTGCCGTTGGTGAAATCGCATGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCT                                                                  <  SRR4302540.9542873/94‑1 (MQ=60)
                           cctAGATGTTGTTGTTCCGGGACTGTTTGACCTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTATGGGCGGCAACTCGCTGCTG                                                                 <  SRR4302540.8240522/91‑1 (MQ=60)
                           GGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTG                                                                 <  SRR4302540.8862257/94‑1 (MQ=60)
                            GAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGG                                                                <  SRR4302540.6757660/94‑1 (MQ=60)
                             AAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGC                                                               >  SRR4302540.8640858/1‑94 (MQ=60)
                              AGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGAC                                                              <  SRR4302540.6904329/94‑1 (MQ=60)
                               GATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACC                                                             >  SRR4302540.3931286/1‑94 (MQ=60)
                                ATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCT                                                            <  SRR4302540.9296252/94‑1 (MQ=60)
                                ATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCT                                                            <  SRR4302540.61703/94‑1 (MQ=60)
                                ATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCT                                                            >  SRR4302540.7473619/1‑94 (MQ=60)
                                  GTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGG                                                          >  SRR4302540.5926838/1‑94 (MQ=60)
                                    GGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTG                                                        >  SRR4302540.9089864/1‑94 (MQ=60)
                                      TTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGT                                                      <  SRR4302540.1643888/94‑1 (MQ=60)
                                      TTGTGCAGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGT                                                      <  SRR4302540.3993183/94‑1 (MQ=60)
                                       TGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGTGCGGCAACTCGCTGCTGGACCTGGTGGTT                                                     >  SRR4302540.1947621/1‑94 (MQ=60)
                                       TGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTC                                                     <  SRR4302540.8341890/94‑1 (MQ=60)
                                          TCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGGGGTCTTT                                                  >  SRR4302540.3941362/1‑94 (MQ=60)
                                           TCGGGACGGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTG                                                 <  SRR4302540.3290522/94‑1 (MQ=60)
                                            CGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGG                                                <  SRR4302540.6921929/94‑1 (MQ=60)
                                            CGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGG                                                >  SRR4302540.7517577/1‑94 (MQ=60)
                                             GGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGT                                               >  SRR4302540.933479/1‑94 (MQ=60)
                                              GGACTGTTTGCCGTTGGTTAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTC                                              <  SRR4302540.7368420/94‑1 (MQ=60)
                                              GGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTC                                              >  SRR4302540.8898288/1‑94 (MQ=60)
                                              GGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTC                                              <  SRR4302540.7368689/94‑1 (MQ=60)
                                              GGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTC                                              <  SRR4302540.6974362/94‑1 (MQ=60)
                                               GACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCG                                             <  SRR4302540.4137811/94‑1 (MQ=60)
                                               GACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCG                                             <  SRR4302540.3895854/94‑1 (MQ=60)
                                                 CTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCG                                           >  SRR4302540.5996446/1‑94 (MQ=60)
                                                  TGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGC                                          >  SRR4302540.4534603/1‑94 (MQ=60)
                                                  TGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTTGTCGCGC                                          >  SRR4302540.567070/1‑94 (MQ=60)
                                                    TTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGG                                        <  SRR4302540.8211326/94‑1 (MQ=60)
                                                     TTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGC                                       >  SRR4302540.2564338/1‑94 (MQ=60)
                                                     TTGCCGTTAGTGAAGTCGCTTGTGTAACGGTGCACGGGGCTACCCGTCTTGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGC                                       <  SRR4302540.6968887/94‑1 (MQ=60)
                                                      TGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCA                                      >  SRR4302540.740861/1‑94 (MQ=60)
                                                      TGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCA                                      <  SRR4302540.6192295/94‑1 (MQ=60)
                                                      TGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCA                                      <  SRR4302540.5312148/94‑1 (MQ=60)
                                                       GCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAG                                     >  SRR4302540.9287958/1‑94 (MQ=60)
                                                       GCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAG                                     <  SRR4302540.1336981/94‑1 (MQ=60)
                                                       GCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAG                                     >  SRR4302540.479864/1‑94 (MQ=60)
                                                       GCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAG                                     >  SRR4302540.479863/1‑94 (MQ=60)
                                                        CCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGG                                    >  SRR4302540.5939247/1‑94 (MQ=60)
                                                         CGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGT                                   >  SRR4302540.8570906/1‑94 (MQ=60)
                                                          GTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTC                                  >  SRR4302540.2003946/1‑94 (MQ=60)
                                                          GTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTC                                  >  SRR4302540.8346952/1‑94 (MQ=60)
                                                          GTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTC                                  <  SRR4302540.1437855/94‑1 (MQ=60)
                                                          GTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTC                                  >  SRR4302540.10100176/1‑94 (MQ=60)
                                                          GTGGGTGAAATCGCTTGTGTATCGGTCCACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGTACCTGGTGGTCTTTGGTCGCGCGGCAGGTC                                  <  SRR4302540.1437854/94‑1 (MQ=60)
                                                           TTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCT                                 >  SRR4302540.3031630/1‑94 (MQ=60)
                                                           TTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCT                                 >  SRR4302540.2342738/1‑94 (MQ=60)
                                                             GGTGAAATCGGTTGTGTGTCGGTACGCGGCGGTAACCGTCTGGGCGGCGACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGC                               <  SRR4302540.114051/94‑1 (MQ=60)
                                                             GGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGC                               <  SRR4302540.114049/94‑1 (MQ=60)
                                                                 AAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCT                           >  SRR4302540.2486989/1‑94 (MQ=60)
                                                                 AAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCT                           <  SRR4302540.4915505/94‑1 (MQ=60)
                                                                 AAATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCT                           >  SRR4302540.3954848/1‑94 (MQ=60)
                                                                  AATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTG                          >  SRR4302540.7267640/1‑94 (MQ=60)
                                                                   ATCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGGCTGCATCTGG                         >  SRR4302540.9223/1‑94 (MQ=60)
                                                                   ATCCCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGC                         >  SRR4302540.7335295/1‑94 (MQ=60)
                                                                   ATCACTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGC                         >  SRR4302540.9220753/1‑94 (MQ=60)
                                                                    TCGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCA                        <  SRR4302540.4119427/94‑1 (MQ=60)
                                                                     CGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAA                       >  SRR4302540.1659246/1‑94 (MQ=60)
                                                                     CGCTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAA                       >  SRR4302540.1659247/1‑94 (MQ=60)
                                                                      GCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAG                      <  SRR4302540.2404089/94‑1 (MQ=60)
                                                                      GCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAG                      >  SRR4302540.5303060/1‑94 (MQ=60)
                                                                       CTTGTGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGA                     <  SRR4302540.2267457/94‑1 (MQ=60)
                                                                         TGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGT                   >  SRR4302540.3487337/1‑94 (MQ=60)
                                                                           TGTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCT                 <  SRR4302540.7839841/94‑1 (MQ=60)
                                                                            GTATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTA                >  SRR4302540.2948417/1‑94 (MQ=60)
                                                                             TATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGTTCGCGCGGCAGGTCTGCATCTTCAAGAGgctct               >  SRR4302540.8847219/1‑89 (MQ=60)
                                                                             TATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTAT               >  SRR4302540.99307/1‑94 (MQ=60)
                                                                             TATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTAT               >  SRR4302540.8847218/1‑94 (MQ=60)
                                                                             TATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTAT               >  SRR4302540.8895571/1‑94 (MQ=60)
                                                                             TATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGCGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTAT               >  SRR4302540.7796648/1‑94 (MQ=60)
                                                                              ATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATC              <  SRR4302540.7095505/94‑1 (MQ=60)
                                                                              ATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATC              >  SRR4302540.1923873/1‑94 (MQ=60)
                                                                              ATCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATC              >  SRR4302540.5838615/1‑94 (MQ=60)
                                                                               TCGGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCG             <  SRR4302540.7156598/94‑1 (MQ=60)
                                                                                CGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGC            >  SRR4302540.7563244/1‑94 (MQ=60)
                                                                                 GGTACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCC           >  SRR4302540.2392823/1‑94 (MQ=60)
                                                                                 GGTACACGGCGCCAACCGTCTGGGCGGCAAATCGCTGCTGGACCTGGTGGTCTTTGGTAGCGCGGCACGTCTGCATCCGCAAGAGCCTATCGCC           >  SRR4302540.5050874/1‑94 (MQ=60)
                                                                                    ACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAG        <  SRR4302540.451438/94‑1 (MQ=60)
                                                                                    ACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAG        <  SRR4302540.7997971/94‑1 (MQ=60)
                                                                                    ACACGGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAG        >  SRR4302540.4020762/1‑94 (MQ=60)
                                                                                        GGCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGG    <  SRR4302540.1666256/94‑1 (MQ=60)
                                                                                         GCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGG   <  SRR4302540.7987916/94‑1 (MQ=60)
                                                                                         GCGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGG   <  SRR4302540.7598356/94‑1 (MQ=60)
                                                                                          CGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGG  >  SRR4302540.8125974/1‑94 (MQ=60)
                                                                                          CGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGC  <  SRR4302540.2850940/94‑1 (MQ=60)
                                                                                          CGCCAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGC  <  SRR4302540.3351340/94‑1 (MQ=60)
                                                                                             |                                                                                          
TCAGGCACTGACTGTGAATGAGAAAGGCGAAGATGTGGTTGTTCCGGGACTGTTTGCCGTTGGTGAAATCGCTTGTGTATCGGTACACGGCGCTAACCGTCTGGGCGGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGC  >  NC_000913/756227‑756410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑